EPACTS-3.3.0_install

#!/usr/bin/env bash

###############################################
# Installing EPACTS 3.3.0
#
# by Brian Alston, June 2018
#
# Using Ian's require function to load modules
#
# 

VERSION=${VERSION:-3.3.0}
INSTALL_PREFIX=${INSTALL_PREFIX:-/shared/ucl/apps/EPACTS/${VERSION}}
SRC_ARCHIVE=${SRC_ARCHIVE:- https://github.com/statgen/EPACTS.git}

export PATH=$INSTALL_PREFIX/bin:$PATH

dirname=$(dirname $0 2>/dev/null || pwd)
INCLUDES_DIR=${INCLUDES_DIR:-${dirname}/includes}
source ${INCLUDES_DIR}/module_maker_inc.sh
source ${INCLUDES_DIR}/require_inc.sh

require gcc-libs/4.9.2
require compilers/gnu/4.9.2
require r/recommended
require gnuplot/5.0.1
require groff/1.22.3/gnu-4.9.2
require autoconf/2.69
require automake/1.16.1

temp_dir=`mktemp -d -p /dev/shm`
# temp_dir='/home/ccspapp/Software/EPACTS'
echo "Building in $temp_dir ..."
cd $temp_dir
module list
read -p "Press [Enter] key to start ..."

cd $temp_dir

git clone $SRC_ARCHIVE

cd EPACTS
aclocal
autoconf
automake --add-missing
./configure --prefix=$INSTALL_PREFIX
make

# No make check provided.

make install