diff --git a/README.md b/README.md index ca17a31..371b109 100644 --- a/README.md +++ b/README.md @@ -71,3 +71,4 @@ results to QuIP. ## Support Feel free to add any support inquiry as a github issue to this repository. Other feedback can be given via [this form](https://docs.google.com/forms/d/e/1FAIpQLScL91LxrpAZjU88GBZP9gmcdgdf8__uNUwhws2lzU6Lr4qNwA/viewform). + diff --git a/caMicroscope.yml b/caMicroscope.yml index 53a062e..6f45429 100644 --- a/caMicroscope.yml +++ b/caMicroscope.yml @@ -27,9 +27,9 @@ services: - mongo back: build: - context: "https://github.com/camicroscope/caracal.git#v3.9.4" + context: "https://github.com/camicroscope/caracal.git#v3.9.6" args: - viewer: "v3.9.4" + viewer: "v3.9.6" depends_on: - "mongo" ports: diff --git a/config/mongo_idx.js b/config/mongo_idx.js index 4c7d8e7..0de3699 100644 --- a/config/mongo_idx.js +++ b/config/mongo_idx.js @@ -6,6 +6,7 @@ db.mark.createIndex({"provenance.image.slide":1,"provenance.analysis": 1}) db.mark.createIndex({"provenance.image.slide": 1, "provenance.analysis.execution_id": 1}) db.mark.createIndex({"provenance.image.slide": 1, "provenance.analysis.source": 1}) db.mark.createIndex({"provenance.image.slide": 1}) +db.mark.createIndex({"provenance.analysis.labelId": 1}) db.slide.createIndex({'study':1, 'specimen': 1, 'name': 1}) db.template.createIndex({'id': 1}) db.template.createIndex({'name': 1}) diff --git a/config/routes.json b/config/routes.json index b5e67f9..c3b6cba 100644 --- a/config/routes.json +++ b/config/routes.json @@ -165,6 +165,12 @@ "handlers":[ {"function":"findMarkTypes", "args": []} ] + },{ + "route":"/data/Mark/updateMarksLabel", + "method":"post", + "handlers":[ + {"function":"updateMarksLabel", "args": []} + ] },{ "route":"/data/Presetlabels/add", "method":"post", diff --git a/config/segments.json b/config/segments.json new file mode 100644 index 0000000..22133ef --- /dev/null +++ b/config/segments.json @@ -0,0 +1,100 @@ 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diff --git a/quip-pathdb.yml b/quip-pathdb.yml index f9a07ed..fe83de7 100644 --- a/quip-pathdb.yml +++ b/quip-pathdb.yml @@ -26,9 +26,9 @@ services: - ./images/:/data/images/ back: build: - context: "https://github.com/camicroscope/caracal.git#v3.9.4" + context: "https://github.com/camicroscope/caracal.git#v3.9.6" args: - viewer: "v3.9.4" + viewer: "v3.9.6" depends_on: - "mongo" ports: @@ -48,7 +48,7 @@ services: build: context: "https://github.com/SBU-BMI/PathDB.git#1.6.1" args: - viewer: "v3.9.4" + viewer: "v3.9.6" container_name: quip-pathdb restart: unless-stopped ports: ["443:443","80:80"] @@ -67,7 +67,7 @@ services: - ./data:/data/ - ./images:/data/images segloader: - build: "https://github.com/SBU-BMI/SegmentationLoader.git#2.0" + build: "https://github.com/SBU-BMI/SegmentationLoader.git#2.1" container_name: quip-segloader volumes: - ./data:/data diff --git a/test/package-lock.json b/test/package-lock.json index c3e174f..356eb5b 100644 --- a/test/package-lock.json +++ b/test/package-lock.json @@ -1227,9 +1227,9 @@ "integrity": "sha1-tSQ9jz7BqjXxNkYFvA0QNuMKtp8=" }, "ws": { - "version": "5.2.2", - "resolved": "https://registry.npmjs.org/ws/-/ws-5.2.2.tgz", - "integrity": "sha512-jaHFD6PFv6UgoIVda6qZllptQsMlDEJkTQcybzzXDYM1XO9Y8em691FGMPmM46WGyLU4z9KMgQN+qrux/nhlHA==", + "version": "5.2.3", + "resolved": "https://registry.npmjs.org/ws/-/ws-5.2.3.tgz", + "integrity": "sha512-jZArVERrMsKUatIdnLzqvcfydI85dvd/Fp1u/VOpfdDWQ4c9qWXe+VIeAbQ5FrDwciAkr+lzofXLz3Kuf26AOA==", "requires": { "async-limiter": "~1.0.0" }