voc_input_omicronNL.json

{
  "base_dir": "C:\\Users\\weesjdamv\\PycharmProjects\\omicron",
    "calcmethod":1,
  "run_name": "voc_runNL",
  "n_samples": 100,
   "startdate": "2021-12-10",
   "enddate": "2022-4-10",
   "tshift": 14,
   "boosterdayx":  [-14, 0,  16, 50],
   "boosterdayn":  [0,  0.7, 3.1, 14.5],
   "demage": [90, 75, 60, 45, 20, 0] ,
  "demn": [ 0,    1.46,    4.51,    8.23, 13.63, 17.7],
  "agegroups_p_vac": [ 0.9,   0.9,    0.85,    0.8, 0.7],
  "w_hosp_age": [8000, 8500, 6000, 2500, 750],
  "r_lockdowndayx":  [0,  10, 13],
  "r_lockdown":  [0.88,  0.88, 0.88],
    "comment": "For all variables below, you can either enter a scalar value, or a description of a distribution: [Uniform, min_value, max_value], [(Log)Normal, mean/median, std_dev], [Triangular, min, peak, max]",
  "r_lockdownscale" : 1,
  "k_voc" : ["Uniform",0.25, 0.3],
   "f0_voc": ["Uniform", -2.5, -2],
 "vac_ratio": ["Uniform",0.9,1.1],
  "p_vac_start": 0.8,
  "p_booster_start": 0.00,
  "startinfperc": ["Uniform",0.75,1.5],
  "startsusceptible":  ["Uniform",0.7,0.75],
    "ts": 4,
  "seir_tlatent": 2,
  "seir_tinf": 5,
  "ve_trans": 0.4,
  "ve_immune_o": 0.33,
  "ve_immune_hosp_o": ["Uniform",0.3,0.7],
  "ve_vac_d": 0.6,
  "ve_vac_o": 0.1,
  "ve_booster_d": 0.9,
  "ve_booster_o": 0.7,
  "ve_vac_hosp_d": 0.9,
  "ve_vac_hosp_o": ["Uniform",0.9,0.95],
   "ve_booster_hosp_d": 0.95,
  "ve_booster_hosp_o": ["Uniform",0.95, 0.98],
    "re0_voc": -1,
  "plot": {
     "plotnames": ["inf", "hosp", "ft", "Rt", "Rtd", "Rtratio", "pu", "pv", "pb"],
     "plottitles": ["infected index (1=start)","daily hospitalized index (1=start)", "VOC prevalence", "Reproduction number", "Rtd", "Rtratio", "pu", "pv", "pb"],
      "plotcolors": ["mistyrose","powderblue", "orange","plum","orange","orange","orange","orange","orange"],
      "plothistograms": false,
     "data": ["NLcases.csv","NLhosp.csv","" ,"","","","","","",""],
     "scales": [1.0, 1.0 ,-1.0,1.0,1.0,1.0, 1.0, 1.0, 1.0],
     "timeshift":[2,5,0, 0,0,0,0,0,0]
  }
}