From 0654a53b2b47acf88a58cb8d3b22f14b771ae675 Mon Sep 17 00:00:00 2001 From: Tom Gillespie Date: Sun, 30 Jul 2023 15:37:32 -0700 Subject: [PATCH 1/2] npo.ttl updated there was one manual change added to include ILX:0738432 as part of ILX:0793877 which is not propagating despite being in interlex, possibly because it is missing a mapping to uberon or something? --- ttl/npo.ttl | 579 ++++++++++++++++++++++++++-------------------------- 1 file changed, 287 insertions(+), 292 deletions(-) diff --git a/ttl/npo.ttl b/ttl/npo.ttl index 4c55e44b..6be9fe9e 100644 --- a/ttl/npo.ttl +++ b/ttl/npo.ttl @@ -59,7 +59,7 @@ rdfs:label "The Neuron Phenotype Ontology" ; dc:title "The Neuron Phenotype Ontology" ; dc:description "An ontology of neuron types based on the phenotypic dimensions of cells that can be measure experimentally." ; - owl:versionInfo "2023-07-26" ; + owl:versionInfo "2023-07-30" ; dc:contributor "Bernard de Bono - https://orcid.org/0000-0003-0638-5274", "Fahim Imam - https://orcid.org/0000-0003-4752-543X", "Ilias Ziogas - https://orcid.org/0000-0002-9210-2455", @@ -1408,6 +1408,14 @@ ILX:0100107 a owl:Class ; ilxtr:hasIlxId ILX:0100107 ; ilxtr:hasIlxPreferredId SAO:1164727693 . +ILX:0100559 a owl:Class ; + rdfs:label "AMPA-type glutamate-gated cationic channel" ; + ilxtr:hasExistingId ILX:0100559, + NIFEXT:5251 ; + ilxtr:hasExternalId NIFEXT:5251 ; + ilxtr:hasIlxId ILX:0100559 ; + ilxtr:hasIlxPreferredId NIFEXT:5251 . + ILX:0101528 a owl:Class ; rdfs:label "CA2 alveus" ; rdfs:subClassOf UBERON:0002305, @@ -1992,7 +2000,7 @@ ILX:0793357 a owl:Class ; rdfs:subClassOf UBERON:0001062 . ILX:0793358 a owl:Class ; - rdfs:label "Sixth lumbar spinal cord segment" ; + rdfs:label "Sixth lumbar spinal cord segment (duplicate)" ; NIFRID:synonym "L6 segment", "L6 spinal cord segment" . @@ -2532,6 +2540,56 @@ ILX:0793834 a owl:Class ; rdfs:label "accessory pelvic ganglion" ; rdfs:subClassOf UBERON:0000045 . +ILX:0793877 a owl:Class ; + rdfs:label "Intermediolateral nucleus of sixth lumbar segment" ; + rdfs:subClassOf UBERON:0001062, + [ a owl:Restriction ; + owl:onProperty ilx.partOf: ; + owl:someValuesFrom ILX:0738432 ], + [ a owl:Restriction ; + owl:onProperty ilx.partOf: ; + owl:someValuesFrom UBERON:0002175 ] . + +ILX:0793878 a owl:Class ; + rdfs:label "Intermediolateral nucleus of first sacral segment" ; + rdfs:subClassOf UBERON:0001062, + [ a owl:Restriction ; + owl:onProperty ilx.partOf: ; + owl:someValuesFrom UBERON:0002175 ], + [ a owl:Restriction ; + owl:onProperty ilx.partOf: ; + owl:someValuesFrom UBERON:0006460 ] . + +ILX:0793879 a owl:Class ; + rdfs:label "Intermediolateral nucleus of second sacral segment" ; + rdfs:subClassOf UBERON:0001062, + [ a owl:Restriction ; + owl:onProperty ilx.partOf: ; + owl:someValuesFrom UBERON:0002175 ], + [ a owl:Restriction ; + owl:onProperty ilx.partOf: ; + owl:someValuesFrom UBERON:0006461 ] . + +ILX:0793880 a owl:Class ; + rdfs:label "Intermediolateral nucleus of third sacral segment" ; + rdfs:subClassOf UBERON:0001062, + [ a owl:Restriction ; + owl:onProperty ilx.partOf: ; + owl:someValuesFrom UBERON:0002175 ], + [ a owl:Restriction ; + owl:onProperty ilx.partOf: ; + owl:someValuesFrom UBERON:0006462 ] . + +ILX:0793881 a owl:Class ; + rdfs:label "Intermediolateral nucleus of fourth sacral segment" ; + rdfs:subClassOf UBERON:0001062, + [ a owl:Restriction ; + owl:onProperty ilx.partOf: ; + owl:someValuesFrom UBERON:0002175 ], + [ a owl:Restriction ; + owl:onProperty ilx.partOf: ; + owl:someValuesFrom UBERON:0006463 ] . + ILX:0793882 a owl:Class ; rdfs:label "Dorsal gray commissure of first lumbar segment" ; rdfs:subClassOf UBERON:0014631, @@ -2571,10 +2629,8 @@ ilxtr:glutamateReceptor a owl:Class ; NCBIGene:11438 a owl:Class ; rdfs:label "Chrna4" ; NIFRID:synonym "a4 nicotinic receptor", - "Ac", "acetylcholine receptor alpha 4 neural", "acetylcholine receptor, neuronal, nicotinic, alpha-4 subunit", - "Acr", "Acra4", "Acra-4", "alpha4 nAChR", @@ -2586,21 +2642,18 @@ NCBIGene:11438 a owl:Class ; NCBIGene:11514 a owl:Class ; rdfs:label "Adcy8" ; - NIFRID:synonym "AC", - "AC8", + NIFRID:synonym "AC8", "adenylate cyclase 8", "adenylate cyclase type 8", "adenylate cyclase type VIII", "adenylyl cyclase 8", "ATP pyrophosphate-lyase 8", - "AW060868", "ca(2+)/calmodulin-activated adenylyl cyclase" ; rdfs:subClassOf SO:0000110 . NCBIGene:11515 a owl:Class ; rdfs:label "Adcy9" ; NIFRID:synonym "AC9", - "ACtp", "ACtp10", "adenylate cyclase 9", "adenylate cyclase type 9", @@ -2608,8 +2661,6 @@ NCBIGene:11515 a owl:Class ; "adenylyl cyclase 9", "adenylyl cyclase type 10", "ATP pyrophosphate-lyase 9", - "AW125421", - "D16Wsu65", "D16Wsu65e", "mKIAA0520" ; rdfs:subClassOf SO:0000110 . @@ -2634,14 +2685,11 @@ NCBIGene:11548 a owl:Class ; NCBIGene:11989 a owl:Class ; rdfs:label "Slc7a3" ; NIFRID:synonym "amino acid transporter, cationic 3", - "Atr", "Atrc3", - "Cat", "CAT3", "CAT-3", "cationic amino acid transporter 3", "cationic amino acid transporter y+", - "SLC", "SLC7A1", "SLC7A2", "solute carrier family 7 (cationic amino acid transporter, y+ system), member 3", @@ -2661,10 +2709,7 @@ NCBIGene:11998 a owl:Class ; NCBIGene:12307 a owl:Class ; rdfs:label "Calb1" ; - NIFRID:synonym "Bra", - "Brain-2", - "Ca", - "cal", + NIFRID:synonym "Brain-2", "Calb", "Calb-1", "calbindin", @@ -2683,9 +2728,7 @@ NCBIGene:12307 a owl:Class ; NCBIGene:12308 a owl:Class ; rdfs:label "Calb2" ; - NIFRID:synonym "C", - "cal", - "calbindin 2", + NIFRID:synonym "calbindin 2", "calretinin", "CR" ; rdfs:subClassOf SO:0000110 . @@ -2693,14 +2736,12 @@ NCBIGene:12308 a owl:Class ; NCBIGene:12310 a owl:Class ; rdfs:label "Calca" ; NIFRID:synonym "alpha-type CGRP", - "C", "CA", "Calc", "Calc1", "calcitonin gene-related peptide 1", "calcitonin gene-related peptide I", "calcitonin/calcitonin-related polypeptide, alpha", - "Cg", "Cgrp", "CGRP1", "CGRP-1", @@ -2715,14 +2756,12 @@ NCBIGene:12424 a owl:Class ; NCBIGene:12426 a owl:Class ; rdfs:label "Cckbr" ; - NIFRID:synonym "CCK2", - "CCK2-R", + NIFRID:synonym "CCK2-R", "CCK2/gastrin receptor", "CCK2R", "CCK-B receptor", "CCK-B/gastrin receptor", "CCK-BR", - "CCKR-", "CCKR-2", "cholecystokinin B receptor", "cholecystokinin-2 receptor", @@ -2742,7 +2781,6 @@ NCBIGene:12671 a owl:Class ; rdfs:label "Chrm3" ; NIFRID:synonym "AChR M3", "cholinergic receptor, muscarinic 3, cardiac", - "Chrm-", "Chrm-3", "M3", "M3R", @@ -2767,9 +2805,7 @@ NCBIGene:12801 a owl:Class ; NCBIGene:12854 a owl:Class ; rdfs:label "Cort" ; NIFRID:synonym "cortistatin", - "CS", "CST", - "PC", "PCST" ; rdfs:subClassOf SO:0000110 . @@ -2782,8 +2818,7 @@ NCBIGene:12864 a owl:Class ; NCBIGene:12889 a owl:Class ; rdfs:label "Cplx1" ; - NIFRID:synonym "921-", - "921-S", + NIFRID:synonym "921-S", "complexin 1", "complexin I", "complexin-1", @@ -2793,10 +2828,7 @@ NCBIGene:12889 a owl:Class ; NCBIGene:12890 a owl:Class ; rdfs:label "Cplx2" ; - NIFRID:synonym "921-", - "921-L", - "AI413745", - "AW492120", + NIFRID:synonym "921-L", "complexin 2", "complexin II", "complexin-2", @@ -2810,7 +2842,6 @@ NCBIGene:12918 a owl:Class ; NIFRID:synonym "corticoliberin", "corticotropin releasing factor", "corticotropin releasing hormone", - "CR", "CRF", "Gm1347" ; rdfs:subClassOf SO:0000110 . @@ -2824,31 +2855,24 @@ NCBIGene:13488 a owl:Class ; "dopamine D1 receptor", "dopamine receptor D1", "dopamine receptor D1A", - "Drd", "Drd1a", - "Drd-", "Drd-1", "G protein-coupled receptor DRD1", - "Gpcr", "Gpcr15" ; rdfs:subClassOf SO:0000110 . NCBIGene:13489 a owl:Class ; rdfs:label "Drd2" ; - NIFRID:synonym "D2", - "D2R", + NIFRID:synonym "D2R", "D(2) dopamine receptor", "dopamine receptor 2", "dopamine receptor D2", - "Drd-", "Drd-2" ; rdfs:subClassOf SO:0000110 . NCBIGene:13603 a owl:Class ; rdfs:label "Opn3" ; - NIFRID:synonym "E", - "Ec", - "Ecpn", + NIFRID:synonym "Ecpn", "encephalopsin", "ERO", "opsin 3", @@ -2870,10 +2894,11 @@ NCBIGene:13616 a owl:Class ; NCBIGene:14180 a owl:Class ; rdfs:label "Fgf9" ; - NIFRID:synonym "Ek", - "Eks", + NIFRID:synonym "Eks", "elbow knee synostosis", + "Fgf4b", "FGF-9", + "fibroblast growth factor 4b", "fibroblast growth factor 9", "GAF", "glia-activating factor", @@ -2887,25 +2912,24 @@ NCBIGene:14394 a owl:Class ; "GABAA-alpha1", "GABAAR alpha1", "GABAAR-alpha1", - "Gabr", "Gabra-1", "gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1", - "gamma-aminobutyric acid receptor subunit alpha-1" ; + "gamma-aminobutyric acid receptor subunit alpha-1", + "gamma-aminobutyric acid type A receptor subunit alpha 1" ; rdfs:subClassOf SO:0000110 . NCBIGene:14397 a owl:Class ; rdfs:label "Gabra4" ; NIFRID:synonym "GABA(A) receptor subunit alpha-4", - "Gabr", "Gabra-4", "gamma-aminobutyric acid (GABA) A receptor, subunit alpha 4", - "gamma-aminobutyric acid receptor subunit alpha-4" ; + "gamma-aminobutyric acid receptor subunit alpha-4", + "gamma-aminobutyric acid type A receptor subunit alpha 4" ; rdfs:subClassOf SO:0000110 . NCBIGene:14403 a owl:Class ; rdfs:label "Gabrd" ; - NIFRID:synonym "AI853201", - "GABA(A) receptor subunit delta", + NIFRID:synonym "GABA(A) receptor subunit delta", "gamma-aminobutyric acid (GABA) A receptor, subunit delta", "gamma-aminobutyric acid receptor subunit delta" ; rdfs:subClassOf SO:0000110 . @@ -2914,15 +2938,11 @@ NCBIGene:14417 a owl:Class ; rdfs:label "Gad2" ; NIFRID:synonym "65 kDa glutamic acid decarboxylase", "6330404F12Rik", - "GAD6", "GAD65", - "GAD(65", "GAD(65)", - "Gad-", "Gad-2", "GAD-65", "glutamate decarboxylase 2", - "glutamate decarboxylase 65 kDa isoform", "glutamic acid decarboxylase 2" ; rdfs:subClassOf SO:0000110 . @@ -2930,13 +2950,9 @@ NCBIGene:14799 a owl:Class ; rdfs:label "Gria1" ; NIFRID:synonym "2900051M01Rik", "AMPA-selective glutamate receptor 1", - "Gl", - "Glr", "Glr1", "Glr-1", - "Glu", "GluA1", - "Glur", "Glur1", "Glur-1", "GluR-A", @@ -2946,16 +2962,13 @@ NCBIGene:14799 a owl:Class ; "glutamate receptor A", "glutamate receptor ionotropic, AMPA 1", "glutamate receptor, ionotropic, AMPA1 (alpha 1)", - "HI", "HIPA1" ; rdfs:subClassOf SO:0000110 . NCBIGene:14802 a owl:Class ; rdfs:label "Gria4" ; NIFRID:synonym "AMPA-selective glutamate receptor 4", - "Glu", "GluA4", - "Glur", "Glur4", "Glur-4", "GluR-D", @@ -2965,7 +2978,6 @@ NCBIGene:14802 a owl:Class ; "glutamate receptor ionotropic, AMPA 4", "glutamate receptor, ionotropic, AMPA4 (alpha 4)", "spike wave 1", - "spk", "spkw1" ; rdfs:subClassOf SO:0000110 . @@ -2982,9 +2994,7 @@ NCBIGene:15560 a owl:Class ; "5-hydroxytryptamine receptor 1C", "5-hydroxytryptamine receptor 2C", "5HT1c", - "Htr1", "Htr1c", - "S", "serotonin receptor 2C", "SR1" ; rdfs:subClassOf SO:0000110 . @@ -3008,9 +3018,7 @@ NCBIGene:15567 a owl:Class ; "5-hydroxytryptamine (serotonin) transporter", "5HT transporter", "5HTT", - "AI323329", "Htt", - "Se", "Sert", "sodium-dependent serotonin transporter", "Sodium-dependent serotonin transporter (5HT transporter) (5HTT)", @@ -3021,8 +3029,6 @@ NCBIGene:15567 a owl:Class ; NCBIGene:16000 a owl:Class ; rdfs:label "Igf1" ; NIFRID:synonym "C730016P09Rik", - "Igf", - "Igf-", "Igf-1", "Igf-I", "insulin-like growth factor 1", @@ -3041,7 +3047,6 @@ NCBIGene:17260 a owl:Class ; rdfs:label "Mef2c" ; NIFRID:synonym "5430401D19Rik", "9930028G15Rik", - "AV011172", "Mef2", "myocyte enhancer factor 2C", "myocyte-specific enhancer factor 2C" ; @@ -3050,13 +3055,13 @@ NCBIGene:17260 a owl:Class ; NCBIGene:18125 a owl:Class ; rdfs:label "Nos1" ; NIFRID:synonym "2310005C01Rik", - "b", "bNOS", "constitutive NOS", "N-NOS", "NC-NOS", "neuronal nitric oxide synthase", "neuronal NOS", + "nitric oxide synthase 1", "nitric oxide synthase 1, neuronal", "nitric oxide synthase, brain", "nNOS", @@ -3069,26 +3074,19 @@ NCBIGene:18125 a owl:Class ; NCBIGene:18155 a owl:Class ; rdfs:label "Pnoc" ; - NIFRID:synonym "N23", - "N/O", - "N/OFQ", + NIFRID:synonym "N/OFQ", "neuropeptide nociceptin 1", - "Np", "Npnc1", - "OFQ", "OFQ/N", "orphanin FQ", - "p", "prepronociceptin", "proorphanin" ; rdfs:subClassOf SO:0000110 . NCBIGene:18159 a owl:Class ; rdfs:label "Nppc" ; - NIFRID:synonym "C", - "C-type natriuretic peptide", + NIFRID:synonym "C-type natriuretic peptide", "CNP", - "lb", "lbab", "natriuretic peptide precursor C", "natriuretic peptide precursor type C", @@ -3097,14 +3095,12 @@ NCBIGene:18159 a owl:Class ; NCBIGene:18166 a owl:Class ; rdfs:label "Npy1r" ; - NIFRID:synonym "N", - "neuropeptide Y receptor subtype", + NIFRID:synonym "neuropeptide Y receptor subtype", "neuropeptide Y receptor type 1", "neuropeptide Y receptor Y1", "NPY1-R", "NPY-1 receptor", "Npyr", - "Y1-", "Y1-R" ; rdfs:subClassOf SO:0000110 . @@ -3125,13 +3121,9 @@ NCBIGene:18188 a owl:Class ; NCBIGene:18195 a owl:Class ; rdfs:label "Nsf" ; - NIFRID:synonym "AI316878", - "AU020090", - "AU067812", - "N-ethylmaleimide sensitive factor", + NIFRID:synonym "N-ethylmaleimide sensitive factor", "N-ethylmaleimide sensitive fusion protein", "NEM-sensitive fusion protein", - "SKD", "SKD2", "suppressor of K(+) transport growth defect 2", "vesicle-fusing ATPase", @@ -3140,8 +3132,7 @@ NCBIGene:18195 a owl:Class ; NCBIGene:18430 a owl:Class ; rdfs:label "Oxtr" ; - NIFRID:synonym "O", - "OT-R", + NIFRID:synonym "OT-R", "OTR", "oxytocin receptor" ; rdfs:subClassOf SO:0000110 . @@ -3149,31 +3140,23 @@ NCBIGene:18430 a owl:Class ; NCBIGene:18573 a owl:Class ; rdfs:label "Pde1a" ; NIFRID:synonym "61 kDa Cam-PDE", - "AI987702", - "AW125737", "calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A", "cam-PDE 1A", + "dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A", "phosphodiesterase 1A, calmodulin-dependent" ; rdfs:subClassOf SO:0000110 . NCBIGene:18578 a owl:Class ; rdfs:label "Pde4b" ; NIFRID:synonym "cAMP-specific 3',5'-cyclic phosphodiesterase 4B", - "Dpde", "Dpde4", - "dunc", "dunce", - "phosphodiesterase 4B, cAMP specific", - "R74983" ; + "phosphodiesterase 4B, cAMP specific" ; rdfs:subClassOf SO:0000110 . NCBIGene:18619 a owl:Class ; rdfs:label "Penk" ; - NIFRID:synonym "AI326464", - "EN", - "ENK", - "Pe", - "Pen", + NIFRID:synonym "ENK", "Penk1", "PPA", "preproenkephalin", @@ -3184,16 +3167,12 @@ NCBIGene:18619 a owl:Class ; NCBIGene:19016 a owl:Class ; rdfs:label "Pparg" ; - NIFRID:synonym "Nr1", - "Nr1c3", + NIFRID:synonym "Nr1c3", "nuclear receptor subfamily 1 group C member 3", "peroxisome proliferator activated receptor gamma", "peroxisome proliferator activated receptor gamma 2", "peroxisome proliferator activated receptor gamma 4", "peroxisome proliferator-activated receptor gamma", - "PPA", - "PPAR", - "Ppar-", "PPAR-gamma", "PPAR-gamma2", "PPARgamma", @@ -3206,7 +3185,6 @@ NCBIGene:19017 a owl:Class ; "Gm11133", "peroxisome proliferative activated receptor, gamma, coactivator 1 alpha", "peroxisome proliferator-activated receptor gamma coactivator 1-alpha", - "Pgc", "Pgc1", "PGC-1", "Pgc-1alpha", @@ -3218,14 +3196,12 @@ NCBIGene:19017 a owl:Class ; NCBIGene:19091 a owl:Class ; rdfs:label "Prkg1" ; - NIFRID:synonym "AW125416", - "cGK1", + NIFRID:synonym "cGK1", "cGK 1", "CGKI", "cGMP-dependent protein kinase 1", "cGMP-dependent protein kinase I", "Gm19690", - "Prkg", "Prkg1b", "Prkgr1b", "protein kinase, cGMP-dependent, type I" ; @@ -3233,15 +3209,12 @@ NCBIGene:19091 a owl:Class ; NCBIGene:19092 a owl:Class ; rdfs:label "Prkg2" ; - NIFRID:synonym "AW212535", - "cGK2", + NIFRID:synonym "cGK2", "cGK 2", - "cGK-", "cGK-II", "CGKII", "cGMP-dependent protein kinase 2", "cGMP-dependent protein kinase II", - "Prk", "Prkgr2", "protein kinase, cGMP-dependent, type II" ; rdfs:subClassOf SO:0000110 . @@ -3254,8 +3227,6 @@ NCBIGene:19227 a owl:Class ; "parathyroid hormone-related peptide", "parathyroid hormone-related protein", "PLP", - "Pt", - "PTH-l", "PTH-like", "PTH-related peptide", "Pthrp" ; @@ -3264,18 +3235,15 @@ NCBIGene:19227 a owl:Class ; NCBIGene:19242 a owl:Class ; rdfs:label "Ptn" ; NIFRID:synonym "HARP", - "HB-GA", "HB-GAM", "HBBM", "HBBN", "HBGF-8", - "HBN", "HBNF", "heparin-binding brain mitogen", "heparin-binding growth factor 8", "heparin-binding growth-associated molecule", "heparin-binding neutrophic factor", - "Os", "OSF", "Osf1", "Osf-1", @@ -3301,7 +3269,6 @@ NCBIGene:19339 a owl:Class ; NCBIGene:19734 a owl:Class ; rdfs:label "Rgs16" ; NIFRID:synonym "A28-RGS14P", - "R", "regulator of G-protein signaling 16", "retinal-specific RGS", "retinally abundant regulator of G-protein signaling", @@ -3312,11 +3279,7 @@ NCBIGene:19734 a owl:Class ; NCBIGene:19736 a owl:Class ; rdfs:label "Rgs4" ; - NIFRID:synonym "AA004315", - "AA597169", - "ESTM4", - "ESTM5", - "ESTM48", + NIFRID:synonym "ESTM48", "ESTM50", "regulator of G-protein signaling 4" ; rdfs:subClassOf SO:0000110 . @@ -3324,7 +3287,6 @@ NCBIGene:19736 a owl:Class ; NCBIGene:19773 a owl:Class ; rdfs:label "Rln1" ; NIFRID:synonym "prorelaxin 1", - "r", "relaxin 1", "Rln", "rlx" ; @@ -3334,8 +3296,6 @@ NCBIGene:20508 a owl:Class ; rdfs:label "Slc18a3" ; NIFRID:synonym "solute carrier family 18 (vesicular monoamine), member 3", "solute carrier family 18 member 3", - "V", - "VAC", "VAChT", "VAT", "vesicular acetylcholine transporter" ; @@ -3345,13 +3305,11 @@ NCBIGene:20563 a owl:Class ; rdfs:label "Slit2" ; NIFRID:synonym "b2b1200.1Clo", "downregulated during adipocyte differentiation-1", - "Drad", "Drad-1", "E030015M03Rik", "E130320P19Rik", "mKIAA4141", "neurogenic extracellular slit protein", - "S", "Slil3", "slit guidance ligand 2", "slit homolog 2 protein", @@ -3361,7 +3319,6 @@ NCBIGene:20563 a owl:Class ; NCBIGene:20564 a owl:Class ; rdfs:label "Slit3" ; NIFRID:synonym "b2b2362.1Clo", - "Sl", "Slil2", "Slit1", "slit guidance ligand 3", @@ -3372,8 +3329,6 @@ NCBIGene:20564 a owl:Class ; NCBIGene:20604 a owl:Class ; rdfs:label "Sst" ; NIFRID:synonym "preprosomatostatin", - "S", - "Sm", "Smst", "SOM", "somatostatin", @@ -3383,11 +3338,9 @@ NCBIGene:20604 a owl:Class ; NCBIGene:20614 a owl:Class ; rdfs:label "Snap25" ; - NIFRID:synonym "Bd", - "Bdr", + NIFRID:synonym "Bdr", "blind drunk", "GENA70", - "SNA", "SNAP-25", "sp", "SUP", @@ -3399,8 +3352,7 @@ NCBIGene:20614 a owl:Class ; NCBIGene:20979 a owl:Class ; rdfs:label "Syt1" ; - NIFRID:synonym "AW124717", - "G630098F17Rik", + NIFRID:synonym "G630098F17Rik", "p65", "synaptotagmin I", "synaptotagmin-1", @@ -3413,7 +3365,6 @@ NCBIGene:20980 a owl:Class ; "IP4-binding protein", "IP4BP", "mKIAA4194", - "R74640", "synaptotagmin II", "synaptotagmin-2", "sytII" ; @@ -3429,16 +3380,11 @@ NCBIGene:20983 a owl:Class ; NCBIGene:21333 a owl:Class ; rdfs:label "Tac1" ; NIFRID:synonym "4930528L02Rik", - "N", "neurokinin 1", "neurokinin A", - "NK", "NK1", - "NK-", "NK-1", "Nkna", - "P", - "PP", "PPT-A", "PPTA", "preprotachykinin A", @@ -3467,14 +3413,11 @@ NCBIGene:21334 a owl:Class ; NCBIGene:21336 a owl:Class ; rdfs:label "Tacr1" ; NIFRID:synonym "neurokinin receptor 1", - "NK1", "Nk1 receptor", "Nk1r", - "NK-", "Spr", "substance P receptor", "substance-P receptor", - "Tac", "Tac1r", "tachykinin receptor 1" ; rdfs:subClassOf SO:0000110 . @@ -3499,7 +3442,6 @@ NCBIGene:22067 a owl:Class ; NIFRID:synonym "capacitative calcium entry channel 2", "CCE2", "short transient receptor potential channel 5", - "TR", "transient receptor potential cation channel, subfamily C, member 5", "transient receptor protein 5", "TRP5", @@ -3511,15 +3453,12 @@ NCBIGene:22067 a owl:Class ; NCBIGene:22068 a owl:Class ; rdfs:label "Trpc6" ; - NIFRID:synonym "AV025995", - "calcium entry channel", + NIFRID:synonym "calcium entry channel", "LLHWJM002", "LLHWJM003", "LLHWJM004", - "mtr", "mtrp6", "short transient receptor potential channel 6", - "Tr", "transient receptor potential cation channel, subfamily C, member 6", "transient receptor protein 6", "TRP-6", @@ -3528,14 +3467,10 @@ NCBIGene:22068 a owl:Class ; NCBIGene:22317 a owl:Class ; rdfs:label "Vamp1" ; - NIFRID:synonym "le", - "lew", - "Syb", + NIFRID:synonym "lew", "Syb1", - "Syb-", "Syb-1", "synaptobrevin-1", - "VAM", "VAMP-1", "vesicle-associated membrane protein 1" ; rdfs:subClassOf SO:0000110 . @@ -3545,15 +3480,12 @@ NCBIGene:22348 a owl:Class ; NIFRID:synonym "GABA and glycine transporter", "mVGAT", "mVIAAT", - "R7501", - "R75019", "solute carrier family 32 (GABA vesicular transporter), member 1", "solute carrier family 32 member 1", - "V", "vasicular inhibitory amino acid transporter 10D", + "vesicular GABA and glycine transporter", "vesicular GABA transporter a form", "vesicular inhibitory amino acid transporter", - "VG", "VGAT", "Viaat" ; rdfs:subClassOf SO:0000110 . @@ -3567,18 +3499,15 @@ NCBIGene:22353 a owl:Class ; NCBIGene:22354 a owl:Class ; rdfs:label "Vipr1" ; - NIFRID:synonym "AV071699", - "PACAP type II receptor", + NIFRID:synonym "PACAP type II receptor", "PACAP-R2", "PACAP-R-2", "pituitary adenylate cyclase-activating polypeptide type II receptor", "vasoactive intestinal peptide receptor 1", "vasoactive intestinal polypeptide receptor 1", - "VI", "VIP receptor subtype 1", "VIP-R1", "VIP-R-1", - "VP", "VPAC1" ; rdfs:subClassOf SO:0000110 . @@ -3588,13 +3517,11 @@ NCBIGene:22355 a owl:Class ; "PACAP-R3", "PACAP-R-3", "pituitary adenylate cyclase-activating polypeptide type III receptor", - "V", "vasoactive intestinal peptide receptor 2", "vasoactive intestinal polypeptide receptor 2", "Vip2", "VIP receptor subtype 2", "VIP-R-2", - "VP", "VPAC2", "VPAC2 receptor", "VPAC2R" ; @@ -3603,19 +3530,14 @@ NCBIGene:22355 a owl:Class ; NCBIGene:22413 a owl:Class ; rdfs:label "Wnt2" ; NIFRID:synonym "2610510E18Rik", - "Int", "Int1l1", "INT-1-related protein", "Irp", - "M", - "m-", "Mirp", "protein Wnt-2", "wingless-related MMTV integration site 2", "wingless-type MMTV integration site family, member 2", - "Wnt", "Wnt2a", - "Wnt-", "Wnt-2" ; rdfs:subClassOf SO:0000110 . @@ -3625,16 +3547,15 @@ NCBIGene:22418 a owl:Class ; "protein Wnt-5a", "wingless-related MMTV integration site 5A", "wingless-type MMTV integration site family, member 5A", - "Wnt-", "Wnt-5a" ; rdfs:subClassOf SO:0000110 . NCBIGene:22784 a owl:Class ; rdfs:label "Slc30a3" ; - NIFRID:synonym "solute carrier family 30 (zinc transporter), member 3", + NIFRID:synonym "probable proton-coupled zinc antiporter SLC30A3", + "solute carrier family 30 (zinc transporter), member 3", "solute carrier family 30 member 3", "zinc transporter 3", - "Znt", "Znt3", "znT-3" ; rdfs:subClassOf SO:0000110 . @@ -3648,14 +3569,12 @@ NCBIGene:24012 a owl:Class ; NCBIGene:26381 a owl:Class ; rdfs:label "Esrrg" ; - NIFRID:synonym "ER", - "ERR3", + NIFRID:synonym "ERR3", "Errg", "estrogen receptor-related protein 3", "estrogen-related receptor 3", "estrogen-related receptor gamma", "mKIAA0832", - "NR3", "NR3B3", "nuclear receptor subfamily 3 group B member 3" ; rdfs:subClassOf SO:0000110 . @@ -3670,10 +3589,8 @@ NCBIGene:50501 a owl:Class ; rdfs:label "Prok2" ; NIFRID:synonym "Bombina variegata 8 kD protein", "Bombina variegata 8kDa protein", - "Bv", "Bv8", "Bv 8 homolog (Bombina variegata)", - "PK", "PK2", "Prok1", "prokineticin 1", @@ -3689,8 +3606,7 @@ NCBIGene:50779 a owl:Class ; NCBIGene:50787 a owl:Class ; rdfs:label "Hs6st3" ; - NIFRID:synonym "6OS", - "6OST3", + NIFRID:synonym "6OST3", "heparan sulfate 6-O-sulfotransferase 3", "heparan-sulfate 6-O-sulfotransferase 3", "HS6ST-3" ; @@ -3701,7 +3617,6 @@ NCBIGene:53420 a owl:Class ; NIFRID:synonym "synaptotagmin IX", "synaptotagmin V", "synaptotagmin-5", - "Syt", "SytV" ; rdfs:subClassOf SO:0000110 . @@ -3725,7 +3640,6 @@ NCBIGene:54195 a owl:Class ; NCBIGene:54524 a owl:Class ; rdfs:label "Syt6" ; NIFRID:synonym "3110037A08Rik", - "AW048930", "synaptotagmin VI", "synaptotagmin-6", "sytVI" ; @@ -3733,8 +3647,7 @@ NCBIGene:54524 a owl:Class ; NCBIGene:54525 a owl:Class ; rdfs:label "Syt7" ; - NIFRID:synonym "AI851541", - "B230112P13Rik", + NIFRID:synonym "B230112P13Rik", "synaptotagmin VII", "synaptotagmin-7", "sytVII" ; @@ -3773,19 +3686,15 @@ NCBIGene:60596 a owl:Class ; "guanylate cyclase 1, soluble, alpha 3", "guanylate cyclase soluble subunit alpha-1", "guanylate cyclase soluble subunit alpha-3", - "Gucy1a", "Gucy1a3", - "sGC-a", "sGC-alpha1", "soluble guanylate cyclase large subunit" ; rdfs:subClassOf SO:0000110 . NCBIGene:64378 a owl:Class ; rdfs:label "Gpr88" ; - NIFRID:synonym "AW061286", - "G-protein coupled receptor 88", + NIFRID:synonym "G-protein coupled receptor 88", "probable G-protein coupled receptor 88", - "St", "Strg", "striatum-specific G-protein coupled receptor" ; rdfs:subClassOf SO:0000110 . @@ -3807,15 +3716,13 @@ NCBIGene:68939 a owl:Class ; rdfs:label "Rasl11b" ; NIFRID:synonym "1190017B18Rik", "ras-like protein family member 11B", - "RAS-like, family 11, member B", - "rasl11b" ; + "RAS-like, family 11, member B" ; rdfs:subClassOf SO:0000110 . NCBIGene:71729 a owl:Class ; rdfs:label "Rgs12" ; NIFRID:synonym "1200016K18Rik", "4632412M04Rik", - "AI481290", "E130309H11", "regulator of G-protein signaling 12" ; rdfs:subClassOf SO:0000110 . @@ -3838,18 +3745,14 @@ NCBIGene:72413 a owl:Class ; NCBIGene:76969 a owl:Class ; rdfs:label "Chst1" ; NIFRID:synonym "2610008E20Rik", - "AW125896", - "C6S", "C6ST", "carbohydrate (keratan sulfate Gal-6) sulfotransferase 1", "carbohydrate sulfotransferase 1", "galactose/N-acetylglucosamine/N-acetylglucosamine 6-O-sulfotransferase 1", "Gst1", - "GST-", "GST-1", "keratan sulfate Gal-6 sulfotransferase", "KS6ST", - "KSGA", "KSGAL6ST", "KSST", "N-acetylglucosamine-6-O-sulfotransferase 1" ; @@ -3861,7 +3764,6 @@ NCBIGene:107448 a owl:Class ; "netrin receptor UNC5A", "protein unc-5 homolog 1", "protein unc-5 homolog A", - "Unc5h", "Unc5h1", "unc-5 netrin receptor A" ; rdfs:subClassOf SO:0000110 . @@ -3875,7 +3777,6 @@ NCBIGene:107449 a owl:Class ; "protein unc-5 homolog 2", "protein unc-5 homolog B", "unc5 homolog 2", - "Unc5h", "Unc5h2", "unc-5 netrin receptor B" ; rdfs:subClassOf SO:0000110 . @@ -3897,7 +3798,6 @@ NCBIGene:140919 a owl:Class ; "solute carrier family 17 (vesicular glutamate transporter), member 6", "solute carrier family 17 member 6", "vesicular glutamate transporter 2", - "VGLU", "VGLUT2" ; rdfs:subClassOf SO:0000110 . @@ -3906,8 +3806,6 @@ NCBIGene:192199 a owl:Class ; NIFRID:synonym "cristin-3", "cysteine-rich and single thrombospondin domain-containing protein 3", "mCristin-3", - "R", - "R-", "R-spondin", "R-spondin 1", "R-spondin homolog", @@ -3962,7 +3860,6 @@ NCBIGene:210801 a owl:Class ; "protein unc-5 homolog 4", "protein unc-5 homolog D", "unc5 homolog 4", - "Unc5h", "Unc5h4", "unc-5 netrin receptor D" ; rdfs:subClassOf SO:0000110 . @@ -3972,7 +3869,7 @@ NCBIGene:230777 a owl:Class ; NIFRID:synonym "hypocretin (orexin) receptor 1", "hypocretin receptor type 1", "orexin receptor type 1", - "OX", + "orexin/Hypocretin receptor type 1", "ox1-R", "Ox1r", "ox-1-R" ; @@ -3982,35 +3879,31 @@ NCBIGene:234094 a owl:Class ; rdfs:label "Arhgef10" ; NIFRID:synonym "6430549H08Rik", "mKIAA0294", + "Rho guanine nucleotide exchange factor 10", "rho guanine nucleotide exchange factor 10", "Rho guanine nucleotide exchange factor (GEF) 10" ; rdfs:subClassOf SO:0000110 . NCBIGene:235415 a owl:Class ; rdfs:label "Cplx3" ; - NIFRID:synonym "BC016632", - "complexin 3", + NIFRID:synonym "complexin 3", "complexin III", "complexin-3", - "Cp", "CPX III", "CpxIII", "ERGIC-53L", "ERGL", "Lamn1l", "lectin, mannose-binding, 1 like", - "Lm", "Lman1l" ; rdfs:subClassOf SO:0000110 . NCBIGene:239405 a owl:Class ; rdfs:label "Rspo2" ; NIFRID:synonym "2610028F08Rik", - "AA673245", "cristin-2", "cysteine-rich and single thrombospondin domain-containing protein 2", "D430027K22", - "ft", "ftls", "mCristin-2", "R-spondin 2", @@ -4036,7 +3929,6 @@ NCBIGene:242202 a owl:Class ; "cGMP-binding cGMP-specific phosphodiesterase", "cGMP-specific 3',5'-cyclic phosphodiesterase", "Cn5n", - "Pde", "Pde5", "Pde5a1", "PDE5a2", @@ -4047,11 +3939,13 @@ NCBIGene:242443 a owl:Class ; rdfs:label "Grin3a" ; NIFRID:synonym "6430537F04", "A830097C19Rik", + "GluN3A", "glutamate receptor ionotropic, NMDA3A", "glutamate receptor ionotropic, NMDA 3A", "mKIAA1973", - "N", - "NMD", + "N-methyl-D-aspartate receptor", + "N-methyl-D-aspartate receptor subtype 3A", + "NMDAR3A", "NMDAR-L", "NR3A" ; rdfs:subClassOf SO:0000110 . @@ -4061,7 +3955,6 @@ NCBIGene:243764 a owl:Class ; NIFRID:synonym "AChR M2", "AChR-M2", "cholinergic receptor, muscarinic 2, cardiac", - "Chrm-", "Chrm-2", "M2", "muscarinic acetylcholine receptor 2", @@ -4072,22 +3965,18 @@ NCBIGene:380684 a owl:Class ; rdfs:label "Nefh" ; NIFRID:synonym "200 kDa neurofilament protein", "mKIAA0845", - "NEF", "neurofilament 200kDa", "neurofilament heavy polypeptide", "neurofilament triplet H protein", "neurofilament, heavy polypeptide", - "NF20", "NF200", - "NF-", "NF-H", "Nfh" ; rdfs:subClassOf SO:0000110 . NCBIGene:432530 a owl:Class ; rdfs:label "Adcy1" ; - NIFRID:synonym "AC", - "AC1", + NIFRID:synonym "AC1", "adenylate cyclase 1", "adenylate cyclase type 1", "adenylate cyclase type I", @@ -4097,7 +3986,6 @@ NCBIGene:432530 a owl:Class ; "brl", "Ca(2+)/calmodulin-activated adenylyl cyclase", "D11Bwg1392e", - "I-", "I-AC" ; rdfs:subClassOf SO:0000110 . @@ -4346,8 +4234,8 @@ NCBITaxon:39107 a owl:Class ; rdfs:subClassOf NCBITaxon:10066 . NCBITaxon:40674 a owl:Class ; - rdfs:label "Mammalia" ; - NIFRID:synonym "Mammal", + rdfs:label "Mammal" ; + NIFRID:synonym "Mammalia", "mammals" ; rdfs:subClassOf NCBITaxon:32524 . @@ -4698,6 +4586,34 @@ NLX:66882 a owl:Class ; ilxtr:hasIlxId ILX:0106729 ; ilxtr:hasIlxPreferredId NLX:66882 . +NLX:69833 a owl:Class ; + rdfs:label "GluR3" ; + rdfs:subClassOf ILX:0100559 ; + ilx.hasDbXref: NLXWIKI:nlx_69833 ; + ilxr:type ilx.type:term ; + ilxtr:hasExistingId ILX:0104674, + NLX:69833 ; + ilxtr:hasExternalId NLX:69833 ; + ilxtr:hasIlxId ILX:0104674 ; + ilxtr:hasIlxPreferredId NLX:69833 . + +NLX:70371 a owl:Class ; + rdfs:label "Basal pons" ; + rdfs:subClassOf NLX:62707, + [ a owl:Restriction ; + owl:onProperty partOf: ; + owl:someValuesFrom UBERON:0000988 ] ; + ilx.hasDbXref: NLXWIKI:nlx_70371 ; + ilx.partOf: UBERON:0000988 ; + ILX:0381449 "PMID:8978476", + "PMID:20886621" ; + ilxr:type ilx.type:term ; + ilxtr:hasExistingId ILX:0101112, + NLX:70371 ; + ilxtr:hasExternalId NLX:70371 ; + ilxtr:hasIlxId ILX:0101112 ; + ilxtr:hasIlxPreferredId NLX:70371 . + NLX:143975 a owl:Class ; rdfs:label "Rexed spinal cord parcellation scheme region" . @@ -4867,7 +4783,8 @@ NLXORG:110506 a owl:Class ; rdfs:subClassOf BFO:0000040 . OBI:0100026 a owl:Class ; - rdfs:label "organism" . + rdfs:label "organism" ; + rdfs:subClassOf BFO:0000040 . owl:Class a owl:Class . @@ -5125,21 +5042,6 @@ PR:000007786 a owl:Class ; PR:000000001, SAO:26622963 . -PR:000008235 a owl:Class ; - rdfs:label "glutamate receptor 3" ; - NIFRID:synonym "AMPA-selective glutamate receptor 3", - "GLUR3", - "GluR-3", - "GluR-C", - "GluR-K3", - "GLURC", - "glutamate receptor ionotropic, AMPA 3", - "GRIA3", - "Kiaa4184" ; - rdfs:subClassOf CHEBI:36080, - PR:000000001, - SAO:26622963 . - PR:000008476 a owl:Class ; rdfs:label "orexin" ; NIFRID:synonym "HCRT", @@ -6049,6 +5951,20 @@ UBERON:0000079 a owl:Class ; owl:onProperty partOf: ; owl:someValuesFrom UBERON:0003101 ] . +UBERON:0000101 a owl:Class ; + rdfs:label "lobe of lung" ; + NIFRID:synonym "lung lobe", + "pulminory lobe", + "pulmonary lobe" ; + rdfs:subClassOf UBERON:0004119, + UBERON:0009912, + [ a owl:Restriction ; + owl:onProperty partOf: ; + owl:someValuesFrom UBERON:0002048 ], + [ a owl:Restriction ; + owl:onProperty RO:0002433 ; + owl:someValuesFrom UBERON:0002048 ] . + UBERON:0000117 a owl:Class ; rdfs:label "respiratory tube" ; NIFRID:synonym "airway", @@ -6949,7 +6865,8 @@ UBERON:0000982 a owl:Class ; owl:someValuesFrom UBERON:0001434 ] . UBERON:0000988 a owl:Class ; - rdfs:label "pons" ; + rdfs:label "Pons", + "pons" ; NIFRID:synonym "pons cerebri", "pons of Varolius", "pons Varolii" ; @@ -6965,7 +6882,16 @@ UBERON:0000988 a owl:Class ; owl:someValuesFrom UBERON:0001895 ], [ a owl:Restriction ; owl:onProperty RO:0002433 ; - owl:someValuesFrom UBERON:0002298 ] . + owl:someValuesFrom UBERON:0002298 ] ; + ilxtr:hasExistingId BIRNLEX:733, + FMA:67943, + ILX:0109019, + UBERON:0000988 ; + ilxtr:hasExternalId BIRNLEX:733, + FMA:67943, + UBERON:0000988 ; + ilxtr:hasIlxId ILX:0109019 ; + ilxtr:hasIlxPreferredId UBERON:0000988 . UBERON:0000989 a owl:Class ; rdfs:label "penis" ; @@ -8131,8 +8057,7 @@ UBERON:0001555 a owl:Class ; UBERON:0001556 a owl:Class ; rdfs:label "lower urinary tract" ; - rdfs:subClassOf UBERON:0000477, - UBERON:0011216, + rdfs:subClassOf UBERON:0011216, [ a owl:Restriction ; owl:onProperty partOf: ; owl:someValuesFrom UBERON:0001008 ] . @@ -10914,7 +10839,13 @@ UBERON:0002187 a owl:Class ; rdfs:subClassOf UBERON:0002186, [ a owl:Restriction ; owl:onProperty partOf: ; - owl:someValuesFrom UBERON:0010368 ] . + owl:someValuesFrom RO:0002577 ], + [ a owl:Restriction ; + owl:onProperty partOf: ; + owl:someValuesFrom UBERON:0010368 ], + [ a owl:Restriction ; + owl:onProperty partOf: ; + owl:someValuesFrom UBERON:0010369 ] . UBERON:0002190 a owl:Class ; rdfs:label "subcutaneous adipose tissue" ; @@ -12272,6 +12203,22 @@ UBERON:0002600 a owl:Class ; "lobus limbicus" ; rdfs:subClassOf UBERON:0016526 . +UBERON:0002601 a owl:Class ; + rdfs:label "fasciolar gyrus" ; + NIFRID:synonym "fasciola cinerea", + "fasciola cinerea (Reil, Arnold)", + "fasciola cinereum", + "FC", + "gyrus fasciolaris", + "gyrus retrosplenialis hippocampi", + "retrosplenial gyrus of hippocampus", + "splenial gyrus" ; + rdfs:subClassOf UBERON:0000064, + UBERON:0004121, + [ a owl:Restriction ; + owl:onProperty partOf: ; + owl:someValuesFrom UBERON:0002600 ] . + UBERON:0002604 a owl:Class ; rdfs:label "ventral nucleus of lateral lemniscus" ; NIFRID:synonym "anterior nucleus of lateral lemniscus", @@ -12674,6 +12621,26 @@ UBERON:0002779 a owl:Class ; owl:onProperty partOf: ; owl:someValuesFrom UBERON:0022434 ] . +UBERON:0002782 a owl:Class ; + rdfs:label "medial superior olivary nucleus" ; + NIFRID:synonym "chief nucleus of superior olive", + "chief superior olivary nucleus", + "main superior olivary nucleus", + "medial superior olive", + "MSO", + "nucleus laminaris", + "nucleus olivaris superior medialis", + "principal superior olivary nucleus", + "superior olivary complex, medial part", + "superior olivary nucleus, medial part", + "superior olive medial part", + "superior paraolivary nucleus", + "superior parolivary nucleus" ; + rdfs:subClassOf UBERON:0007247, + [ a owl:Restriction ; + owl:onProperty partOf: ; + owl:someValuesFrom UBERON:0022434 ] . + UBERON:0002790 a owl:Class ; rdfs:label "dorsal acoustic stria" ; NIFRID:synonym "dorsal acoustic stria (Monakow)", @@ -13995,8 +13962,8 @@ UBERON:0003881 a owl:Class ; "field CA1, Ammon's horn (Lorente de Ns)", "hippocampus CA1", "prosubiculum = distal ca1", - "regio i cornus ammonis", - "regio i hippocampi proprii", + "regio I cornus ammonis", + "regio I hippocampi proprii", "regio superior", "regio superior of the hippocampus", "region 1 of Ammon's horn", @@ -15807,7 +15774,8 @@ UBERON:0005488 a owl:Class ; rdfs:label "superior mesenteric plexus" ; NIFRID:synonym "plexus mesentericus superior", "superior mesenteric nerve plexus" ; - rdfs:subClassOf UBERON:0035771, + rdfs:subClassOf UBERON:0000122, + UBERON:0035771, [ a owl:Restriction ; owl:onProperty partOf: ; owl:someValuesFrom RO:0002577 ] . @@ -16109,144 +16077,152 @@ UBERON:0006331 a owl:Class ; owl:someValuesFrom UBERON:0002298 ] . UBERON:0006447 a owl:Class ; - rdfs:label "fifth lumbar spinal cord segment" ; + rdfs:label "L5 segment of lumbar spinal cord" ; NIFRID:synonym "fifth lumbar spinal cord segment", "L5 segment", "L5 spinal cord segment" ; rdfs:subClassOf UBERON:0007716 . UBERON:0006448 a owl:Class ; - rdfs:label "first lumbar spinal cord segment" ; + rdfs:label "L1 segment of lumbar spinal cord" ; NIFRID:synonym "first lumbar spinal cord segment", "L1 segment", "L1 spinal cord segment" ; rdfs:subClassOf UBERON:0007716 . UBERON:0006449 a owl:Class ; - rdfs:label "third lumbar spinal cord segment" ; + rdfs:label "L3 segment of lumbar spinal cord" ; NIFRID:synonym "L3 segment", "L3 spinal cord segment", "third lumbar spinal cord segment" ; rdfs:subClassOf UBERON:0007716 . UBERON:0006450 a owl:Class ; - rdfs:label "second lumbar spinal cord segment" ; + rdfs:label "L2 segment of lumbar spinal cord" ; NIFRID:synonym "l2 segment", "L2 spinal cord segment", "second lumbar spinal cord segment" ; rdfs:subClassOf UBERON:0007716 . UBERON:0006451 a owl:Class ; - rdfs:label "fourth lumbar spinal cord segment" ; - NIFRID:synonym "L4 segment", + rdfs:label "L4 segment of lumbar spinal cord" ; + NIFRID:synonym "fourth lumbar spinal cord segment", + "L4 segment", "L4 spinal cord segment" ; rdfs:subClassOf UBERON:0007716 . UBERON:0006452 a owl:Class ; - rdfs:label "fourth thoracic spinal cord segment" ; - NIFRID:synonym "T4 segment", + rdfs:label "T4 segment of thoracic spinal cord" ; + NIFRID:synonym "fourth thoracic spinal cord segment", + "T4 segment", + "T4 segment of spinal cord", "T4 spinal cord segment" ; rdfs:subClassOf UBERON:0007715 . UBERON:0006453 a owl:Class ; - rdfs:label "fifth thoracic spinal cord segment" ; + rdfs:label "T5 segment of thoracic spinal cord" ; NIFRID:synonym "fifth thoracic spinal cord segment", "t5 segment", "T5 spinal cord segment" ; rdfs:subClassOf UBERON:0007715 . UBERON:0006454 a owl:Class ; - rdfs:label "sixth thoracic spinal cord segment" ; + rdfs:label "T6 segment of thoracic spinal cord" ; NIFRID:synonym "sixth thoracic spinal cord segment", "t6 segment", "T6 spinal cord segment" ; rdfs:subClassOf UBERON:0007715 . UBERON:0006455 a owl:Class ; - rdfs:label "seventh thoracic spinal cord segment" ; + rdfs:label "T7 segment of thoracic spinal cord" ; NIFRID:synonym "seventh thoracic spinal cord segment", "t7 segment", "T7 spinal cord segment" ; rdfs:subClassOf UBERON:0007715 . UBERON:0006456 a owl:Class ; - rdfs:label "eighth thoracic spinal cord segment" ; + rdfs:label "T8 segment of thoracic spinal cord" ; NIFRID:synonym "eighth thoracic spinal cord segment", "t8 segment", "T8 spinal cord segment" ; rdfs:subClassOf UBERON:0007715 . UBERON:0006457 a owl:Class ; - rdfs:label "first thoracic spinal cord segment" ; + rdfs:label "T1 segment of thoracic spinal cord" ; NIFRID:synonym "first thoracic spinal cord segment", "t1 segment", "T1 spinal cord segment" ; rdfs:subClassOf UBERON:0007715 . UBERON:0006458 a owl:Class ; - rdfs:label "second thoracic spinal cord segment" ; + rdfs:label "T2 segment of thoracic spinal cord" ; NIFRID:synonym "second thoracic spinal cord segment", "t2 segment", "T2 spinal cord segment" ; rdfs:subClassOf UBERON:0007715 . UBERON:0006459 a owl:Class ; - rdfs:label "third thoracic spinal cord segment" ; + rdfs:label "T3 segment of thoracic spinal cord" ; NIFRID:synonym "t3 segment", "T3 spinal cord segment", "third thoracic spinal cord segment" ; rdfs:subClassOf UBERON:0007715 . UBERON:0006460 a owl:Class ; - rdfs:label "first sacral spinal cord segment" ; + rdfs:label "S1 segment", + "S1 segment of sacral spinal cord" ; NIFRID:synonym "first sacral spinal cord segment", "S1 segment", "S1 spinal cord segment" ; rdfs:subClassOf UBERON:0007717 . UBERON:0006461 a owl:Class ; - rdfs:label "second sacral spinal cord segment" ; + rdfs:label "S2 segment", + "S2 segment of sacral spinal cord" ; NIFRID:synonym "S2 segment", "S2 spinal cord segment", "second sacral spinal cord segment" ; rdfs:subClassOf UBERON:0007717 . UBERON:0006462 a owl:Class ; - rdfs:label "third sacral spinal cord segment" ; + rdfs:label "S3 segment", + "S3 segment of sacral spinal cord" ; NIFRID:synonym "S3 segment", "S3 spinal cord segment", "third sacral spinal cord segment" ; rdfs:subClassOf UBERON:0007717 . UBERON:0006463 a owl:Class ; - rdfs:label "fourth sacral spinal cord segment" ; - NIFRID:synonym "S4 segment", + rdfs:label "S4 segment", + "S4 segment of sacral spinal cord" ; + NIFRID:synonym "fourth sacral spinal cord segment", + "S4 segment", "S4 spinal cord segment" ; rdfs:subClassOf UBERON:0007717 . UBERON:0006465 a owl:Class ; - rdfs:label "ninth thoracic spinal cord segment" ; + rdfs:label "T9 segment of thoracic spinal cord" ; NIFRID:synonym "ninth thoracic spinal cord segment", "t9 segment", "T9 spinal cord segment" ; rdfs:subClassOf UBERON:0007715 . UBERON:0006466 a owl:Class ; - rdfs:label "tenth thoracic spinal cord segment" ; + rdfs:label "T10 segment of thoracic spinal cord" ; NIFRID:synonym "t10 segment", "T10 spinal cord segment", "tenth thoracic spinal cord segment" ; rdfs:subClassOf UBERON:0007715 . UBERON:0006467 a owl:Class ; - rdfs:label "eleventh thoracic spinal cord segment" ; + rdfs:label "T11 segment of thoracic spinal cord" ; NIFRID:synonym "eleventh thoracic spinal cord segment", "t11 segment", "T11 spinal cord segment" ; rdfs:subClassOf UBERON:0007715 . UBERON:0006468 a owl:Class ; - rdfs:label "twelfth thoracic spinal cord segment" ; + rdfs:label "T12 segment of thoracic spinal cord" ; NIFRID:synonym "t12 segment", "T12 spinal cord segment", "twelfth thoracic spinal cord segment" ; @@ -17150,6 +17126,17 @@ UBERON:0008933 a owl:Class ; owl:onProperty partOf: ; owl:someValuesFrom UBERON:0016530 ] . +UBERON:0008946 a owl:Class ; + rdfs:label "lung parenchyma" ; + NIFRID:synonym "parenchyma of lung", + "pulmonary parenchyma", + "respiratory portion of lung" ; + rdfs:subClassOf UBERON:0000353, + UBERON:0004119, + [ a owl:Restriction ; + owl:onProperty partOf: ; + owl:someValuesFrom UBERON:0002048 ] . + UBERON:0008982 a owl:Class ; rdfs:label "fascia" ; NIFRID:synonym "fascia cluster" ; @@ -17576,7 +17563,18 @@ UBERON:0010368 a owl:Class ; UBERON:0009911, [ a owl:Restriction ; owl:onProperty partOf: ; - owl:someValuesFrom UBERON:0002048 ] . + owl:someValuesFrom UBERON:0002048 ], + [ a owl:Restriction ; + owl:onProperty partOf: ; + owl:someValuesFrom UBERON:8600017 ] . + +UBERON:0010369 a owl:Class ; + rdfs:label "secondary pulmonary lobule" ; + NIFRID:synonym "lobulus pulmonis secondarius" ; + rdfs:subClassOf UBERON:0010368, + [ a owl:Restriction ; + owl:onProperty partOf: ; + owl:someValuesFrom UBERON:0008946 ] . UBERON:0010371 a owl:Class ; rdfs:label "ecto-epithelium" ; @@ -17703,8 +17701,7 @@ UBERON:0011137 a owl:Class ; UBERON:0011143 a owl:Class ; rdfs:label "upper urinary tract" ; - rdfs:subClassOf UBERON:0000477, - UBERON:0011216, + rdfs:subClassOf UBERON:0011216, UBERON:0015212, [ a owl:Restriction ; owl:onProperty partOf: ; @@ -19455,8 +19452,7 @@ UBERON:0035639 a owl:Class ; "eye adnexa", "set of accessory visual structures", "structurae oculi accessoriae" ; - rdfs:subClassOf UBERON:0000477, - UBERON:0034921, + rdfs:subClassOf UBERON:0034921, [ a owl:Restriction ; owl:onProperty partOf: ; owl:someValuesFrom UBERON:0004088 ] . @@ -19477,7 +19473,8 @@ UBERON:0035770 a owl:Class ; NIFRID:synonym "inferior mesenteric plexus", "plexus mesentericus inferior", "plexus nervosus mesentericus inferior" ; - rdfs:subClassOf UBERON:0035771, + rdfs:subClassOf UBERON:0000122, + UBERON:0035771, [ a owl:Restriction ; owl:onProperty partOf: ; owl:someValuesFrom RO:0002577 ] . @@ -19656,28 +19653,26 @@ UBERON:8440004 a owl:Class ; owl:onProperty partOf: ; owl:someValuesFrom UBERON:0001950 ] . -UBERON:8440013 a owl:Class ; - rdfs:label "fasciola cinerea" ; - NIFRID:synonym "FC" ; - rdfs:subClassOf UBERON:0000064, - UBERON:0004121, - [ a owl:Restriction ; - owl:onProperty partOf: ; - owl:someValuesFrom UBERON:0002421 ] . - UBERON:8440015 a owl:Class ; rdfs:label "noradrenergic cell groups" ; rdfs:subClassOf UBERON:0002616 . -UBERON:8440043 a owl:Class ; - rdfs:label "superior paraolivary nucleus" ; - NIFRID:synonym "SPON" ; - rdfs:subClassOf UBERON:0007247 . - UBERON:8450002 a owl:Class ; rdfs:label "excretory system" ; rdfs:subClassOf UBERON:0000467 . +UBERON:8600017 a owl:Class ; + rdfs:label "bronchopulmonary segment" ; + NIFRID:synonym "lung segment" ; + rdfs:subClassOf UBERON:0000063, + UBERON:0004119, + [ a owl:Restriction ; + owl:onProperty partOf: ; + owl:someValuesFrom UBERON:0000101 ], + [ a owl:Restriction ; + owl:onProperty RO:0002433 ; + owl:someValuesFrom UBERON:0000101 ] . + ### Annotations ilxtr:parcellationLabel rdfs:subClassOf UBERON:0001062 . From f9ffbfab2f298cf2943d69c96e8bedf091d84dda Mon Sep 17 00:00:00 2001 From: Tom Gillespie Date: Sun, 30 Jul 2023 15:40:23 -0700 Subject: [PATCH 2/2] SPARC community terms sync for 2023-07-30T2240Z synchronize latest changes via http --- ttl/sparc-community-terms.ttl | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/ttl/sparc-community-terms.ttl b/ttl/sparc-community-terms.ttl index d91a733c..b361d56b 100644 --- a/ttl/sparc-community-terms.ttl +++ b/ttl/sparc-community-terms.ttl @@ -44,8 +44,8 @@ @prefix UBERON: . a owl:Ontology ; - owl:versionIRI ; - owl:versionInfo "2023-07-27T05:01:33,349256Z" . + owl:versionIRI ; + owl:versionInfo "2023-07-30T22:40:15,154671Z" . ### Object Properties @@ -6868,7 +6868,7 @@ ILX:0793357 a owl:Class ; ilxtr:hasIlxPreferredId ILX:0793357 . ILX:0793358 a owl:Class ; - rdfs:label "Sixth lumbar spinal cord segment" ; + rdfs:label "Sixth lumbar spinal cord segment (duplicate)" ; NIFRID:synonym "L6 segment", "L6 spinal cord segment" ; definition: "The segment of the spinal cord that gives rise to the dorsal and ventral roots that coalesce to form the sixth lumbar spinal nerve which exits the spinal column above the sixth lumbar vertebra in most mammals." ;