test-build-and-publish.yml

name: Test build and publish Cobramod to PyPI
on:
  workflow_dispatch:

  schedule:
    - cron: "0 5 * * 1"

  pull_request:
    types: [ opened, synchronize, reopened, closed ]
    branches:
      - master

jobs:
  lint-format-unittest:
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v4

      - name: Set up Python ${{ matrix.python-version }}
        uses: actions/setup-python@v5
        with:
          python-version: ${{ matrix.python-version }}
          cache: "pip"

      - name: Display Python version
        run: python -c "import sys; print(sys.version)"

      - name: Install dependencies
        run: python -m pip install .

      - name: Install tox
        run: python -m pip install tox-gh>=1.2

      - name: Setup test suite
        run: tox -vv --notest

      - name: Credentials
        run: echo "${{ secrets.BIOCYC_USER }}\n${{ secrets.BIOCYC_PASS }}" >> credentials.txt

      - name: Run test suite
        run: tox --skip-pkg-install

  build-publish:
    needs: [lint-format-unittest]
    name: Build and publish the package to TestPyPI
    if: github.event.pull_request.merged == true && github.event_name != 'schedule'
    runs-on: ubuntu-latest

    steps:
    - uses: actions/checkout@v4

    - name: Set up Python
      uses: actions/setup-python@v5
      with:
        python-version: "3.10"
        cache: "pip"

    - name: Install dependencies
      run: |
        python -m pip install --upgrade pip setuptools wheel twine build

    - name: Build package
      run: python -m build
    - name: Check the package
      run: twine check dist/*
    - name: Publish to PyPI
      env:
        TWINE_USERNAME: ${{ secrets.PYPI_USERNAME }}
        TWINE_PASSWORD: ${{ secrets.PYPI_PASSWORD }}
      run:
        twine upload --non-interactive dist/*