.pre-commit-config.yaml

exclude: ^(external/|venv/|.venv/|tests/|notebooks/|scripts/|src/modules/models/swin/)
repos:
  - repo: https://github.com/pre-commit/pre-commit-hooks
    rev: v4.5.0
    hooks:
      - id: check-ast
      - id: check-json
      - id: pretty-format-json
        args: [--autofix, --no-sort-keys]
      - id: check-symlinks
      - id: check-toml
      - id: check-xml
      - id: check-yaml
      - id: mixed-line-ending
      - id: end-of-file-fixer
      - id: trailing-whitespace
  - repo: https://github.com/abravalheri/validate-pyproject
    rev: v0.15
    hooks:
      - id: validate-pyproject
  - repo: https://github.com/pre-commit/pygrep-hooks
    rev: v1.10.0
    hooks:
      - id: python-check-blanket-noqa
      - id: python-check-blanket-type-ignore
      - id: python-check-mock-methods
      - id: python-no-log-warn
      - id: python-use-type-annotations
  - repo: https://github.com/jackdewinter/pymarkdown
    rev: v0.9.15
    hooks:
      - id: pymarkdown
        args:
          - -d
          - md013
          - scan
  - repo: https://github.com/sphinx-contrib/sphinx-lint
    rev: v0.9.1
    hooks:
      - id: sphinx-lint
        args: [ --enable=default-role ]
  - repo: https://github.com/astral-sh/ruff-pre-commit
    rev: v0.1.9
    hooks:
      - id: ruff
      - id: ruff-format
  - repo: https://github.com/pre-commit/mirrors-mypy
    rev: v1.8.0
    hooks:
      - id: mypy
        additional_dependencies:
          - numpy
          - scikit-learn
          - scikit-image
          - scipy
          - tqdm
          - polars
          - imagecodecs
          - Pillow
          - opencv-python
          - tifffile
          - seaborn
          - matplotlib
          - plotly
          - torch
          - torchaudio
          - torchvision
          - torch-summary
          - open-clip-torch
          - dash
          - dash-bootstrap-components
          - dash-bootstrap-templates
          - rasterio
          - dask
          - dask-glm
          - dask_image
          - dask-ml
          - distributed
          - fsspec
          - segmentation-models-pytorch
          - catboost
          - albumentations
          - typing_extensions
          - annotated-types
          - pandas-stubs
          - traitlets
          - hydra-core
          - wandb
          - randomname
          - coloredlogs
          - kornia
          - einops
        args: [ --disallow-any-generics, --disallow-untyped-defs, --disable-error-code=import-untyped]