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Why the change from Picard to BEDtools for BAM to FASTQ conversion? #3

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sufyazi opened this issue Jan 24, 2025 · 0 comments
Open

Why the change from Picard to BEDtools for BAM to FASTQ conversion? #3

sufyazi opened this issue Jan 24, 2025 · 0 comments

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@sufyazi
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sufyazi commented Jan 24, 2025

Hello,

Very neat workflow! Can I ask why you switched from Picard to Bedtools for the bam to fastq conversion? I am just wondering what is the impetus for the change and whether I should do the same with my own processing workflow too.
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