testing.yml

name: Unit Tests

on:
  push:
  pull_request:
  schedule:
      - cron: '00 4 * * *'  # daily at 4AM

jobs:

  build:

    runs-on: ubuntu-latest
    strategy:
      matrix:
        python-version:
        - "3.9"
        - "3.10"
        - "3.11"
      fail-fast: false
    steps:

    - uses: actions/checkout@v2

    - name: Set up Python ${{ matrix.python-version }}
      uses: actions/setup-python@v2
      with:
        python-version: ${{ matrix.python-version }}

    - name: Install
      shell: bash -l {0}
      run: source continuous_integration/scripts/install.sh

    - name: Install test requirements
      shell: bash -l {0}
      run: |
        set -vxeuo pipefail
        python -m pip install .[dev]
        python -m pip list
    
    - name: Lint with flake8
      shell: bash -l {0}
      run: |
        set -vxeuo pipefail
        python -m flake8
    
    - name: Lint with black
      shell: bash -l {0}
      run: black --check .
      
    - name: Lint with isort
      shell: bash -l {0}
      run: isort --check .
      
    - name: Lint with mypy
      shell: bash -l {0}
      run: mypy --check pyscicat
      
    - name: Test with pytest
      shell: bash -l {0}
      run: |
        set -vxeuo pipefail
        ls pyscicat
        coverage run -m pytest --ignore tests_integration -v 
        coverage report