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signal_separation.sh
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#!/bin/bash
# THIS SCRIPT DOES THE PREPROCESSING AND EXECUTES THE PYTHON SCRIPT TO
# SEPARATE LOCAL, NON-LOCAL AND TOTAL IMPACTS OF LCLM CHANGE FOR
# LAMACLIMA WP1 SIMULATIONS: CTL, CROP, IRR, FRST, HARV
# BEFORE EXECUTING THE SCRIPT DEFINE THE FOLLOWING VARIABLES BELOW:
# 1. METHOD
# 2. ESM MODEL
# 3. CMOR TABLE ID (--> TEMPORAL RESOLUTION)
# 4. CMORvar
# 5. SCENARIO COMBINATION
# THE SCRIPT WILL SAVE THE OUTPUT TO:
# /scratch/b/b380948/signal_separation/<SCENARIO COMBINATION>/<CMOR TABLE ID>/<CMORvar>/*<ESM MODEL>.nc
# EXECUTE THIS SCRIPT VIA: sbatch signal_seperation.sh
#SBATCH --job-name=signal_separation # Specify job name
#SBATCH --partition=shared # Specify partition name
#SBATCH --ntasks=2 # Specify max. number of tasks to be invoked
#SBATCH --cpus-per-task=16 # Specify number of CPUs per task
#SBATCH --time=04:00:00 # Set a limit on the total run time
#SBATCH --account=bm1147 # Charge resources on this project account
#SBATCH --output=signal_separation_TSA_irr-ctl_3hr_absolute_values_scen.out # File name for standard output
#SBATCH --error=signal_separation_TSA_irr-ctl_3hr_absolute_values_scen.out # File name for standard error output
# Bind your OpenMP threads --> I have to admit I have no idea if that's needed or what is happening here....
export OMP_NUM_THREADS=8
export KMP_AFFINITY=verbose,granularity=core,compact,1
export KMP_STACKSIZE=64m
module unload python
module load python/.3.5.2
METHOD="multi-year_mean_signal" #, "absolute_values_ctl", "absolute_values_scen", "multi-year_mean_signal", "each_timestep_signal"
MODEL="cesm" #, "cesm" "ecearth" "mpiesem"
CMOR_TABLE="Amon" # "Lmon" "LImon" "Emon" "Eyr" "Lmon";
#CMOR_VAR_LIST="cLitter cVeg cProduct" # Lmon
#CMOR_VAR_LIST="cSoil cLand" # Emon
#CMOR_VAR_LIST="FSH EFLX_LH_TOT HEAT_FROM_AC TG TSA FIRE "
# CMOR_VAR_LIST="gpp npp nbp ra rh"
#CMOR_VAR_LIST="ts_ebal_x ts_ebal_n ts_ebal_meandaymax ts_ebal_meandaymin DTR"
# CMOR_VAR_LIST="TSA TG EFLX_LH_TOT FSH PRECC PRECL WIND Q2M" # cesm model output data used with cesm table
#CMOR_VAR_LIST="wbgtid_iso_400W wbgtod_iso_400W"
CMOR_VAR_LIST="wbgtid wbgtod"
#CMOR_VAR_LIST="TREFHT QREFHT TS SHFLX LHFLX"
#CMOR_VAR_LIST="tas ts prc hfss hfls hurs pr huss"
#CMOR_VAR_LIST="TS TREFHT SHFLX LHFLX QREFHT PRECC PRECL"
#CMOR_VAR_LIST="FSDS FSR WBT Q2M RH2M TG"
CMOR_VAR_LIST="TSMN TSMX TREFHTMX TREFHTMN TSMNAVG TSMXAVG"
#CMOR_VAR_LIST="TSA TG TS_ebal FSDS FSR FLDS FIRE FSH EFLX_LH_TOT FGR FSM WASTEHEAT HEAT_FROM_AC"
#CMOR_VAR_LIST="ts_ebal SWout LWout albedo" # tasmax hurs"
#CMOR_VAR_LIST="sshf slhf ssrd ssr strd str"
#CMOR_VAR_LIST="ts_ebal rlds rlus rsds rsus tas ts hfss hfls albedo"
SIM1="frst" # "frst" "crop" "irr" "harv"
SIM2="ctl" # "ctl" "crop" "frst"
SCENARIO_COMBNATION="${SIM1}-${SIM2}" #, "irr-crop" "irr-ctl" "frst-ctl" "harv-frst" "harv-ctl"
agg="none" # default: none, avg, seas ; currently only for monthly data
# CDO COMMAND FOR MULTI-YEAR MEAN
if [ "${CMOR_TABLE}" == "Amon" ] || [ "${CMOR_TABLE}" == "Emon" ] || [ "${CMOR_TABLE}" == "Lmon" ] || [ "${CMOR_TABLE}" == "LImon" ] || [ "${CMOR_TABLE}" == "Omon" ]; then
if [ "${agg}" == "none" ]; then
CDO_COMMAND_1="ymonmean"
CDO_COMMAND_2_ADD="ymonadd"
CDO_COMMAND_2_SUB="ymonsub"
# PARAMS FOR cdo splitsel TO DIVIDE DATASET INTO 30 YEAR SLICES...
# AND REMOVE FIRST 10 YEARS OF "SPIN-UP"
NSETS=$((12*30))
NOFFSET=$((12*10))
elif [ "${agg}" == 'avg' ]; then
CDO_COMMAND_1="timmean"
CDO_COMMAND_2_ADD="add"
CDO_COMMAND_2_SUB="sub"
echo $agg
# PARAMS FOR cdo splitsel TO DIVIDE DATASET INTO 30 YEAR SLICES...
# AND REMOVE FIRST 10 YEARS OF "SPIN-UP"
NSETS=$((12*30))
NOFFSET=$((12*10))
elif [ "${agg}" == 'seas' ]; then
CDO_COMMAND_1="seasmean"
CDO_COMMAND_2_ADD="add"
CDO_COMMAND_2_SUB="sub"
echo $agg
# PARAMS FOR cdo splitsel TO DIVIDE DATASET INTO 30 YEAR SLICES...
# AND REMOVE FIRST 10 YEARS OF "SPIN-UP"
NSETS=$((12*30))
NOFFSET=$((12*10))
fi
elif [ "${CMOR_TABLE}" == "Eyr" ] || [ "${CMOR_TABLE}" == "Oyr" ] || [ "${CMOR_TABLE}" == "extremes" ] || [ "${CMOR_TABLE}" == "Eyrmin" ] || [ "${CMOR_TABLE}" == "Eyrmax" ]; then
CDO_COMMAND_1="timmean"
CDO_COMMAND_2_ADD="add"
CDO_COMMAND_2_SUB="sub"
# PARAMS FOR cdo splitsel TO DIVIDE DATASET INTO 30 YEAR SLICES...
# AND REMOVE FIRST 10 YEARS OF "SPIN-UP"
NSETS=30
NOFFSET=10
elif [ "${CMOR_TABLE}" == "3hr" ] || [ "${CMOR_TABLE}" == "6hrLev" ] || [ "${CMOR_TABLE}" == "6hrPlev" ] || [ "${CMOR_TABLE}" == "6hrPlevPt" ] || [ "${CMOR_TABLE}" == "E3hr" ] || [ "${CMOR_TABLE}" == "E3hrPt" ]; then
CDO_COMMAND_1="yhourmean"
CDO_COMMAND_2_ADD="yhouradd"
CDO_COMMAND_2_SUB="yhoursub"
# PARAMS FOR cdo splitsel TO DIVIDE DATASET INTO 30 YEAR SLICES...
# AND REMOVE FIRST TEN YEARS OF "SPIN-UP"
if [ "${CMOR_TABLE}" == "3hr" ] || [ "${CMOR_TABLE}" == "E3hr" ] || [ "${CMOR_TABLE}" == "E3hrPt" ]; then
NSETS=$((365*8*30))
NOFFSET=$((365*8*10))
else # 6hr
NSETS=$((365*4*30))
NOFFSET=$((365*4*10))
fi
elif [ "${CMOR_TABLE}" == "CFday" ] || [ "${CMOR_TABLE}" == "day" ] || [ "${CMOR_TABLE}" == "Eday" ] || [ "${CMOR_TABLE}" == "Oday" ] || [ "${CMOR_TABLE}" == "dayx" ] || [ "${CMOR_TABLE}" == "dayn" ]; then
CDO_COMMAND_1="ydaymean"
CDO_COMMAND_2_ADD="ydayadd"
CDO_COMMAND_2_SUB="ydaysub"
NSETS=$((365*30))
NOFFSET=$((365*10))
fi
for CMOR_VAR in ${CMOR_VAR_LIST}; do
#[ "$SCENARIO_COMBNATION" == "crop-ctl" ] &&
if [ "${MODEL}" == "mpiesm" ]; then
DIR1=/scratch/b/b381334/signal_separation/mpi_output/${SIM1}/${CMOR_TABLE}
DIR2=/scratch/b/b381334/signal_separation/mpi_output/${SIM2}/${CMOR_TABLE}
CDO_STARTDATE=2025-01-01-00:00:00
CDO_ENDDATE=2174-12-31-23:59:59
elif [ "${MODEL}" == "cesm" ]; then
DIR1=/scratch/b/b381334/signal_separation/cesm_output/${SIM1}/${CMOR_TABLE}
DIR2=/scratch/b/b381334/signal_separation/cesm_output/${SIM2}/${CMOR_TABLE}
CDO_STARTDATE=0011-01-01-00:00:00
CDO_ENDDATE=0160-12-31-23:59:59
elif [ "${MODEL}" == "ecearth" ]; then
DIR1=/scratch/b/b381334/signal_separation/ecearth_output/${SIM1}/${CMOR_TABLE}
DIR2=/scratch/b/b381334/signal_separation/ecearth_output/${SIM2}/${CMOR_TABLE}
CDO_STARTDATE=2025-01-01-00:00:00
CDO_ENDDATE=2174-12-31-23:59:59
fi
SCRATCH="/scratch/b/b381334/signal_separation"
# CREATE TEMPORARY FOLDERS ON SCRATCH TO SAFE THE DATA
if [ ! -d "${SCRATCH}" ]; then
echo "Folder ${SCRATCH} does not exist and will be made."
mkdir $SCRATCH
fi
cd $SCRATCH
if [ ! -d "${SCENARIO_COMBNATION}" ]; then
echo "Folder ${SCRATCH}/${SCENARIO_COMBNATION} does not exist and will be made."
mkdir ${SCENARIO_COMBNATION}
else
echo "Folder ${SCRATCH}/${SCENARIO_COMBNATION} already exists."
fi
cd ${SCENARIO_COMBNATION}
if [ ! -d "${CMOR_TABLE}" ]; then
echo "Folder ${CMOR_TABLE} does not exist and will be made."
mkdir ${CMOR_TABLE}
else
echo "Folder ${CMOR_TABLE} already exists."
fi
cd ${CMOR_TABLE}
if [ ! -d "${CMOR_VAR}" ]; then
echo "Folder ${CMOR_VAR} does not exist and will be made."
mkdir ${CMOR_VAR}
else
echo "Folder ${CMOR_VAR} already exists."
fi
cd ${CMOR_VAR}
# IF ONE OF THE FILES DO NOT ALREADY EXISTS JUST CREATE BOTH
if [ ! -f ${CMOR_VAR}_${SIM1}_${MODEL}.nc ] && [ ! -f ${CMOR_VAR}_${SIM2}_${MODEL}.nc ] && [ ! -f ${CMOR_VAR}_${SIM1}_${MODEL}_150-years.nc ] && [ ! -f ${CMOR_VAR}_${SIM2}_${MODEL}_150-years.nc ]; then
# COPY AND MERGE ALL MODEL OUTPUT FILES
if [ "${MODEL}" == "mpiesm" ]; then
FILES1=`find ${DIR1}/${CMOR_VAR}/* -name "${CMOR_VAR}*"`
FILES2=`find ${DIR2}/${CMOR_VAR}/* -name "${CMOR_VAR}*"`
echo $DIR1
echo $CMOR_VAR
cdo mergetime ${FILES1} ${CMOR_VAR}_${SIM1}_${MODEL}.nc
cdo mergetime ${FILES2} ${CMOR_VAR}_${SIM2}_${MODEL}.nc
echo ${CMOR_VAR}_${SIM1}_${MODEL}.nc
echo ${CMOR_VAR}_${SIM2}_${MODEL}.nc
if [ "${CMOR_TABLE}" == "Amon" ] && [ "$SCENARIO_COMBNATION" == "frst-ctl" ] ; then
#ncks -O -d time,10,160 ${CMOR_VAR}_${SIM2}_${MODEL}.nc ${CMOR_VAR}_${SIM2}_${MODEL}.nc # for FRST-CTL && yearly data signal separation
ncks -O -d time,120,1931 ${CMOR_VAR}_${SIM2}_${MODEL}.nc ${CMOR_VAR}_${SIM2}_${MODEL}.nc # for FRST-CTL && monthly data separation
elif [ "${CMOR_TABLE}" == "Amon" ] && [ "$SCENARIO_COMBNATION" == "harv-frst" ] ; then
#ncks -O -d time,30,149 ${CMOR_VAR}_${SIM2}_${MODEL}.nc ${CMOR_VAR}_${SIM2}_${MODEL}.nc # for HARV-FRST && yearly data separation
ncks -O -d time,360,1799 ${CMOR_VAR}_${SIM2}_${MODEL}.nc ${CMOR_VAR}_${SIM2}_${MODEL}.nc # for HARV-FRST && monthly data separation
echo ${CMOR_VAR}_${SIM2}_${MODEL}.nc
elif [ "${CMOR_TABLE}" == "Lmon" ] && [ "$SCENARIO_COMBNATION" == "frst-ctl" ] ; then
#ncks -O -d time,10,160 ${CMOR_VAR}_${SIM2}_${MODEL}.nc ${CMOR_VAR}_${SIM2}_${MODEL}.nc # for FRST-CTL && yearly data signal separation
ncks -O -d time,120,1931 ${CMOR_VAR}_${SIM2}_${MODEL}.nc ${CMOR_VAR}_${SIM2}_${MODEL}.nc # for FRST-CTL && monthly data separation
elif [ "${CMOR_TABLE}" == "Lmon" ] && [ "$SCENARIO_COMBNATION" == "harv-frst" ] ; then
#ncks -O -d time,30,149 ${CMOR_VAR}_${SIM2}_${MODEL}.nc ${CMOR_VAR}_${SIM2}_${MODEL}.nc # for HARV-FRST && yearly data separation
ncks -O -d time,360,1799 ${CMOR_VAR}_${SIM2}_${MODEL}.nc ${CMOR_VAR}_${SIM2}_${MODEL}.nc # for HARV-FRST && monthly data separation
echo ${CMOR_VAR}_${SIM2}_${MODEL}.nc
elif [ "${CMOR_TABLE}" == "Amon" ] && [ "$SCENARIO_COMBNATION" == "crop-frst" ] ; then
#ncks -O -d time,10,160 ${CMOR_VAR}_${SIM1}_${MODEL}.nc ${CMOR_VAR}_${SIM1}_${MODEL}.nc # for FRST-CTL && yearly data signal separation
ncks -O -d time,120,1931 ${CMOR_VAR}_${SIM1}_${MODEL}.nc ${CMOR_VAR}_${SIM1}_${MODEL}.nc # for FRST-CTL && monthly data separation
elif [ "${CMOR_TABLE}" == "6hrPlev" ] && [ "$SCENARIO_COMBNATION" == "crop-frst" ] ; then
#ncks -O -d time,10,160 ${CMOR_VAR}_${SIM1}_${MODEL}.nc ${CMOR_VAR}_${SIM1}_${MODEL}.nc # for FRST-CTL && yearly data signal separation
ncks -O -d time,14400,230400 ${CMOR_VAR}_${SIM1}_${MODEL}.nc ${CMOR_VAR}_${SIM1}_${MODEL}.nc # for FRST-CTL && monthly data separation
elif [ "${CMOR_TABLE}" == "6hrPlev" ] && [ "$SCENARIO_COMBNATION" == "frst-ctl" ] ; then
#ncks -O -d time,10,160 ${CMOR_VAR}_${SIM1}_${MODEL}.nc ${CMOR_VAR}_${SIM1}_${MODEL}.nc # for FRST-CTL && yearly data signal separation
ncks -O -d time,14400,230400 ${CMOR_VAR}_${SIM2}_${MODEL}.nc ${CMOR_VAR}_${SIM2}_${MODEL}.nc # for FRST-CTL && monthly data separation
fi
# COPY ALL MODEL OUTPUT FILES
elif [ "${MODEL}" == "cesm" ]; then
FILES1=`find ${DIR1}/* -name "${CMOR_VAR}_*"`
FILES2=`find ${DIR2}/* -name "${CMOR_VAR}_*"`
echo $DIR1
echo $DIR2
echo $FILES1
echo $FILES2
cp ${FILES1} ${CMOR_VAR}_${SIM1}_${MODEL}.nc
cp ${FILES2} ${CMOR_VAR}_${SIM2}_${MODEL}.nc
if [ "${CMOR_TABLE}" == "Lmon" ] && [ "$SCENARIO_COMBNATION" == "harv-frst" ] ; then
#ncks -O -d time,30,149 ${CMOR_VAR}_${SIM2}_${MODEL}.nc ${CMOR_VAR}_${SIM2}_${MODEL}.nc # for HARV-FRST && yearly data separation
ncks -O -d time,360,1799 ${CMOR_VAR}_${SIM2}_${MODEL}.nc ${CMOR_VAR}_${SIM2}_${MODEL}.nc # for HARV-FRST && monthly data separation
ncks -O -d time,360,1799 ${CMOR_VAR}_${SIM1}_${MODEL}.nc ${CMOR_VAR}_${SIM1}_${MODEL}.nc
elif [ "${CMOR_TABLE}" == "Amon" ] && [ "$SCENARIO_COMBNATION" == "harv-frst" ] ; then
#ncks -O -d time,30,149 ${CMOR_VAR}_${SIM2}_${MODEL}.nc ${CMOR_VAR}_${SIM2}_${MODEL}.nc # for HARV-FRST && yearly data separation
ncks -O -d time,360,1799 ${CMOR_VAR}_${SIM2}_${MODEL}.nc ${CMOR_VAR}_${SIM2}_${MODEL}.nc # for HARV-FRST && monthly data separation
ncks -O -d time,360,1799 ${CMOR_VAR}_${SIM1}_${MODEL}.nc ${CMOR_VAR}_${SIM1}_${MODEL}.nc
fi
# COPY ALL MODEL OUTPUT FILES
elif [ "${MODEL}" == "ecearth" ]; then
FILES1=`find ${DIR1}/* -name "${CMOR_VAR}_*"`
FILES2=`find ${DIR2}/* -name "${CMOR_VAR}_*"`
echo $DIR1
echo $DIR2
echo $FILES1
echo $FILES2
cp ${FILES1} ${CMOR_VAR}_${SIM1}_${MODEL}.nc
cp ${FILES2} ${CMOR_VAR}_${SIM2}_${MODEL}.nc
if [ "${CMOR_TABLE}" == "Lmon" ] && [ "$SCENARIO_COMBNATION" == "harv-frst" ] ; then
#ncks -O -d time,30,149 ${CMOR_VAR}_${SIM2}_${MODEL}.nc ${CMOR_VAR}_${SIM2}_${MODEL}.nc # for HARV-FRST && yearly data separation
ncks -O -d time,360,1799 ${CMOR_VAR}_${SIM2}_${MODEL}.nc ${CMOR_VAR}_${SIM2}_${MODEL}.nc # for HARV-FRST && monthly data separation
ncks -O -d time,360,1799 ${CMOR_VAR}_${SIM1}_${MODEL}.nc ${CMOR_VAR}_${SIM1}_${MODEL}.nc
elif [ "${CMOR_TABLE}" == "Amon" ] && [ "$SCENARIO_COMBNATION" == "harv-frst" ] ; then
#ncks -O -d time,30,149 ${CMOR_VAR}_${SIM2}_${MODEL}.nc ${CMOR_VAR}_${SIM2}_${MODEL}.nc # for HARV-FRST && yearly data separation
ncks -O -d time,360,1799 ${CMOR_VAR}_${SIM2}_${MODEL}.nc ${CMOR_VAR}_${SIM2}_${MODEL}.nc # for HARV-FRST && monthly data separation
ncks -O -d time,360,1799 ${CMOR_VAR}_${SIM1}_${MODEL}.nc ${CMOR_VAR}_${SIM1}_${MODEL}.nc
fi
fi
# CHECK NUMBER OF LEVELS (FOR JUST ONE SCENARIO) AND STOP SCRIPT WHEN MORE THAN ONE LEVEL
NLEVELS='cdo nlevel ${CMOR_VAR}_${SIM1}_${MODEL}.nc'
if [ ${NLEVELS} -gt 1 ]; then
echo "Input data set has ${NLEVELS} instead of just 1 level. Please split the file into ${NLEVELS} separate files each containing one level."
exit 1
# for i in $(seq 1 $NLEVELS); do echo $i; done
fi
if [ "${METHOD}" == "absolute_values_ctl" ] || [ "${METHOD}" == "multi-year_mean_signal" ] || [ "${METHOD}" == "absolute_values_scen" ]; then
# SEPARATE VARIABLES INTO TIME 5x30 YEARS TIME SLICES AND REMOVE SPINUP
# NAMING: ${CMOR_VAR}_${SIM1}_${MODEL}000000.nc to ${CMOR_VAR}_${SIM1}_${MODEL}000004.nc
cdo seldate,${CDO_STARTDATE},${CDO_ENDDATE} ${CMOR_VAR}_${SIM1}_${MODEL}.nc ${CMOR_VAR}_${SIM1}_${MODEL}_150-years.nc
cdo seldate,${CDO_STARTDATE},${CDO_ENDDATE} ${CMOR_VAR}_${SIM2}_${MODEL}.nc ${CMOR_VAR}_${SIM2}_${MODEL}_150-years.nc
rm ${CMOR_VAR}_${SIM1}_${MODEL}.nc ${CMOR_VAR}_${SIM2}_${MODEL}.nc
# cdo splitsel,${NSETS},${NOFFSET} ${CMOR_VAR}_${SIM1}_${MODEL}.nc ${CMOR_VAR}_${SIM1}_${MODEL}
# cdo splitsel,${NSETS},${NOFFSET} ${CMOR_VAR}_${SIM2}_${MODEL}.nc ${CMOR_VAR}_${SIM2}_${MODEL}
cdo splitsel,${NSETS} ${CMOR_VAR}_${SIM1}_${MODEL}_150-years.nc ${CMOR_VAR}_${SIM1}_${MODEL}
cdo splitsel,${NSETS} ${CMOR_VAR}_${SIM2}_${MODEL}_150-years.nc ${CMOR_VAR}_${SIM2}_${MODEL}
fi
else
echo "Files ${CMOR_VAR}_${SIM1}_${MODEL}.nc and ${CMOR_VAR}_${SIM2}_${MODEL}.nc already exist."
fi
# WHICH SIGNAL SEPARATION TO PERFORM?
# Equation (2) from Winckler et al.2019 ESD:
# delta_total = delta_local + delta_nonlocal
# with delta == SCEN - CTL, the equation can be rearranged to:
# SCEN_total - CTL = (SCEN_local - CTL) + (SCEN_nonlocal - CTL)
# multi year mean for CTL and SCEN (SCEN_local, SCEN_nonlocal, SCEN_total by interpolation)
# This equation will be rearranged and multi-year mean values applied to different variables
# METHOD="absolute_values_ctl" #, "absolute_values_ctl", "absolute_values_scen", "multi-year_mean_signal" "each_timestep_signal"
if [ "${METHOD}" == "each_timestep_signal" ]; then
cdo sub ${CMOR_VAR}_${SIM1}_${MODEL}_150-years.nc ${CMOR_VAR}_${SIM2}_${MODEL}_150-years.nc ${CMOR_VAR}_${SIM1}-${SIM2}_${MODEL}.nc
cp ${CMOR_VAR}_${SIM1}-${SIM2}_${MODEL}.nc ${CMOR_VAR}_${SIM1}-${SIM2}_${MODEL}_signal-separated.nc
NC_FILE=${SCRATCH}/${SCENARIO_COMBNATION}/${CMOR_TABLE}/${CMOR_VAR}/${CMOR_VAR}_${SIM1}-${SIM2}_${MODEL}_signal-separated.nc
echo "Calculate signal separation for variable ${CMOR_VAR} in file ${NC_FILE}"
python /pf/b/b381334/signal_seperation/prepare_local_nonlocal_total_effects.py ${NC_FILE} ${CMOR_VAR} interpolate_local
# python /pf/b/b380948/lamaclima/prepare_local_nonlocal_total_effects.py ${NC_FILE} ${CMOR_VAR} interpolate_total
# absolute_values_ctl: absolute values based on CTL time series
elif [ "${METHOD}" == "absolute_values_ctl" ] || [ "${METHOD}" == "multi-year_mean_signal" ]; then
# (1) multi year mean of CTL and SCEN to calc delta_total = delta_local + delta_nonlocal
# (2) SCEN_total = delta_total + CTL, with delta_total as multi year mean value and CTL as full time series
# (3) SCEN_local = delta_local...
for SUFFIX in {000000..000004}; do
# IF THE SIGNAL SEPARATED FILE DOES NOT ALREADY EXIST, CREATE IT
if [ ! -f ${CMOR_VAR}_${SIM1}-${SIM2}_${MODEL}_${CDO_COMMAND_1}${SUFFIX}_signal-separated.nc ]; then
cdo ${CDO_COMMAND_1} ${CMOR_VAR}_${SIM1}_${MODEL}${SUFFIX}.nc ${CMOR_VAR}_${SIM1}_${MODEL}_${CDO_COMMAND_1}${SUFFIX}.nc
cdo ${CDO_COMMAND_1} ${CMOR_VAR}_${SIM2}_${MODEL}${SUFFIX}.nc ${CMOR_VAR}_${SIM2}_${MODEL}_${CDO_COMMAND_1}${SUFFIX}.nc
cdo sub ${CMOR_VAR}_${SIM1}_${MODEL}_${CDO_COMMAND_1}${SUFFIX}.nc ${CMOR_VAR}_${SIM2}_${MODEL}_${CDO_COMMAND_1}${SUFFIX}.nc ${CMOR_VAR}_${SIM1}-${SIM2}_${MODEL}_${CDO_COMMAND_1}${SUFFIX}.nc
cp ${CMOR_VAR}_${SIM1}-${SIM2}_${MODEL}_${CDO_COMMAND_1}${SUFFIX}.nc ${CMOR_VAR}_${SIM1}-${SIM2}_${MODEL}_${CDO_COMMAND_1}${SUFFIX}_signal-separated.nc
NC_FILE=${SCRATCH}/${SCENARIO_COMBNATION}/${CMOR_TABLE}/${CMOR_VAR}/${CMOR_VAR}_${SIM1}-${SIM2}_${MODEL}_${CDO_COMMAND_1}${SUFFIX}_signal-separated.nc
echo "Calculate signal separation for variable ${CMOR_VAR} in file ${NC_FILE}"
# python /pf/b/b380948/lamaclima/prepare_local_nonlocal_total_effects.py ${NC_FILE} ${CMOR_VAR} interpolate_local
python /pf/b/b381334/signal_seperation/prepare_local_nonlocal_total_effects.py ${NC_FILE} ${CMOR_VAR} interpolate_total
else
# THE SIGNAL SEPARATED FILE DOES ALREADY EXIST AS "multi-year_mean_signal" ALREADY RAN BEFORE
# ONLY DEFINE THE NC_FILE VARIABLE
NC_FILE=${SCRATCH}/${SCENARIO_COMBNATION}/${CMOR_TABLE}/${CMOR_VAR}/${CMOR_VAR}_${SIM1}-${SIM2}_${MODEL}_${CDO_COMMAND_1}${SUFFIX}_signal-separated.nc
fi
if [ "${METHOD}" == "absolute_values_ctl" ]; then
# ABSOLUTE VALUES FOR TOTAL/LOCAL/NONLOCAL EFFECT: time_series(CTL) + multi_year_mean(delta total/local/nonlocal)
cdo ${CDO_COMMAND_2_ADD} -setname,absolute_${CMOR_VAR}_total ${CMOR_VAR}_${SIM2}_${MODEL}${SUFFIX}.nc -selname,${CMOR_VAR}_total ${NC_FILE} ABS_TOTAL_TEMPORAL.nc
cdo ${CDO_COMMAND_2_ADD} -setname,absolute_${CMOR_VAR}_local ${CMOR_VAR}_${SIM2}_${MODEL}${SUFFIX}.nc -selname,${CMOR_VAR}_local ${NC_FILE} ABS_LOCAL_TEMPORAL.nc
cdo ${CDO_COMMAND_2_ADD} -setname,absolute_${CMOR_VAR}_nonlocal ${CMOR_VAR}_${SIM2}_${MODEL}${SUFFIX}.nc -selname,${CMOR_VAR}_nonlocal ${NC_FILE} ABS_NONLOCAL_TEMPORAL.nc
# CREATE ONE FILE WITH ABSOLUTE VALUES FOR ALL EFFECTS BASED ON CTL CLIMATE
cdo merge ABS_TOTAL_TEMPORAL.nc ABS_LOCAL_TEMPORAL.nc ABS_NONLOCAL_TEMPORAL.nc ${CMOR_VAR}_${SIM1}_${MODEL}_signal-separated_absolute_values_${SIM2}-climate_${SUFFIX}.nc
rm ABS_TOTAL_TEMPORAL.nc ABS_LOCAL_TEMPORAL.nc ABS_NONLOCAL_TEMPORAL.nc
# TO CHECK THE EQUATION
# NC_FILE2=${SCRATCH}/${SCENARIO_COMBNATION}/${CMOR_TABLE}/${CMOR_VAR}/${CMOR_VAR}_${SIM1}-${SIM2}_${MODEL}_${CDO_COMMAND}_signal-separated.nc
fi
done
# absolute_values_scen: absolute values based on scen time series
elif [ "${METHOD}" == "absolute_values_scen" ]; then
# absolute values for SCEN_nonlocal and SCEN_total by interpolation of non-LCLM grid points and LCLM grid points, respectively
# absolute value for SCEN_local = SCEN_total - SCEN_nonlocal + CTL with CTL as multi-year mean values and SCEN as full time series
for SUFFIX in {000000..000004}; do
cp ${CMOR_VAR}_${SIM1}_${MODEL}${SUFFIX}.nc ${CMOR_VAR}_${SIM1}_${MODEL}_signal-separated_absolute_values_${SIM1}-climate_false-local_${SUFFIX}.nc
NC_FILE=${SCRATCH}/${SCENARIO_COMBNATION}/${CMOR_TABLE}/${CMOR_VAR}/${CMOR_VAR}_${SIM1}_${MODEL}_signal-separated_absolute_values_${SIM1}-climate_false-local_${SUFFIX}.nc
echo "Calculate signal separation for variable ${CMOR_VAR} in file ${NC_FILE}"
# METHOD "interpolate_total" NEEDED TO CORRECTLY CALCULATE TOTAL CLIMATE W/O USING FALSE LOCAL INFORMATION
# FOR ABSOLUTE VALUES THE EQUATION total = local + nonlocal MUST NOT BE APPLIED!!
python /pf/b/b381334/signal_seperation/prepare_local_nonlocal_total_effects.py ${NC_FILE} ${CMOR_VAR} interpolate_total
# SCEN_local = SCEN_total - SCEN_nonlocal + CTL; with CTL as multi-year mean values and SCEN as full time series
# fh: separated long command into two shorter
# cdo ${CDO_COMMAND_2_ADD} -sub -selname,${CMOR_VAR}_total ${NC_FILE} -selname,${CMOR_VAR}_nonlocal ${NC_FILE} ${CMOR_VAR}_${SIM2}_${MODEL}_${CDO_COMMAND_1}${SUFFIX}.nc ABS_LOCAL_TEMPORAL.nc
#fh not needed cdo sub -selname,${CMOR_VAR}_total ${NC_FILE} -selname,${CMOR_VAR}_nonlocal ${NC_FILE} ABS_TOTAL-NONLOCAL_TEMPORAL.nc
#fh not needed cdo ${CDO_COMMAND_2_ADD} ABS_TOTAL-NONLOCAL_TEMPORAL.nc ${CMOR_VAR}_${SIM2}_${MODEL}_${CDO_COMMAND_1}${SUFFIX}.nc ABS_LOCAL_TEMPORAL.nc
cdo ${CDO_COMMAND_1} ${CMOR_VAR}_${SIM2}_${MODEL}${SUFFIX}.nc ${CMOR_VAR}_${SIM2}_${MODEL}_${CDO_COMMAND_1}${SUFFIX}.nc
cdo ${CDO_COMMAND_2_ADD} -selname,${CMOR_VAR}_local ${NC_FILE} ${CMOR_VAR}_${SIM2}_${MODEL}_${CDO_COMMAND_1}${SUFFIX}.nc ABS_LOCAL_TEMPORAL.nc
# RENAMING
cdo setname,absolute_${CMOR_VAR}_local ABS_LOCAL_TEMPORAL.nc ABS_LOCAL_TEMPORAL_RENAME.nc
rm ABS_LOCAL_TEMPORAL.nc
# MERGING
cdo merge -setname,absolute_${CMOR_VAR}_nonlocal -selname,${CMOR_VAR}_nonlocal ${NC_FILE} -setname,absolute_${CMOR_VAR}_total -selname,${CMOR_VAR}_total ${NC_FILE} ABS_LOCAL_TEMPORAL_RENAME.nc ${CMOR_VAR}_${SIM1}_${MODEL}_signal-separated_absolute_values_${SIM1}-climate_${SUFFIX}.nc
rm ABS_LOCAL_TEMPORAL_RENAME.nc ${NC_FILE}
done
fi
done