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info_detail.php
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info_detail.php
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<!DOCTYPE html>
<html>
<head>
<title>Biomarker information - CBD</title>
<meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
<link rel="icon" type="image/x-icon" href="images/favicon.ico">
<link href="style.css" rel="stylesheet" type="text/css">
<!-- Font Awesome 矢量图标 -->
<link href="https://cdn.bootcdn.net/ajax/libs/font-awesome/6.2.0/css/all.min.css" rel="stylesheet">
<!-- Roboto 字体 -->
<link href="https://fonts.googleapis.com/css2?family=Roboto&display=swap" rel="stylesheet">
<!--String API-->
<script type="text/javascript" src="https://string-db.org/javascript/combined_embedded_network_v2.0.4.js"></script>
<script>
function send_request() {
var protein = document.getElementById("info").rows[21].getElementsByTagName("td")[1].innerHTML.split(' ');
getSTRING('https://version-12-0.string-db.org', {
'species': '9606',
'identifiers': protein,
'network_flavor': 'confidence',
'caller_identity': 'www.eyeseeworld.com'
})
}
function foothelp(e) {
if (e.id == "Use") {
var frameurl = "help/index.html#/Use";
} else if (e.id == "Cite") {
var frameurl = "help/index.html#/Cite";
} else if (e.id == "Updatelog") {
var frameurl = "help/index.html#/Updatelog";
} else if (e.id == "Home") {
var frameurl = "help/index.html#/";
}
// alert(frameurl);
// 在 _self 打开获取不了 newwindow
var newwindow = window.open('About.html');
newwindow.onload = function() {
newwindow.document.getElementsByClassName('f_content')['f_content']['src'] = frameurl;
}
}
</script>
</head>
<body>
<div class="main">
<div class="header">
<div class="header_resize">
<div class="logo">
<div class="innerbox">
<h1><a href="index.html">CBD2: <br>
Colorectal Cancer Biomarker Database</a></h1>
</div>
</div>
<div class="menu_nav">
<div class="innerbox">
<ul class="menu">
<li><a href="index.html"><i class="fa fa-home"></i> Home</a></li>
<li class="active"><a href="Biomarkers.html"><i class="fa fa-list"></i> Biomarkers</a>
<ul class="submenu">
<li><a href="NBiomarkers.php">Non-Biomarkers</a></li>
</ul>
</li>
<li><a href="Submission.php"><i class="fa fa-upload"></i> Submission</a></li>
<li><a href="Download.html"><i class="fa fa-cloud-download"></i> Download</a></li>
<li><a href="Explore.php"><i class="fa fa-flask"></i> Explore</a></li>
<li><a href="About.html"><i class="fa fa-file-text"></i> About</a></li>
</ul>
</div>
</div>
</div>
</div>
<div class="content">
<div class="innerbox">
<?php
//connect to MySQL
$con = mysqli_connect('ip','user','passwd', 'database');
if (!$con) {
die("Fail to connect MySQL: " . mysqli_connect_errno());
}
mysqli_set_charset($con, 'utf8mb4');
$id = $_GET['id'];
$query = 'SELECT
ID, Biomarker, Category, Discription, Region, Race, Number, `Gender_M/F`, Age,
Location, Stage, Source, Experiment, Statictics, Application, Conclusion,
Reference_first_author, Reference_journal, Reference_year, PMID, Addition,
STRING_Name, STRING_ID, Male, Female, Age_Mean, Target, Drugs, Clinical_Use
FROM
biomarker
where ID="' . $id . '"';
$result = mysqli_query($con, $query);
?>
<table id="info" class="tab1">
<caption>
<h2>The detail information of "
<?php
$row = mysqli_fetch_row($result);
if (!$result) {
printf("Error: %s\n", mysqli_error($con));
exit();
};
echo $row[1]
?>"
</h2>
</caption>
<thead>
<tr>
<th width="15%">Items</th>
<th>Detail</th>
</tr>
</thead>
<tbody>
<?php
// loop through the results: ID, Biomarker, Category, Discription, Region, Race, Number, Gender, Age,
// Location, Stage, Source, Experiment, Statictics, Reference, Application, Conclusion, PMID, Addition
echo '<tr><td width="15%">ID</td><td>' . $row[0] . '</td></tr>';
echo '<tr><td>Name</td><td>' . $row[1] . '</td></tr>';
echo '<tr><td>Category</td><td>' . $row[2] . '</td></tr>';
$symbols = explode(", ", $row[1]);
if (!(strpos($row[2], "Protein") === false)) {
// Protein
// print_r($row);
echo '<tr><td>NCBI Protein</td><td>';
echo '<a href="https://www.ncbi.nlm.nih.gov/protein/?term=' . $symbols[0] . '+AND+Homo+sapiens[Organism]" target="_black" style="color:#20558a;font-weight:bold;"><i class="fa fa-external-link" aria-hidden="true"></i> ' . $symbols[0] . ' (Click to NCBI Protein)</a>';
for ($index = 1; $index < count($symbols); $index++) {
echo '<br><a href="https://www.ncbi.nlm.nih.gov/protein/?term=' . $symbols[$index] . '+AND+Homo+sapiens[Organism]" target="_black" style="color:#20558a;font-weight:bold;"><i class="fa fa-external-link" aria-hidden="true"></i> ' . $symbols[$index] . '(Click to NCBI Protein)</a>';
}
echo '</td></tr>';
echo '<tr><td>Discription</td><td>' . $row[3] . '</td></tr>';
echo '<tr><td>Region</td><td>' . $row[4] . '</td></tr>';
echo '<tr><td>Race</td><td>' . $row[5] . '</td></tr>';
echo '<tr><td>Number</td><td>' . $row[6] . '</td></tr>';
echo '<tr><td>Gender (Male/Female)</td><td>' . $row[7] . '</td></tr>';
echo '<tr><td>Age</td><td>' . $row[8] . '</td></tr>';
echo '<tr><td>Location</td><td>' . $row[9] . '</td></tr>';
echo '<tr><td>Stage</td><td>' . $row[10] . '</td></tr>';
echo '<tr><td>Source</td><td>' . $row[11] . '</td></tr>';
echo '<tr><td>Experiment</td><td>' . $row[12] . '</td></tr>';
echo '<tr><td>Statictics</td><td>' . $row[13] . '</td></tr>';
echo '<tr><td>Application</td><td>' . $row[14] . '</td></tr>';
echo '<tr><td>Clinical_Use</td><td>' . $row[28] . '</td></tr>';
echo '<tr><td>Conclusion</td><td>' . $row[15] . '</td></tr>';
echo '<tr><td>Reference</td><td>' . $row[16] . '. ' . $row[17] . '. ' . $row[18] . '</td></tr>';
echo '<tr><td>PMID</td><td><a href="http://www.ncbi.nlm.nih.gov/pubmed/?term=' . $row[19] . '" target="_black" style="color:#20558a;font-weight:bold;"><i class="fa fa-external-link" aria-hidden="true"></i> ' . $row[19] . ' (Click to PubMed)</a></td></tr>';
if (trim($row[21]) == "No Data" or trim($row[21]) == NULL) {
$stext = "None";
} else {
$stext = trim($row[21]);
}
echo "<tr><td>Symbol</td><td>" . $stext . "</td></tr>";
if (trim($row[22]) == "No Data" or trim($row[22]) == NULL) {
$sitext = "None";
} else {
$sitext = trim($row[22]);
}
echo "<tr><td>STRING ID</td><td>" . $sitext . "</td></tr>";
if (trim($row[21]) == "No Data" or trim($row[21]) == NULL) {
$ppi = "None";
} else {
$ppi = "<div><button id='Querybutton' onclick='send_request();' type='button' style='margin: 20px auto;background-color: #60bbff;box-shadow: 0 5px 10px #60bbff;'><div><i class='fa fa-share-alt'></i> Show STRING PPI</div></button></div>";
}
echo "<tr><td>STRING PPI</td><td>" . $ppi . "</td></tr>";
if ($row[26] == 1) {
$kt = "Yes";
} else {
$kt = "No";
}
echo "<tr><td>Known Target</td><td>" . $kt . "</td></tr>";
$dtext = "";
// $drugcolor = "#c42a8f";
if ($row[27] == "No Data") {
$dtext = "None";
} else {
$dburl = "https://go.drugbank.com/drugs/";
$drugs = explode(", ", $row[27]);
foreach ($drugs as $drug) {
$drugurl = $dburl . $drug;
$drugtext = '<a href="' . $drugurl . '" target="_blank" style="color:#c42a8f;font-weight:bold;"><i class="fa fa-external-link" aria-hidden="true"></i> ' . $drug . "</a>";
if ($dtext == "") {
$dtext = $drugtext;
} else {
$dtext = $dtext . ', ' . $drugtext;
}
}
}
echo "<tr><td>Drugs</td><td>" . $dtext . "</td></tr>";
// $atext = "";
if ($row[20] == "") {
$atext = "None";
} else {
$atext = trim($row[20]);
}
echo "<tr><td>Addition</td><td>" . $atext . "</td></tr>";
} elseif (!(strpos($row[2], "Circular RNA") === false) or !(strpos($row[2], "LncRNA") === false) or !(strpos($row[2], "MicroRNA") === false) or !(strpos($row[2], "DNA") === false)) {
// RNA & DNA
echo '<tr><td>Ontology</td><td>';
echo '<a href="https://www.ncbi.nlm.nih.gov/gene/?term=' . $symbols[0] . '+AND+Homo+sapiens[Organism]" target="_black"><i class="fa fa-external-link" aria-hidden="true"></i> ' . $symbols[0] . ' (Click to NCBI Gene)</a>';
for ($index = 1; $index < count($symbols); $index++) {
echo '<br><a href="https://www.ncbi.nlm.nih.gov/gene/?term=' . $symbols[$index] . '+AND+Homo+sapiens[Organism]" target="_black"><i class="fa fa-external-link" aria-hidden="true"></i> ' . $symbols[$index] . ' (Click to NCBI Gene)</a>';
}
echo '</td></tr>';
echo '<tr><td>Discription</td><td>' . $row[3] . '</td></tr>';
echo '<tr><td>Region</td><td>' . $row[4] . '</td></tr>';
echo '<tr><td>Race</td><td>' . $row[5] . '</td></tr>';
echo '<tr><td>Number</td><td>' . $row[6] . '</td></tr>';
echo '<tr><td>Gender (Male/Female)</td><td>' . $row[7] . '</td></tr>';
echo '<tr><td>Age</td><td>' . $row[8] . '</td></tr>';
echo '<tr><td>Location</td><td>' . $row[9] . '</td></tr>';
echo '<tr><td>Stage</td><td>' . $row[10] . '</td></tr>';
echo '<tr><td>Source</td><td>' . $row[11] . '</td></tr>';
echo '<tr><td>Experiment</td><td>' . $row[12] . '</td></tr>';
echo '<tr><td>Statictics</td><td>' . $row[13] . '</td></tr>';
echo '<tr><td>Application</td><td>' . $row[14] . '</td></tr>';
echo '<tr><td>Clinical_Use</td><td>' . $row[28] . '</td></tr>';
echo '<tr><td>Conclusion</td><td>' . $row[15] . '</td></tr>';
echo '<tr><td>Reference</td><td>' . $row[16] . '. ' . $row[17] . '. ' . $row[18] . '</td></tr>';
echo '<tr><td>PMID</td><td><a href="http://www.ncbi.nlm.nih.gov/pubmed/?term=' . $row[19] . '" target="_black"><i class="fa fa-external-link" aria-hidden="true"></i> ' . $row[19] . ' (Click to PubMed)</a></td></tr>';
echo '<tr><td>Addition</td><td>' . $row[20] . '</td></tr>';
} else {
// Other
echo '<tr><td>Discription</td><td>' . $row[3] . '</td></tr>';
echo '<tr><td>Region</td><td>' . $row[4] . '</td></tr>';
echo '<tr><td>Race</td><td>' . $row[5] . '</td></tr>';
echo '<tr><td>Number</td><td>' . $row[6] . '</td></tr>';
echo '<tr><td>Gender (Male/Female)</td><td>' . $row[7] . '</td></tr>';
echo '<tr><td>Age</td><td>' . $row[8] . '</td></tr>';
echo '<tr><td>Location</td><td>' . $row[9] . '</td></tr>';
echo '<tr><td>Stage</td><td>' . $row[10] . '</td></tr>';
echo '<tr><td>Source</td><td>' . $row[11] . '</td></tr>';
echo '<tr><td>Experiment</td><td>' . $row[12] . '</td></tr>';
echo '<tr><td>Statictics</td><td>' . $row[13] . '</td></tr>';
echo '<tr><td>Application</td><td>' . $row[14] . '</td></tr>';
echo '<tr><td>Clinical_Use</td><td>' . $row[28] . '</td></tr>';
echo '<tr><td>Conclusion</td><td>' . $row[15] . '</td></tr>';
echo '<tr><td>Reference</td><td>' . $row[16] . '. ' . $row[17] . '. ' . $row[18] . '</td></tr>';
echo '<tr><td>PMID</td><td><a href="http://www.ncbi.nlm.nih.gov/pubmed/?term=' . $row[19] . '" target="_black"><i class="fa fa-external-link" aria-hidden="true"></i> ' . $row[19] . ' (Click to PubMed)</a></td></tr>';
echo '<tr><td>Addition</td><td>' . $row[20] . '</td></tr>';
}
?>
</tbody>
</table>
<center>
<div id="stringEmbedded"></div>
</center>
</div>
</div>
<div class="footer">
<div class="innerbox">
<div class="footer-left">
<h2 style="color: #d6d6d6;font-family: 'Roboto',sans-serif;font-size: 22px;">© CBD2 2018-2022</h2>
<ul>
<li id="liu-logo">
<a href="https://liu.se/en" target="_blank"><img src="images/liu.png" style="vertical-align:middle;"></a>
</li>
<li id="suda-logo">
<a href="http://www.suda.edu.cn/" target="_blank"><img src="images/suda.png" style="vertical-align:middle;margin-left: -8px;"></a>
</li>
<li id="gdph-logo">
<a href="https://www.gdghospital.org.cn/" target="_blank"><img src="images/gdph.png" style="vertical-align:middle;margin-left: -5px;margin-top: -5px;"></a>
</li>
</ul>
</div>
<div class="footer-right">
<h2 style="color: #d6d6d6;font-family: 'Roboto',sans-serif;font-size: 22px;">Links</h2>
<ul>
<li>
<a href="https://liu.se/en" target="_blank">Linköping University</a>
</li>
<li>
<a href="http://www.suda.edu.cn/" target="_blank">Soochow University</a>
</li>
<li>
<a href="https://www.gdghospital.org.cn/" target="_blank">Guangdong Provincial People's Hospital</a>
</li>
<li>
<i class="fa-brands fa-github"></i> <a href="https://github.com/WhyLIM/CBD" target="_blank">Open Source</a>
</li>
</ul>
</div>
<div class="footer-right">
<h2 style="color: #d6d6d6;font-family: 'Roboto',sans-serif;font-size: 22px;">Help</h2>
<ul>
<li>
<a id="Use" onclick="javascript:foothelp(this); return false;" href="#">How to Use</a>
</li>
<li>
<a id="Cite" onclick="javascript:foothelp(this); return false;" href="#">Reference</a>
</li>
<li>
<a id="Updatelog" onclick="javascript:foothelp(this); return false;" href="#">Updatelog</a>
</li>
<li>
<a id="Home" onclick="javascript:foothelp(this); return false;" href="#">Contact</a>
</li>
</ul>
</div>
<div class="footer-right">
<h2 style="color: #d6d6d6;font-family: 'Roboto',sans-serif;font-size: 22px;">Support</h2>
<ul>
<li>
<a href="https://fontawesome.com/" target="_blank">Icon</a>
</li>
<li>
<a href="https://docsify.js.org/#/" target="_blank">Document</a>
</li>
<li>
<a href="https://string-db.org/cgi/help?sessionId=bshQSgoux29C" target="_blank">APIs</a>
</li>
<li>
<a>Researchers Worldwide</a>
</li>
</ul>
</div>
</div>
</div>
</div>
</body>
</html>