From 4276b79277568d775c2178c1b0dc7187c0340b0a Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Sara=20Monz=C3=B3n?= Date: Thu, 25 Apr 2024 17:04:42 +0200 Subject: [PATCH] update plasmidid.md --- bu_isciii/assets/reports/md/plasmidid.md | 1 + 1 file changed, 1 insertion(+) diff --git a/bu_isciii/assets/reports/md/plasmidid.md b/bu_isciii/assets/reports/md/plasmidid.md index 0e9c4b54..90e371d7 100755 --- a/bu_isciii/assets/reports/md/plasmidid.md +++ b/bu_isciii/assets/reports/md/plasmidid.md @@ -25,6 +25,7 @@ Preprocessing is performed using the assembly template. Check that doc for refer Assembly steps are done using the assembly template. Check that doc for reference. ## PlasmidID + [PlasmidID](https://github.com/BU-ISCIII/plasmidID) v1.6.5 is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identification. PlasmidID is a computational pipeline that maps Illumina reads over plasmid database sequences. The k-mer filtered, most covered sequences are clustered by identity to avoid redundancy and the longest are used as scaffold for plasmid reconstruction. Reads are assembled and annotated by automatic and specific annotation. All information generated from mapping, assembly, annotation and local alignment analyses is gathered and accurately represented in a circular image which allow user to determine plasmidic composition in any bacterial sample.