From 813a73af775264c69a9f4a8d66d7d89c597b60e0 Mon Sep 17 00:00:00 2001
From: Milan Malfait <38256462+milanmlft@users.noreply.github.com>
Date: Tue, 19 Nov 2024 11:49:10 +0100
Subject: [PATCH] Set up template for public version of app

---
 .env.sample       |  2 +-
 .gitignore        |  2 +-
 public.env.sample | 17 +++++++++++++++++
 3 files changed, 19 insertions(+), 2 deletions(-)
 create mode 100644 public.env.sample

diff --git a/.env.sample b/.env.sample
index 50742d9..7cf3745 100644
--- a/.env.sample
+++ b/.env.sample
@@ -1,5 +1,5 @@
 ENV=test
-DATA_VOLUME_PATH=./data/test_data
+DATA_VOLUME_PATH=./data/test_data/internal
 
 # For preprocessing
 PREPROCESS_DB_NAME=         # name of the source database
diff --git a/.gitignore b/.gitignore
index 6636cf0..2e234c7 100644
--- a/.gitignore
+++ b/.gitignore
@@ -49,4 +49,4 @@ po/*~
 rsconnect/
 
 !dev
-.env
+*.env
diff --git a/public.env.sample b/public.env.sample
new file mode 100644
index 0000000..102ce68
--- /dev/null
+++ b/public.env.sample
@@ -0,0 +1,17 @@
+ENV=test
+DATA_VOLUME_PATH=./data/test_data/public
+
+# For preprocessing
+PREPROCESS_DB_NAME=         # name of the source database
+PREPROCESS_HOST=            # host address for the source database
+PREPROCESS_PORT=            # port on which to connect to the source database
+PREPROCESS_DB_USERNAME=     # username for the source database
+PREPROCESS_DB_PASSWORD=     # password for the source database
+PREPROCESS_DB_CDM_SCHEMA=   # Schema name in the database to connect the OMOP CDM to 
+
+# Low-frequency replacement
+LOW_FREQUENCY_THRESHOLD=10
+LOW_FREQUENCY_REPLACEMENT=5
+
+# For testing
+TEST_DB_PATH=./data-raw/test_db/eunomia