SUMMARY.md

Table of contents

• Foundry Ecosystem
• LICENSE

Foundry Overview

• Introduction
• System Design
• Dispatcher
• Consumer Coordinator
• Ingestors / Harvesters
• Data Transform Language
• Foundry Data Export

Foundry Curator Guide

• Standards and Best Practices
• End to End Source Ingestion Tutorial
• Source Ingestion Tutorial Simplified
• Helper Scripts for Foundry Ingestion
• Core Foundry Scripts
• Troubleshooting Hints
• NCBI LinkOut

Foundry User Guide

• Built in Functions
• Default Source Descriptor
• CSV Ingestor
• Database Ingestor
• Native SQL Ingestor
• FTP Ingestor
• OAI-PMH Ingestor
• Web Ingestor

Foundry Developer Guide

• Introduction
• Installation Guide
• Dispatcher
• Consumer Head
• Implementing a new Enhancer
• Document Ingestion
• QC Checking

Foundry Enhancers

• Semantic Enhancer
• Resource Enhancer
• Relation Enhancer
• Resource Validator
• Quality Control

Foundry API

• Foundry API Overview
• Foundry API: Status Information (OLD)
• Foundry API: Status Information
• Foundry API: Source Information (old)
• Foundry API: Source Information
• Foundry API: Source Ingestion (old)
• Foundry API: Source Ingestion
• Foundry API: Run a Source (old)
• Foundry API: Run a Source
• Foundry API: Indexing (old)
• Foundry API: Indexing
• Foundry API: Reset a Source (old)
• Foundry API: Reset a Source
• Foundry API: Document Information (old)
• Foundry API: Document Information

Python Controller

• Foundry-ES Management (Overview)
• Python Controller
• Python Controller APIs Overview
• Python Controller API - Ingest
• Python Controller API - Update
• Python Controller API - Index
• Python Controller API - Run
• Python Controller API - Reprocess
• Python Controller API - Hold
• Python Controller API - Clear Resource
• Python Controller API - Reset resource
• Python Controller API - Recover
• Python Controller API - Inactivate_source
• Python Controller API - Reboot
• Python Controller API - Pause
• Python Controller API - Resume
• Developer Guide

Foundry Dashboard

• Workflows

Appendices

• Citation Information
• Useful Tools