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Is your feature request related to a problem? Please describe.
This project is currently maintained and developed by @G-kodes. Good ven the scope and capacity for word, a CI implementation would help greatly in managing code development and issue debugging. It would also help a lot for reproducibility for research purposes.
Describe the solution you'd like
Use Genome-In-A-Bottle to create a CI implementation for GitHub Actions.
.
The text was updated successfully, but these errors were encountered:
An initial CI pipeline has been enabled. Unfortunately of the three possible tests, only 1 works.
Lint (--lint)
Build DAG (--dry-run)
Run generated unit tests (run from inside .tests folder)
I have noted the un-mentioned issue regarding the Unit Tests that prevents users who use relative paths in their Snakefile at snakemake/snakemake-github-action#18.
The issue around the lint profile is currently under some discussion with multiple issues around their linters. The most promising and related issue is snakemake/snakemake#881.
Is your feature request related to a problem? Please describe.
This project is currently maintained and developed by @G-kodes. Good ven the scope and capacity for word, a CI implementation would help greatly in managing code development and issue debugging. It would also help a lot for reproducibility for research purposes.
Describe the solution you'd like
Use Genome-In-A-Bottle to create a CI implementation for GitHub Actions.
.
The text was updated successfully, but these errors were encountered: