v2.2.1

GENIE releases:

• 6.2-consortium

Changelog:

• Patch for 2.2
• Fix docker file for vcf2maf installation

v2.2

GENIE releases:

• 6.2-consortium

Changelog:

• Standarize SEQ_ASSAY_ID in bed file
• Support Unknown, Not Applicable, Not Collected clinical values
• Add vital status values to clinical file

v2.1

GENIE releases:

• 6.1-consortium

Changelog:

• Switch from nose to pytest
• CNA validation/processing made more efficient
• SEQ_ASSAY can't be null
• Unknown oncotree codes allowed

v2.0.1

GENIE releases:

• 5.0-public
• 5.5-consortium

Changelog:

• Added tag to trigger with docker hub.

v2.0

GENIE releases:

5.0-public
5.5-consortium

Changelog:

v1.1

Uses python2.7. Not Python 3 compatible

GENIE releases:

4.1-public
4.4-consortium

Changelog:

Allows for newer centers to be removed after being processed already

Full Changelog: v1.0...v1.1

v1.0

Uses python2.7. Not Python 3 compatible

GENIE releases:

• 4.0-public
• 4.3-consortium

Changelog:

• Added SEQ_YEAR
• SEQ_DATE standardized into title format
• Capitalized all SEQ_ASSAY_ID
• RSA decryption
• Default mutationInCis filtering
• Implicit retraction on all files
• Bed processing boundaries