From ac0e0e2b7505dcdff8cd8e75a7680a1eaa6cf6f5 Mon Sep 17 00:00:00 2001 From: gvegayon Date: Sun, 12 May 2024 00:40:12 +0000 Subject: [PATCH] Commit from GitHub Actions (Build it) --- README.md | 200 +++++++++++++++++++++++++++--------------------------- 1 file changed, 99 insertions(+), 101 deletions(-) diff --git a/README.md b/README.md index 92fab3b..0375737 100644 --- a/README.md +++ b/README.md @@ -9,151 +9,149 @@ document updated once a week or whenever there’s a push or pull request. It performs a search on PubMed looking for the latest papers about Agent-Based Models. The last -update was on 2024-05-05 00:38:56. +update was on 2024-05-12 00:40:10.
-1. **Impact of Tissue Damage and Hemodynamics on Restenosis Following - Percutaneous Transluminal Angioplasty: A Patient-Specific Multiscale - Model.** +1. **Mechanics limits ecological diversity and promotes heterogeneity + in confined bacterial communities.** - Corti A, Marradi M, Çelikbudak Orhon C, Boccafoschi F, Büchler P, - Rodriguez Matas JF, Chiastra C. + Ma T, Rothschild J, Halabeya F, Zilman A, Milstein JN. - Ann Biomed Eng. 2024 May 3. doi: 10.1007/s10439-024-03520-1. Online - ahead of print. + Proc Natl Acad Sci U S A. 2024 May 14;121(20):e2322321121. doi: + 10.1073/pnas.2322321121. Epub 2024 May 10. - > Multiscale agent-based modeling frameworks have recently emerged - > as promising mechanobiological models to capture the interplay - > between biomechanical forces, cellular behavior, and molecular - > pathways underlying restenosis following percutaneous translu … + > However, the role of mechanical interactions in shaping the + > ecology is still poorly understood. Here, we study a model system + > consisting of two populations of nonmotile Escherichia coli + > bacteria competing within open, monolayer microchannels. …A more + > coccus morphology is … -2. **Visual social information use in collective foraging.** +2. **Can Generative AI improve social science?** - Mezey D, Deffner D, Kurvers RHJM, Romanczuk P. + Bail CA. - PLoS Comput Biol. 2024 May 3;20(5):e1012087. doi: - 10.1371/journal.pcbi.1012087. Online ahead of print. + Proc Natl Acad Sci U S A. 2024 May 21;121(21):e2314021121. doi: + 10.1073/pnas.2314021121. Epub 2024 May 9. - > Using collective foraging to study the key trade-off between - > personal and social information use, we present a mechanistic, - > spatially-explicit agent-based model that combines - > individual-level evidence accumulation of personal and (visual) - > social cues with par … + > I argue Generative AI has the potential to improve survey + > research, online experiments, automated content analyses, + > agent-based models, and other techniques commonly used to study + > human behavior. … -3. **Approximate inference for longitudinal mechanistic HIV contact - network.** +3. **Towards early diagnosis of Alzheimer’s disease: advances in + immune-related blood biomarkers and computational approaches.** - Smiley O, Hoffmann T, Onnela JP. + Krix S, Wilczynski E, Falgàs N, Sánchez-Valle R, Yoles E, Nevo U, + Baruch K, Fröhlich H. - Appl Netw Sci. 2024;9(1):12. doi: 10.1007/s41109-024-00616-4. Epub - 2024 Apr 30. + Front Immunol. 2024 Apr 23;15:1343900. doi: + 10.3389/fimmu.2024.1343900. eCollection 2024. - > Network models are increasingly used to study infectious disease - > spread. Exponential Random Graph models have a history in this - > area, with scalable inference methods now available. …Combining - > mechanistic models with Approximate Bayesian Computation allows f - > … + > Here, we give a background on recent advances in research on + > brain-immune system cross-talk in Alzheimer’s disease and review + > machine learning approaches, which can combine multiple biomarkers + > with further information (e.g. age, sex, APOE genotype) into + > predictive models s … -4. **Predator-prey interactions across hunting mode, spatial domain - size, and habitat complexities.** +4. **Uncovering physical activity trade-offs in transportation policy: + A spatial agent-based model of Bogota, Colombia.** - Orrick K, Sommer N, Rowland F, Ferraro K. + Stankov I, Meisel JD, Sarmiento OL, Delclòs-Alió X, Hidalgo D, + Guzman LA, Rodriguez DA, Hammond RA, Diez Roux AV. - Ecology. 2024 May 1:e4316. doi: 10.1002/ecy.4316. Online ahead of - print. + Int J Behav Nutr Phys Act. 2024 May 8;21(1):54. doi: + 10.1186/s12966-024-01570-1. - > Theory suggests that the emergence and subsequent predominance of - > consumptive or NCEs depend on the given habitat’s complexity as - > well as predator hunting mode and spatial domain sizes of both - > predator and prey, but their relative influence on the outcome of - > predator-prey interac … + > BACKGROUND: Transportation policies can impact health outcomes + > while simultaneously promoting social equity and environmental + > sustainability. We developed an agent-based model (ABM) to + > simulate the impacts of fare subsidies and congestion taxes on + > commuter de … -5. **The health equity implications of the Health Resources and - Services Administration’s Ryan White HIV/AIDS Program.** +5. **The impact of mobility costs on cooperation and welfare in spatial + social dilemmas.** - Goyal R, Hotchkiss J, Gilman B, Klein PW, Mills RJ, Starling J, - Martin NK, Patton T, Cohen SM, Cheever L. + Bara J, Santos FP, Turrini P. - AIDS. 2024 Jun 1;38(7):1025-1032. doi: 10.1097/QAD.0000000000003836. - Epub 2024 Jan 11. + Sci Rep. 2024 May 8;14(1):10572. doi: 10.1038/s41598-024-60806-z. - > OBJECTIVE: Investigate the role of the Ryan White HIV/AIDS Program - > (RWHAP) - which funds services for vulnerable and historically - > disadvantaged populations with HIV - in reducing health inequities - > among people with HIV over a 10-year horizon. DESIGN: We use an - > agent-bas … + > Importantly, agents can pay a cost to move to a cleaner site. Both + > analytically and through agent-based simulations we find that, in + > general, introducing mobility costs increases pollution felt in + > the limit of fast movement (equivalently slow strategy revision). + > … -6. **Decentralized multi-agent reinforcement learning based on - best-response policies.** +6. **Impact of interventions to reduce nosocomial transmission of + SARS-CoV-2 in English NHS Trusts: a computational modelling study.** - Gabler V, Wollherr D. + Evans S, Stimson J, Pople D, White PJ, Wilcox MH, Robotham JV. - Front Robot AI. 2024 Apr 16;11:1229026. doi: - 10.3389/frobt.2024.1229026. eCollection 2024. + BMC Infect Dis. 2024 May 7;24(1):475. doi: + 10.1186/s12879-024-09330-z. - > Our approach decouples the MARL problem into a set of distributed - > agents that model the other agents as responsive entities. In - > particular, we propose using two separate critics per agent to - > distinguish between the joint task reward and agent-based costs as - > c … + > A panel of experts in infection prevention and control informed + > intervention choice and helped ensure the model reflected + > implementation in practice. Model parameters and associated + > uncertainty were derived using national and local data, literature + > review and formal … -7. **Integrative analysis of yeast colony growth.** +7. **Utilizing Agent-Based Modeling for Optimization of Wayfinding in + Hospital: A Case Study.** - Gaizer T, Juhász J, Pillér B, Szakadáti H, Pongor CI, Csikász-Nagy - A. + Khasraghi GS, Nejat A. - Commun Biol. 2024 Apr 29;7(1):511. doi: 10.1038/s42003-024-06218-1. + HERD. 2024 May 6:19375867241248593. doi: 10.1177/19375867241248593. + Online ahead of print. - > We present the developement and parameterization of a quantitative - > agent-based model for yeast colony growth to reproduce - > measurements on colony size and cell number in a colony at - > non-standard environmental conditions. …We show that initial - > colony spread, … + > Although architectural design can aid in simplifying user access, + > existing approaches lack a specific focus on wayfinding + > optimization despite its significant impact on users’ navigational + > abilities. METHODS: In this study, an agent-based model was + > employed t … -8. **Agent-based modeling in cancer biomedicine: applications and tools - for calibration and validation.** +8. **Subtractive proteomics-guided vaccine targets identification and + designing of multi-epitopes vaccine for immune response instigation + against Burkholderia pseudomallei.** - Cogno N, Axenie C, Bauer R, Vavourakis V. + Alshabrmi FM, Alatawi EA. - Cancer Biol Ther. 2024 Dec 31;25(1):2344600. doi: - 10.1080/15384047.2024.2344600. Epub 2024 Apr 28. + Int J Biol Macromol. 2024 May 4:132105. doi: + 10.1016/j.ijbiomac.2024.132105. Online ahead of print. - > Agent-based models and simulations are especially interesting - > candidates among computational modeling procedures in cancer - > research due to the capability to, for instance, recapitulate the - > dynamics of neoplasia and tumor - host interactions. …We cons … + > In this study, a methodical workflow using subtractive proteomics, + > vaccine designing, molecular simulation, and agent-based modeling + > approaches were used to annotate the whole proteome of + > Burkholderia pseudomallei (strain K96243) for vaccine designing. + > …Fut … -9. **Spatial transcriptome-guided multi-scale framework connects P. - aeruginosa metabolic states to oxidative stress biofilm - microenvironment.** +9. **Multi-agent simulation of doughnut deep fat frying considering two + domain heating media and sample flipping.** - Kuper TJ, Islam MM, Peirce-Cottler SM, Papin JA, Ford RM. + Ghaitaranpour A, Koocheki A, Mohebbi M. - PLoS Comput Biol. 2024 Apr 26;20(4):e1012031. doi: - 10.1371/journal.pcbi.1012031. eCollection 2024 Apr. + Curr Res Food Sci. 2024 Apr 25;8:100751. doi: + 10.1016/j.crfs.2024.100751. eCollection 2024. - > With the generation of spatially resolved transcriptomics of - > microbial biofilms, computational tools can be used to integrate - > this data to elucidate the multi-scale mechanisms controlling - > heterogeneous biofilm metabolism. This work presents a Multi-scale - > model of Metabolis … + > Two domain heating media and sample flipping during processing + > were considered when developing an agent-based model to explain + > coupled heat and mass transfer phenomena during deep fat frying of + > doughnuts. The model was validated by comparing the moistu … -10. **Screening Strategies to Reduce COVID-19 Mortality in Nursing - Homes.** +10. **A seven-step guide to spatial, agent-based modelling of tumour + evolution.** - Dong S, Jutkowitz E, Giardina J, Bilinski A. + Colyer B, Bak M, Basanta D, Noble R. - JAMA Health Forum. 2024 Apr 5;5(4):e240688. doi: - 10.1001/jamahealthforum.2024.0688. + Evol Appl. 2024 May 2;17(5):e13687. doi: 10.1111/eva.13687. + eCollection 2024 May. - > OBJECTIVE: To evaluate the cost-effectiveness of screening - > strategies in reducing COVID-19 mortality in nursing homes. DESIGN - > AND SETTING: An agent-based model was developed to simulate - > SARS-CoV-2 transmission in the nursing home setting. …The - > population us … + > Spatial agent-based models are frequently used to investigate the + > evolution of solid tumours subject to localized cell-cell + > interactions and microenvironmental heterogeneity. …Our guide is + > aimed at both aspiring modellers and other biologists and onc … ## Code of Conduct