QBiC has two clusters available to run and analyze data directly. For both systems, an appropriate configuration profile is existing, enabling a direct usability of the pipeline on the respective cluster environment.
You may use the pipeline with the -profile binac switch when starting the pipeline. A typical call could work like this for example
nextflow run -profile binac scilifelab/NGI-ExoSeq --reads "*_R{1,2}*.fq" --genome 'GRCh37' --project "Test" --run_id "identifier" -resume
You may use the pipeline with the -profile cfc switch when starting the pipeline. A typical call could work like this for example
nextflow run -profile cfc scilifelab/NGI-ExoSeq --reads "*_R{1,2}*.fq" --genome 'GRCh37' --project "Test" --run_id "identifier" -resume