From 30be90bfdb1b0329991d027493a60a9b1c189fd3 Mon Sep 17 00:00:00 2001 From: Scott Cain Date: Wed, 4 Dec 2024 16:44:21 -0800 Subject: [PATCH] adding 295 files --- config.json | 63482 +++++++++--------- embed/b_malayi_PRJNA10729_embed.json | 1915 +- embed/c_angaria_PRJNA51225_embed.json | 828 +- embed/c_becei_PRJEB28243_embed.json | 386 +- embed/c_bovis_PRJEB34497_embed.json | 376 +- embed/c_brenneri_PRJNA20035_embed.json | 1697 +- embed/c_briggsae_PRJNA10731_embed.json | 2315 +- embed/c_elegans_PRJEB28388_embed.json | 950 +- embed/c_elegans_PRJNA13758_embed.json | 37267 +++++----- embed/c_elegans_PRJNA275000_embed.json | 866 +- embed/c_inopinata_PRJDB5687_embed.json | 372 +- embed/c_japonica_PRJNA12591_embed.json | 1845 +- embed/c_latens_PRJNA248912_embed.json | 338 +- embed/c_nigoni_PRJNA384657_embed.json | 694 +- embed/c_panamensis_PRJEB28259_embed.json | 352 +- embed/c_parvicauda_PRJEB12595_embed.json | 382 +- embed/c_quiockensis_PRJEB11354_embed.json | 350 +- embed/c_remanei_PRJNA53967_embed.json | 1667 +- embed/c_remanei_PRJNA577507_embed.json | 350 +- embed/c_sinica_PRJNA194557_embed.json | 768 +- embed/c_sulstoni_PRJEB12601_embed.json | 336 +- embed/c_tribulationis_PRJEB12608_embed.json | 314 +- embed/c_tropicalis_PRJNA53597_embed.json | 776 +- embed/c_uteleia_PRJEB12600_embed.json | 356 +- embed/c_waitukubuli_PRJEB12602_embed.json | 390 +- embed/c_zanzibari_PRJEB12596_embed.json | 374 +- embed/o_tipulae_PRJEB15512_embed.json | 358 +- embed/o_volvulus_PRJEB513_embed.json | 1765 +- embed/p_pacificus_PRJNA12644_embed.json | 1681 +- embed/p_redivivus_PRJNA186477_embed.json | 846 +- embed/s_ratti_PRJEB125_embed.json | 1689 +- embed/t_muris_PRJEB126_embed.json | 1653 +- 32 files changed, 64854 insertions(+), 62884 deletions(-) diff --git a/config.json b/config.json index 2838993..474c2d7 100644 --- a/config.json +++ b/config.json @@ -1,1997 +1,1117 @@ { - 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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

Note that the default minimum for the graph is the mean plus 1.65 times the standard deviation of the data set and the default maximum is the mean plus 5 times the standard deviation or the data set maximum value, whichever is less." + ] }, { - "name" : "Transcription Factors ChIP-Seq Mixed embryo, SDQ2966_MIS12_N2_MXEMB", - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], - "displays" : [ - { - "displayId" : "Transcription Factors ChIP-Seq Mixed embryo_ SDQ2966_MIS12_N2_MXEMB_Transcription Factors_Transcription and Chromatin-LinearWiggleDisplay", - "maxScore" : 14.7796103194124, - "minScore" : 6.57237140540609, - "type" : "LinearWiggleDisplay" - } - ], - "category" : [ - "modENCODE data (2014)", - "Transcription Factors", - "Transcription and Chromatin" - ], "description" : " seq-SDQ2370_LIN53_N2_LTemb. Synchronized C. elegans late embryos from strain N2 were treated with the cross-linking reagent formaldehyde. Sonicated chromatin was prepared and immunoprecipitated with an affinity-purified polyclonal antibody that recognizes lin-53. The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. Our 126 strategically selected targets include RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.

For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

Note that the default minimum for the graph is the mean plus 1.65 times the standard deviation of the data set and the default maximum is the mean plus 5 times the standard deviation or the data set maximum value, whichever is less." + "name" : "Transcription Factors ChIP-Seq Mixed embryo, OD0039_SMC4_N2_MXEMB" }, { - "trackId" : "c_elegans_PRJNA13758__Transcription Factors_Transcription and Chromatin_Transcription Factors ChIP-Seq Mixed embryo_ SDQ4109_TAF1_N2_MXEMB", + "description" : " seq-SDQ2370_LIN53_N2_LTemb. Synchronized C. elegans late embryos from strain N2 were treated with the cross-linking reagent formaldehyde. Sonicated chromatin was prepared and immunoprecipitated with an affinity-purified polyclonal antibody that recognizes lin-53. The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. Our 126 strategically selected targets include RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.

For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

Note that the default minimum for the graph is the mean plus 1.65 times the standard deviation of the data set and the default maximum is the mean plus 5 times the standard deviation or the data set maximum value, whichever is less.", + "name" : "Histone Modifications in H3Ser10", + "type" : "QuantitativeTrack", + "adapter" : { + "bigWigLocation" : { + "uri" : "https://s3.amazonaws.com/wormbase-modencode/wiggle_binaries/lieb/modencode_5244.bw", + "locationType" : "UriLocation" + }, + "type" : "BigWigAdapter" + }, + "displays" : [ + { + "displayId" : "Histone Modifications in H3Ser10_Chromatin Structure_Histone Modifications and Variants-LinearWiggleDisplay", + "maxScore" : 233.977591630043, + "type" : "LinearWiggleDisplay", + "minScore" : 103.469905237914 + } + ], + "trackId" : "c_elegans_PRJNA13758__Chromatin Structure_Histone Modifications and Variants_Histone Modifications in H3Ser10", "assemblyNames" : [ "c_elegans_PRJNA13758" ], - "name" : "Histone Modifications in H3K36 (ChIP-Seq), H3K36me3_N2_Eemb", "category" : [ "modENCODE data (2014)", "Chromatin Structure", "Histone Modifications and Variants" - ], + ] + }, + { "displays" : [ { - "maxScore" : 162.807931171075, - "displayId" : "Histone Modifications in H3K36 (ChIP-Seq)_ H3K36me3_N2_Eemb_Chromatin Structure_Histone Modifications and Variants-LinearWiggleDisplay", - "minScore" : 67.9105172864549, - "type" : "LinearWiggleDisplay" + "displayId" : "Histone Modifications in H3K27 (ChIP-Seq)_ H3K27me3_AD_Chromatin Structure_Histone Modifications and Variants-LinearWiggleDisplay", + "type" : "LinearWiggleDisplay", + "maxScore" : 37.4757915173666, + "minScore" : 16.326711200731 } ], - "description" : "Histone Modifications in H3K36 (ChIP-seq). Synchronized C. elegans early embryos from strain N2 and synchronized C.elegans adult females from strain DH245.

For more information, see modENCODE's track detail page

Note that the default minimum for the graph is the mean plus 1.65 times the standard deviation of the data set and the default maximum is the mean plus 5 times the standard deviation or the data set maximum value, whichever is less.", + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], + "category" : [ + "modENCODE data (2014)", + "Chromatin Structure", + "Histone Modifications and Variants" + ], + "trackId" : "c_elegans_PRJNA13758__Chromatin Structure_Histone Modifications and Variants_Histone Modifications in H3K27 (ChIP-Seq)_ H3K27me3_AD", + "description" : "Histone Modifications in H3K27 (ChIP-seq). Synchronized C. elegans adult females from strain DH245 and synchronized C.elegans eraly embryos form strain N2.

For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

Note that the default minimum for the graph is the mean plus 1.65 times the standard deviation of the data set and the default maximum is the mean plus 5 times the standard deviation or the data set maximum value, whichever is less.", + "name" : "Histone Modifications in H3K27 (ChIP-Seq), H3K27me1_Eemb", "type" : "QuantitativeTrack", "adapter" : { "type" : "BigWigAdapter", "bigWigLocation" : { "locationType" : "UriLocation", - "uri" : "https://s3.amazonaws.com/agrjbrowse/MOD-jbrowses/WormBase/static_tracks/modencode-bucket/wiggle_binaries/lieb/modencode_6256.bw" + "uri" : "https://s3.amazonaws.com/wormbase-modencode/wiggle_binaries/lieb/modencode_5160.bw" } }, - "trackId" : "c_elegans_PRJNA13758__Chromatin Structure_Histone Modifications and Variants_Histone Modifications in H3K36 (ChIP-Seq)_ H3K36me3_AD_F" + "description" : "Histone Modifications in H3K27 (ChIP-seq). Synchronized C. elegans adult females from strain DH245 and synchronized C.elegans eraly embryos form strain N2.

For more information, see modENCODE's track detail page

Note that the default minimum for the graph is the mean plus 1.65 times the standard deviation of the data set and the default maximum is the mean plus 5 times the standard deviation or the data set maximum value, whichever is less." }, { "displays" : [ { + "displayId" : "Histone Modifications in H3K27 (ChIP-Seq)_ H3K27me3_N2_Eemb_Chromatin Structure_Histone Modifications and Variants-LinearWiggleDisplay", "type" : "LinearWiggleDisplay", - "maxScore" : 134.760423737605, - "minScore" : 64.0885398334098, - "displayId" : "Histone Modifications in H3K23 (ChIP-Seq)_Chromatin Structure_Histone Modifications and Variants-LinearWiggleDisplay" + "maxScore" : 222.757303101851, + "minScore" : 90.3068100236108 } ], + "trackId" : "c_elegans_PRJNA13758__Chromatin Structure_Histone Modifications and Variants_Histone Modifications in H3K27 (ChIP-Seq)_ H3K27me3_N2_Eemb", "category" : [ "modENCODE data (2014)", "Chromatin Structure", @@ -21543,77 +21100,109 @@ "assemblyNames" : [ "c_elegans_PRJNA13758" ], - "name" : "Histone Modifications in H3K23 (ChIP-Seq)", - "trackId" : "c_elegans_PRJNA13758__Chromatin Structure_Histone Modifications and Variants_Histone Modifications in H3K23 (ChIP-Seq)", - "type" : "QuantitativeTrack", + "description" : " Histone Modifications in H3K27 (ChIP-seq). Synchronized C. elegans adult females from strain DH245 and synchronized C.elegans eraly embryos form strain N2.

For more information, see modENCODE's track detail page

Note that the default minimum for the graph is the mean plus 1.65 times the standard deviation of the data set and the default maximum is the mean plus 5 times the standard deviation or the data set maximum value, whichever is less.", + "name" : "Histone Modifications in H3K27 (ChIP-Seq), H3K27me3_N2_Eemb", "adapter" : { "bigWigLocation" : { - "uri" : "https://s3.amazonaws.com/agrjbrowse/MOD-jbrowses/WormBase/static_tracks/modencode-bucket/wiggle_binaries/lieb/modencode_5151.bw", + "uri" : "https://s3.amazonaws.com/wormbase-modencode/wiggle_binaries/lieb/modencode_5163.bw", "locationType" : "UriLocation" }, "type" : "BigWigAdapter" }, - "description" : "Histone Modifications in H3K23 (ChIP-seq). Synchronized C. elegans early embryos from strain N2.

For more information, see modENCODE's track detail page

Note that the default minimum for the graph is the mean plus 1.65 times the standard deviation of the data set and the default maximum is the mean plus 5 times the standard deviation or the data set maximum value, whichever is less." + "type" : "QuantitativeTrack" }, { - "description" : "Synchronized C. elegans adult females from strain DH245 were treated with the cross-linking reagent formaldehyde. Sonicated chromatin was prepared and immunoprecipitated with an affinity-purified polyclonal antibody that recognizes histone H3 phosphorylated on serine 10. The recovered DNA fragments (as well as a sample of input DNA) were sequenced on the Illumina GA-II platform. The signal graph data track shows the coverage of short reads in each sample. The alignment files were used to call binding peaks with the MACS algorithm to generate the track showing sequence features.

For more information, see modENCODE's track detail page

Note that the default minimum for the graph is the mean plus 1.65 times the standard deviation of the data set and the default maximum is the mean plus 5 times the standard deviation or the data set maximum value, whichever is less.", - "trackId" : "c_elegans_PRJNA13758__Chromatin Structure_Histone Modifications and Variants_Histone Modifications in H3Ser10", + "displays" : [ + { + "displayId" : "Histone Modifications in H3K27 (ChIP-Seq)_ H3K27ac_Eemb_Chromatin Structure_Histone Modifications and Variants-LinearWiggleDisplay", + "type" : "LinearWiggleDisplay", + "maxScore" : 306.51999835487, + "minScore" : 120.976899457107 + } + ], + "trackId" : "c_elegans_PRJNA13758__Chromatin Structure_Histone Modifications and Variants_Histone Modifications in H3K27 (ChIP-Seq)_ H3K27ac_Eemb", + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], + "category" : [ + "modENCODE data (2014)", + "Chromatin Structure", + "Histone Modifications and Variants" + ], + "description" : " Histone Modifications in H3K27 (ChIP-seq). Synchronized C. elegans adult females from strain DH245 and synchronized C.elegans eraly embryos form strain N2.

For more information, see modENCODE's track detail page

Note that the default minimum for the graph is the mean plus 1.65 times the standard deviation of the data set and the default maximum is the mean plus 5 times the standard deviation or the data set maximum value, whichever is less.", + "name" : "Histone Modifications in H3K27 (ChIP-Seq), H3K27ac_Eemb", "adapter" : { "type" : "BigWigAdapter", "bigWigLocation" : { - "locationType" : "UriLocation", - "uri" : "https://s3.amazonaws.com/agrjbrowse/MOD-jbrowses/WormBase/static_tracks/modencode-bucket/wiggle_binaries/lieb/modencode_5244.bw" + "uri" : "https://s3.amazonaws.com/wormbase-modencode/wiggle_binaries/lieb/modencode_5159.bw", + "locationType" : "UriLocation" } }, + "type" : "QuantitativeTrack" + }, + { + "description" : " Histone Modifications in H3K27 (ChIP-seq). Synchronized C. elegans adult females from strain DH245 and synchronized C.elegans eraly embryos form strain N2.

For more information, see modENCODE's track detail page

Note that the default minimum for the graph is the mean plus 1.65 times the standard deviation of the data set and the default maximum is the mean plus 5 times the standard deviation or the data set maximum value, whichever is less.", + "name" : "Histone Modifications in H3K27 (ChIP-Seq), H3K27ac_AD", "type" : "QuantitativeTrack", - "name" : "Histone Modifications in H3Ser10", - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], + "adapter" : { + "type" : "BigWigAdapter", + "bigWigLocation" : { + "locationType" : "UriLocation", + "uri" : "https://s3.amazonaws.com/wormbase-modencode/wiggle_binaries/lieb/modencode_3921.bw" + } + }, "displays" : [ { + "minScore" : 142.885147709367, + "maxScore" : 327.693780937475, "type" : "LinearWiggleDisplay", - "displayId" : "Histone Modifications in H3Ser10_Chromatin Structure_Histone Modifications and Variants-LinearWiggleDisplay", - "minScore" : 103.469905237914, - "maxScore" : 233.977591630043 + "displayId" : "Histone Modifications in H3K27 (ChIP-Seq)_ H3K27ac_AD_Chromatin Structure_Histone Modifications and Variants-LinearWiggleDisplay" } ], + "trackId" : "c_elegans_PRJNA13758__Chromatin Structure_Histone Modifications and Variants_Histone Modifications in H3K27 (ChIP-Seq)_ H3K27ac_AD", "category" : [ "modENCODE data (2014)", "Chromatin Structure", "Histone Modifications and Variants" + ], + "assemblyNames" : [ + "c_elegans_PRJNA13758" ] }, { - "description" : "Histone Modifications in H3K27 (ChIP-seq). Synchronized C. elegans adult females from strain DH245 and synchronized C.elegans eraly embryos form strain N2.

For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

Note that the default minimum for the graph is the mean plus 1.65 times the standard deviation of the data set and the default maximum is the mean plus 5 times the standard deviation or the data set maximum value, whichever is less." }, { + "trackId" : "c_elegans_PRJNA13758__Chromatin Structure_Histone Modifications and Variants_Histone Modifications in H3K4 (ChIP-Seq)_ H3K4ME2 Eemb", + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], "category" : [ "modENCODE data (2014)", "Chromatin Structure", @@ -21622,45 +21211,34 @@ "displays" : [ { "type" : "LinearWiggleDisplay", - "maxScore" : 172.764670427679, - "displayId" : "Histone Modifications in H3K27 (ChIP-Seq)_ H3K27me1_Eemb_Chromatin Structure_Histone Modifications and Variants-LinearWiggleDisplay", - "minScore" : 72.5496412411341 + "maxScore" : 139.469128711342, + "minScore" : 56.5974124747429, + "displayId" : "Histone Modifications in H3K4 (ChIP-Seq)_ H3K4ME2 Eemb_Chromatin Structure_Histone Modifications and Variants-LinearWiggleDisplay" } ], - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], - "name" : "Histone Modifications in H3K27 (ChIP-Seq), H3K27me1_Eemb", - "type" : "QuantitativeTrack", + "name" : "Histone Modifications in H3K4 (ChIP-Seq), H3K4ME2 Eemb", "adapter" : { - "type" : "BigWigAdapter", "bigWigLocation" : { - "locationType" : "UriLocation", - "uri" : "https://s3.amazonaws.com/agrjbrowse/MOD-jbrowses/WormBase/static_tracks/modencode-bucket/wiggle_binaries/lieb/modencode_5160.bw" - } + "uri" : "https://s3.amazonaws.com/wormbase-modencode/wiggle_binaries/lieb/modencode_5157.bw", + "locationType" : "UriLocation" + }, + "type" : "BigWigAdapter" }, - "trackId" : "c_elegans_PRJNA13758__Chromatin Structure_Histone Modifications and Variants_Histone Modifications in H3K27 (ChIP-Seq)_ H3K27me1_Eemb", - "description" : "Histone Modifications in H3K27 (ChIP-seq). Synchronized C. elegans adult females from strain DH245 and synchronized C.elegans eraly embryos form strain N2.

For more information, see modENCODE's track detail page

Note that the default minimum for the graph is the mean plus 1.65 times the standard deviation of the data set and the default maximum is the mean plus 5 times the standard deviation or the data set maximum value, whichever is less." + "type" : "QuantitativeTrack", + "description" : "Histone Modifications in H3K4 (ChIP-seq). Synchronized C. elegans early embryos from strain N2, synchronized C.elegans adult females from strain DH245, synchronized C.elegans young adults from strain DH424 fem-2(b245ts), and synchronized C.elegans youg adults from strain WH223.

For more information, see modENCODE's track detail page

Note that the default minimum for the graph is the mean plus 1.65 times the standard deviation of the data set and the default maximum is the mean plus 5 times the standard deviation or the data set maximum value, whichever is less." }, { - "trackId" : "c_elegans_PRJNA13758__Chromatin Structure_Histone Modifications and Variants_Histone Modifications in H3K27 (ChIP-Seq)_ H3K27me3_N2_Eemb", - "type" : "QuantitativeTrack", + "name" : "Histone Modifications in H3K4 (ChIP-Seq), H3K4me1_Eemb", "adapter" : { - "type" : "BigWigAdapter", "bigWigLocation" : { "locationType" : "UriLocation", - "uri" : "https://s3.amazonaws.com/agrjbrowse/MOD-jbrowses/WormBase/static_tracks/modencode-bucket/wiggle_binaries/lieb/modencode_5163.bw" - } + "uri" : "https://s3.amazonaws.com/wormbase-modencode/wiggle_binaries/lieb/modencode_5158.bw" + }, + "type" : "BigWigAdapter" }, - "description" : " Histone Modifications in H3K27 (ChIP-seq). Synchronized C. elegans adult females from strain DH245 and synchronized C.elegans eraly embryos form strain N2.

For more information, see modENCODE's track detail page

Note that the default minimum for the graph is the mean plus 1.65 times the standard deviation of the data set and the default maximum is the mean plus 5 times the standard deviation or the data set maximum value, whichever is less.", - "displays" : [ - { - "minScore" : 90.3068100236108, - "maxScore" : 222.757303101851, - "displayId" : "Histone Modifications in H3K27 (ChIP-Seq)_ H3K27me3_N2_Eemb_Chromatin Structure_Histone Modifications and Variants-LinearWiggleDisplay", - "type" : "LinearWiggleDisplay" - } - ], + "type" : "QuantitativeTrack", + "description" : "Histone Modifications in H3K4 (ChIP-seq). Synchronized C. elegans early embryos from strain N2, synchronized C.elegans adult females from strain DH245, synchronized C.elegans young adults from strain DH424 fem-2(b245ts), and synchronized C.elegans youg adults from strain WH223.

For more information, see modENCODE's track detail page

Note that the default minimum for the graph is the mean plus 1.65 times the standard deviation of the data set and the default maximum is the mean plus 5 times the standard deviation or the data set maximum value, whichever is less.", + "trackId" : "c_elegans_PRJNA13758__Chromatin Structure_Histone Modifications and Variants_Histone Modifications in H3K4 (ChIP-Seq)_ H3K4me1_Eemb", "category" : [ "modENCODE data (2014)", "Chromatin Structure", @@ -21669,75 +21247,64 @@ "assemblyNames" : [ "c_elegans_PRJNA13758" ], - "name" : "Histone Modifications in H3K27 (ChIP-Seq), H3K27me3_N2_Eemb" + "displays" : [ + { + "displayId" : "Histone Modifications in H3K4 (ChIP-Seq)_ H3K4me1_Eemb_Chromatin Structure_Histone Modifications and Variants-LinearWiggleDisplay", + "minScore" : 62.7467383871617, + "type" : "LinearWiggleDisplay", + "maxScore" : 144.256782991399 + } + ] }, { "displays" : [ { - "maxScore" : 306.51999835487, - "minScore" : 120.976899457107, - "displayId" : "Histone Modifications in H3K27 (ChIP-Seq)_ H3K27ac_Eemb_Chromatin Structure_Histone Modifications and Variants-LinearWiggleDisplay", - "type" : "LinearWiggleDisplay" + "displayId" : "Histone Modifications in H3K4 (ChIP-Seq)_ H3K4me1_YA_F_Chromatin Structure_Histone Modifications and Variants-LinearWiggleDisplay", + "minScore" : 50.6796560194347, + "type" : "LinearWiggleDisplay", + "maxScore" : 100.827442483135 } ], + "trackId" : "c_elegans_PRJNA13758__Chromatin Structure_Histone Modifications and Variants_Histone Modifications in H3K4 (ChIP-Seq)_ H3K4me1_YA_F", "category" : [ "modENCODE data (2014)", "Chromatin Structure", "Histone Modifications and Variants" ], - "name" : "Histone Modifications in H3K27 (ChIP-Seq), H3K27ac_Eemb", "assemblyNames" : [ "c_elegans_PRJNA13758" ], - "trackId" : "c_elegans_PRJNA13758__Chromatin Structure_Histone Modifications and Variants_Histone Modifications in H3K27 (ChIP-Seq)_ H3K27ac_Eemb", + "description" : "Histone Modifications in H3K4 (ChIP-seq). Synchronized C. elegans early embryos from strain N2, synchronized C.elegans adult females from strain DH245, synchronized C.elegans young adults from strain DH424 fem-2(b245ts), and synchronized C.elegans youg adults from strain WH223.

For more information, see modENCODE's track detail page

Note that the default minimum for the graph is the mean plus 1.65 times the standard deviation of the data set and the default maximum is the mean plus 5 times the standard deviation or the data set maximum value, whichever is less.", + "name" : "Histone Modifications in H3K4 (ChIP-Seq), H3K4me1_YA_F", + "type" : "QuantitativeTrack", "adapter" : { "bigWigLocation" : { - "uri" : "https://s3.amazonaws.com/agrjbrowse/MOD-jbrowses/WormBase/static_tracks/modencode-bucket/wiggle_binaries/lieb/modencode_5159.bw", + "uri" : "https://s3.amazonaws.com/wormbase-modencode/wiggle_binaries/lieb/modencode_5245.bw", "locationType" : "UriLocation" }, "type" : "BigWigAdapter" - }, - "type" : "QuantitativeTrack", - "description" : " Histone Modifications in H3K27 (ChIP-seq). Synchronized C. elegans adult females from strain DH245 and synchronized C.elegans eraly embryos form strain N2.

For more information, see modENCODE's track detail page

Note that the default minimum for the graph is the mean plus 1.65 times the standard deviation of the data set and the default maximum is the mean plus 5 times the standard deviation or the data set maximum value, whichever is less." + } }, { - "displays" : [ - { - "type" : "LinearWiggleDisplay", - "displayId" : "Histone Modifications in H3K27 (ChIP-Seq)_ H3K27ac_AD_Chromatin Structure_Histone Modifications and Variants-LinearWiggleDisplay", - "minScore" : 142.885147709367, - "maxScore" : 327.693780937475 - } - ], - "category" : [ - "modENCODE data (2014)", - "Chromatin Structure", - "Histone Modifications and Variants" - ], - "name" : "Histone Modifications in H3K27 (ChIP-Seq), H3K27ac_AD", - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], - "trackId" : "c_elegans_PRJNA13758__Chromatin Structure_Histone Modifications and Variants_Histone Modifications in H3K27 (ChIP-Seq)_ H3K27ac_AD", + "description" : "Histone Modifications in H3K4 (ChIP-seq). Synchronized C. elegans early embryos from strain N2, synchronized C.elegans adult females from strain DH245, synchronized C.elegans young adults from strain DH424 fem-2(b245ts), and synchronized C.elegans youg adults from strain WH223.

For more information, see modENCODE's track detail page

Note that the default minimum for the graph is the mean plus 1.65 times the standard deviation of the data set and the default maximum is the mean plus 5 times the standard deviation or the data set maximum value, whichever is less.", + "name" : "Histone Modifications in H3K4 (ChIP-Seq), H3K4me3_Eemb", "adapter" : { "bigWigLocation" : { - "uri" : "https://s3.amazonaws.com/agrjbrowse/MOD-jbrowses/WormBase/static_tracks/modencode-bucket/wiggle_binaries/lieb/modencode_3921.bw", + "uri" : "https://s3.amazonaws.com/wormbase-modencode/wiggle_binaries/lieb/modencode_5166.bw", "locationType" : "UriLocation" }, "type" : "BigWigAdapter" }, "type" : "QuantitativeTrack", - "description" : " Histone Modifications in H3K27 (ChIP-seq). Synchronized C. elegans adult females from strain DH245 and synchronized C.elegans eraly embryos form strain N2.

For more information, see modENCODE's track detail page

Note that the default minimum for the graph is the mean plus 1.65 times the standard deviation of the data set and the default maximum is the mean plus 5 times the standard deviation or the data set maximum value, whichever is less." - }, - { "displays" : [ { + "minScore" : 59.1048327103382, "type" : "LinearWiggleDisplay", - "maxScore" : 127.014474209536, - "minScore" : 66.811976489147, - "displayId" : "Histone Modifications in H3K4 (ChIP-Seq)_ H3K4me2_YA_Chromatin Structure_Histone Modifications and Variants-LinearWiggleDisplay" + "maxScore" : 152.914644576783, + "displayId" : "Histone Modifications in H3K4 (ChIP-Seq)_ H3K4me3_Eemb_Chromatin Structure_Histone Modifications and Variants-LinearWiggleDisplay" } ], + "trackId" : "c_elegans_PRJNA13758__Chromatin Structure_Histone Modifications and Variants_Histone Modifications in H3K4 (ChIP-Seq)_ H3K4me3_Eemb", "category" : [ "modENCODE data (2014)", "Chromatin Structure", @@ -21745,50 +21312,56 @@ ], "assemblyNames" : [ "c_elegans_PRJNA13758" - ], - "name" : "Histone Modifications in H3K4 (ChIP-Seq), H3K4me2_YA", - "trackId" : "c_elegans_PRJNA13758__Chromatin Structure_Histone Modifications and Variants_Histone Modifications in H3K4 (ChIP-Seq)_ H3K4me2_YA", + ] + }, + { "type" : "QuantitativeTrack", "adapter" : { + "type" : "BigWigAdapter", "bigWigLocation" : { "locationType" : "UriLocation", - "uri" : "https://s3.amazonaws.com/agrjbrowse/MOD-jbrowses/WormBase/static_tracks/modencode-bucket/wiggle_binaries/lieb/modencode_5253.bw" - }, - "type" : "BigWigAdapter" + "uri" : "https://s3.amazonaws.com/wormbase-modencode/wiggle_binaries/lieb/modencode_6246.bw" + } }, - "description" : "Histone Modifications in H3K4 (ChIP-seq). Synchronized C. elegans early embryos from strain N2, synchronized C.elegans adult females from strain DH245, synchronized C.elegans young adults from strain DH424 fem-2(b245ts), and synchronized C.elegans youg adults from strain WH223.

For more information, see modENCODE's track detail page

Note that the default minimum for the graph is the mean plus 1.65 times the standard deviation of the data set and the default maximum is the mean plus 5 times the standard deviation or the data set maximum value, whichever is less." - }, - { - "name" : "Histone Modifications in H3K4 (ChIP-Seq), H3K4ME2 Eemb", + "name" : "Histone Modifications in H3K4 (ChIP-Seq), H3K4me1_AD_F", + "description" : "Histone Modifications in H3K4 (ChIP-seq). Synchronized C. elegans early embryos from strain N2, synchronized C.elegans adult females from strain DH245, synchronized C.elegans young adults from strain DH424 fem-2(b245ts), and synchronized C.elegans youg adults from strain WH223.

For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

Note that the default minimum for the graph is the mean plus 1.65 times the standard deviation of the data set and the default maximum is the mean plus 5 times the standard deviation or the data set maximum value, whichever is less.", - "trackId" : "c_elegans_PRJNA13758__Chromatin Structure_Histone Modifications and Variants_Histone Modifications in H3K4 (ChIP-Seq)_ H3K4ME2 Eemb", + "trackId" : "c_elegans_PRJNA13758__Chromatin Structure_Histone Modifications and Variants_Histone Modifications in H3K4 (ChIP-Seq)_ H3K4me1_AD_F", + "displays" : [ + { + "type" : "LinearWiggleDisplay", + "maxScore" : 182.374246350992, + "minScore" : 85.3487012958274, + "displayId" : "Histone Modifications in H3K4 (ChIP-Seq)_ H3K4me1_AD_F_Chromatin Structure_Histone Modifications and Variants-LinearWiggleDisplay" + } + ] + }, + { + "description" : "Histone Modifications in H3K9 (ChIP-seq). Synchronized C. elegans L3 larvae from strain N2, synchronized C.elegans early embryos from strain N2, and synchronized C.elegans young adults from strain WH223.

For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

Note that the default minimum for the graph is the mean plus 1.65 times the standard deviation of the data set and the default maximum is the mean plus 5 times the standard deviation or the data set maximum value, whichever is less.", + "name" : "Histone Modifications in H3K9 (ChIP-Seq), H3K9me1_Eemb", + "type" : "QuantitativeTrack", "adapter" : { "type" : "BigWigAdapter", "bigWigLocation" : { - "locationType" : "UriLocation", - "uri" : "https://s3.amazonaws.com/agrjbrowse/MOD-jbrowses/WormBase/static_tracks/modencode-bucket/wiggle_binaries/lieb/modencode_5158.bw" + "uri" : "https://s3.amazonaws.com/wormbase-modencode/wiggle_binaries/lieb/modencode_5171.bw", + "locationType" : "UriLocation" } }, - "type" : "QuantitativeTrack", - "trackId" : "c_elegans_PRJNA13758__Chromatin Structure_Histone Modifications and Variants_Histone Modifications in H3K4 (ChIP-Seq)_ H3K4me1_Eemb" + "description" : "Histone Modifications in H3K9 (ChIP-seq). Synchronized C. elegans L3 larvae from strain N2, synchronized C.elegans early embryos from strain N2, and synchronized C.elegans young adults from strain WH223.

For more information, see modENCODE's track detail page

Note that the default minimum for the graph is the mean plus 1.65 times the standard deviation of the data set and the default maximum is the mean plus 5 times the standard deviation or the data set maximum value, whichever is less." }, { - "description" : "Histone Modifications in H3K4 (ChIP-seq). Synchronized C. elegans early embryos from strain N2, synchronized C.elegans adult females from strain DH245, synchronized C.elegans young adults from strain DH424 fem-2(b245ts), and synchronized C.elegans youg adults from strain WH223.

For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

Note that the default minimum for the graph is the mean plus 1.65 times the standard deviation of the data set and the default maximum is the mean plus 5 times the standard deviation or the data set maximum value, whichever is less.", + "description" : "Histone Modifications in H3K9 (ChIP-seq). Synchronized C. elegans L3 larvae from strain N2, synchronized C.elegans early embryos from strain N2, and synchronized C.elegans young adults from strain WH223.

For more information, see modENCODE's track detail page

Note that the default minimum for the graph is the mean plus 1.65 times the standard deviation of the data set and the default maximum is the mean plus 5 times the standard deviation or the data set maximum value, whichever is less.", + "type" : "QuantitativeTrack", "adapter" : { "bigWigLocation" : { - "uri" : "https://s3.amazonaws.com/agrjbrowse/MOD-jbrowses/WormBase/static_tracks/modencode-bucket/wiggle_binaries/lieb/modencode_5166.bw", - "locationType" : "UriLocation" + "locationType" : "UriLocation", + "uri" : "https://s3.amazonaws.com/wormbase-modencode/wiggle_binaries/lieb/modencode_5149.bw" }, "type" : "BigWigAdapter" }, - "type" : "QuantitativeTrack", - "trackId" : "c_elegans_PRJNA13758__Chromatin Structure_Histone Modifications and Variants_Histone Modifications in H3K4 (ChIP-Seq)_ H3K4me3_Eemb", - "name" : "Histone Modifications in H3K4 (ChIP-Seq), H3K4me3_Eemb", - "assemblyNames" : [ - "c_elegans_PRJNA13758" + "name" : "Histone Modifications in H3K9 (ChIP-Seq), H3K9acS10ph_Eemb", + "displays" : [ + { + "displayId" : "Histone Modifications in H3K9 (ChIP-Seq)_ H3K9acS10ph_Eemb_Chromatin Structure_Histone Modifications and Variants-LinearWiggleDisplay", + "minScore" : 45.6116041820306, + "maxScore" : 102.199406612214, + "type" : "LinearWiggleDisplay" + } ], "category" : [ "modENCODE data (2014)", "Chromatin Structure", "Histone Modifications and Variants" ], + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], + "trackId" : "c_elegans_PRJNA13758__Chromatin Structure_Histone Modifications and Variants_Histone Modifications in H3K9 (ChIP-Seq)_ H3K9acS10ph_Eemb" + }, + { "displays" : [ { - "displayId" : "Histone Modifications in H3K4 (ChIP-Seq)_ H3K4me3_Eemb_Chromatin Structure_Histone Modifications and Variants-LinearWiggleDisplay", - "maxScore" : 152.914644576783, - "minScore" : 59.1048327103382, - "type" : "LinearWiggleDisplay" + "minScore" : 123.373825410011, + "type" : "LinearWiggleDisplay", + "maxScore" : 323.447652757611, + "displayId" : "Histone Modifications in H3K9 (ChIP-Seq)_ H3K9me2_N2_EEMB_Chromatin Structure_Histone Modifications and Variants-LinearWiggleDisplay" } - ] - }, - { - "description" : "Histone Modifications in H3K4 (ChIP-seq). Synchronized C. elegans early embryos from strain N2, synchronized C.elegans adult females from strain DH245, synchronized C.elegans young adults from strain DH424 fem-2(b245ts), and synchronized C.elegans youg adults from strain WH223.

For more information, see modENCODE's track detail page

Note that the default minimum for the graph is the mean plus 1.65 times the standard deviation of the data set and the default maximum is the mean plus 5 times the standard deviation or the data set maximum value, whichever is less.", - "trackId" : "c_elegans_PRJNA13758__Chromatin Structure_Histone Modifications and Variants_Histone Modifications in H3K4 (ChIP-Seq)_ H3K4me1_AD_F", + ], + "trackId" : "c_elegans_PRJNA13758__Chromatin Structure_Histone Modifications and Variants_Histone Modifications in H3K9 (ChIP-Seq)_ H3K9me2_N2_EEMB", + "category" : [ + "modENCODE data (2014)", + "Chromatin Structure", + "Histone Modifications and Variants" + ], + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], + "description" : "Histone Modifications in H3K9 (ChIP-seq). Synchronized C. elegans L3 larvae from strain N2, synchronized C.elegans early embryos from strain N2, and synchronized C.elegans young adults from strain WH223.

For more information, see modENCODE's track detail page

Note that the default minimum for the graph is the mean plus 1.65 times the standard deviation of the data set and the default maximum is the mean plus 5 times the standard deviation or the data set maximum value, whichever is less.", + "name" : "Histone Modifications in H3K9 (ChIP-Seq), H3K9me2_N2_EEMB", "type" : "QuantitativeTrack", "adapter" : { "bigWigLocation" : { - "uri" : "https://s3.amazonaws.com/agrjbrowse/MOD-jbrowses/WormBase/static_tracks/modencode-bucket/wiggle_binaries/lieb/modencode_6246.bw", + "uri" : "https://s3.amazonaws.com/wormbase-modencode/wiggle_binaries/lieb/modencode_5161.bw", "locationType" : "UriLocation" }, "type" : "BigWigAdapter" - }, - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], - "name" : "Histone Modifications in H3K4 (ChIP-Seq), H3K4me1_AD_F", + } + }, + { "displays" : [ { + "minScore" : 87.1794578698883, "type" : "LinearWiggleDisplay", - "displayId" : "Histone Modifications in H3K4 (ChIP-Seq)_ H3K4me1_AD_F_Chromatin Structure_Histone Modifications and Variants-LinearWiggleDisplay", - "maxScore" : 182.374246350992, - "minScore" : 85.3487012958274 + "maxScore" : 196.611690514813, + "displayId" : "Histone Modifications in H3K9 (ChIP-Seq)_ H3K9ac L3_Chromatin Structure_Histone Modifications and Variants-LinearWiggleDisplay" } ], + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], "category" : [ "modENCODE data (2014)", "Chromatin Structure", "Histone Modifications and Variants" - ] - }, - { - "trackId" : "c_elegans_PRJNA13758__Chromatin Structure_Histone Modifications and Variants_Histone Modifications in H3K9 (ChIP-Seq)_ H3K9me3_UP07442_Eemb", + ], + "trackId" : "c_elegans_PRJNA13758__Chromatin Structure_Histone Modifications and Variants_Histone Modifications in H3K9 (ChIP-Seq)_ H3K9ac L3", + "description" : "Histone Modifications in H3K9 (ChIP-seq). Synchronized C. elegans L3 larvae from strain N2, synchronized C.elegans early embryos from strain N2, and synchronized C.elegans young adults from strain WH223.

For more information, see modENCODE's track detail page

Note that the default minimum for the graph is the mean plus 1.65 times the standard deviation of the data set and the default maximum is the mean plus 5 times the standard deviation or the data set maximum value, whichever is less.", + "type" : "QuantitativeTrack", "adapter" : { "type" : "BigWigAdapter", "bigWigLocation" : { - "locationType" : "UriLocation", - "uri" : "https://s3.amazonaws.com/agrjbrowse/MOD-jbrowses/WormBase/static_tracks/modencode-bucket/wiggle_binaries/lieb/modencode_5154.bw" + "uri" : "https://s3.amazonaws.com/wormbase-modencode/wiggle_binaries/lieb/modencode_3578.bw", + "locationType" : "UriLocation" } }, - "type" : "QuantitativeTrack", - "description" : "Histone Modifications in H3K9 (ChIP-seq). Synchronized C. elegans L3 larvae from strain N2, synchronized C.elegans early embryos from strain N2, and synchronized C.elegans young adults from strain WH223.

For more information, see modENCODE's track detail page

Note that the default minimum for the graph is the mean plus 1.65 times the standard deviation of the data set and the default maximum is the mean plus 5 times the standard deviation or the data set maximum value, whichever is less.", + "name" : "Histone Modifications in H3K9 (ChIP-Seq), H3K9ac L3" + }, + { "displays" : [ { - "maxScore" : 396.712345184297, - "minScore" : 150.237873910818, - "displayId" : "Histone Modifications in H3K9 (ChIP-Seq)_ H3K9me3_UP07442_Eemb_Chromatin Structure_Histone Modifications and Variants-LinearWiggleDisplay", - "type" : "LinearWiggleDisplay" + "displayId" : "Histone Modifications in H3K9 (ChIP-Seq)_ H3K9me3_Eemb_Chromatin Structure_Histone Modifications and Variants-LinearWiggleDisplay", + "minScore" : 82.3841360374424, + "type" : "LinearWiggleDisplay", + "maxScore" : 212.961321325583 } ], "category" : [ @@ -21927,45 +21531,36 @@ "Chromatin Structure", "Histone Modifications and Variants" ], - "name" : "Histone Modifications in H3K9 (ChIP-Seq), H3K9me3_UP07442_Eemb", "assemblyNames" : [ "c_elegans_PRJNA13758" - ] - }, - { + ], + "trackId" : "c_elegans_PRJNA13758__Chromatin Structure_Histone Modifications and Variants_Histone Modifications in H3K9 (ChIP-Seq)_ H3K9me3_Eemb", + "description" : "Histone Modifications in H3K9 (ChIP-seq). Synchronized C. elegans L3 larvae from strain N2, synchronized C.elegans early embryos from strain N2, and synchronized C.elegans young adults from strain WH223.

For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

Note that the default minimum for the graph is the mean plus 1.65 times the standard deviation of the data set and the default maximum is the mean plus 5 times the standard deviation or the data set maximum value, whichever is less.", - "category" : [ - "modENCODE data (2014)", - "Chromatin Structure", - "Histone Modifications and Variants" - ], - "displays" : [ - { - "type" : "LinearWiggleDisplay", - "maxScore" : 153.906262103414, - "minScore" : 63.8272664941266, - "displayId" : "Histone Modifications in H3K9 (ChIP-Seq)_ H3K9me1_Eemb_Chromatin Structure_Histone Modifications and Variants-LinearWiggleDisplay" - } - ], - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], - "name" : "Histone Modifications in H3K9 (ChIP-Seq), H3K9me1_Eemb" + "name" : "Histone Modifications in H3K9 (ChIP-Seq), H3K9me3_Eemb" }, { + "name" : "Histone Modifications in H3K9 (ChIP-Seq), H3K9me2_YA", + "type" : "QuantitativeTrack", + "adapter" : { + "type" : "BigWigAdapter", + "bigWigLocation" : { + "uri" : "https://s3.amazonaws.com/wormbase-modencode/wiggle_binaries/lieb/modencode_6325.bw", + "locationType" : "UriLocation" + } + }, + "description" : "Histone Modifications in H3K9 (ChIP-seq). Synchronized C. elegans L3 larvae from strain N2, synchronized C.elegans early embryos from strain N2, and synchronized C.elegans young adults from strain WH223.

For more information, see modENCODE's track detail page

Note that the default minimum for the graph is the mean plus 1.65 times the standard deviation of the data set and the default maximum is the mean plus 5 times the standard deviation or the data set maximum value, whichever is less.", + "trackId" : "c_elegans_PRJNA13758__Chromatin Structure_Histone Modifications and Variants_Histone Modifications in H3K9 (ChIP-Seq)_ H3K9me2_YA", "assemblyNames" : [ "c_elegans_PRJNA13758" ], - "name" : "Histone Modifications in H3K9 (ChIP-Seq), H3K9me3_HK00009_Eemb", "category" : [ "modENCODE data (2014)", "Chromatin Structure", @@ -21973,35 +21568,33 @@ ], "displays" : [ { - "maxScore" : 169.233819673682, - "displayId" : "Histone Modifications in H3K9 (ChIP-Seq)_ H3K9me3_HK00009_Eemb_Chromatin Structure_Histone Modifications and Variants-LinearWiggleDisplay", - "minScore" : 63.9876604923151, + "displayId" : "Histone Modifications in H3K9 (ChIP-Seq)_ H3K9me2_YA_Chromatin Structure_Histone Modifications and Variants-LinearWiggleDisplay", + "minScore" : 44.7411618175145, + "maxScore" : 88.496550962165, "type" : "LinearWiggleDisplay" } - ], - "description" : "Histone Modifications in H3K9 (ChIP-seq). Synchronized C. elegans L3 larvae from strain N2, synchronized C.elegans early embryos from strain N2, and synchronized C.elegans young adults from strain WH223.

For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

Note that the default minimum for the graph is the mean plus 1.65 times the standard deviation of the data set and the default maximum is the mean plus 5 times the standard deviation or the data set maximum value, whichever is less.", + "name" : "Histone Modifications in H3K9 (ChIP-Seq), H3K9acS10_L3", "adapter" : { "type" : "BigWigAdapter", "bigWigLocation" : { "locationType" : "UriLocation", - "uri" : "https://s3.amazonaws.com/agrjbrowse/MOD-jbrowses/WormBase/static_tracks/modencode-bucket/wiggle_binaries/lieb/modencode_5149.bw" + "uri" : "https://s3.amazonaws.com/wormbase-modencode/wiggle_binaries/lieb/modencode_5988.bw" } }, "type" : "QuantitativeTrack", - "trackId" : "c_elegans_PRJNA13758__Chromatin Structure_Histone Modifications and Variants_Histone Modifications in H3K9 (ChIP-Seq)_ H3K9acS10ph_Eemb", - "name" : "Histone Modifications in H3K9 (ChIP-Seq), H3K9acS10ph_Eemb", + "displays" : [ + { + "displayId" : "Histone Modifications in H3K9 (ChIP-Seq)_ H3K9acS10_L3_Chromatin Structure_Histone Modifications and Variants-LinearWiggleDisplay", + "minScore" : 77.6285503918399, + "maxScore" : 172.339243611636, + "type" : "LinearWiggleDisplay" + } + ], + "trackId" : "c_elegans_PRJNA13758__Chromatin Structure_Histone Modifications and Variants_Histone Modifications in H3K9 (ChIP-Seq)_ H3K9acS10_L3", "assemblyNames" : [ "c_elegans_PRJNA13758" ], @@ -22009,21 +21602,13 @@ "modENCODE data (2014)", "Chromatin Structure", "Histone Modifications and Variants" - ], - "displays" : [ - { - "maxScore" : 102.199406612214, - "minScore" : 45.6116041820306, - "displayId" : "Histone Modifications in H3K9 (ChIP-Seq)_ H3K9acS10ph_Eemb_Chromatin Structure_Histone Modifications and Variants-LinearWiggleDisplay", - "type" : "LinearWiggleDisplay" - } ] }, { + "trackId" : "c_elegans_PRJNA13758__Chromatin Structure_Histone Modifications and Variants_Histone Modifications in H3K18 (ChIP-Seq)", "assemblyNames" : [ "c_elegans_PRJNA13758" ], - "name" : "Histone Modifications in H3K9 (ChIP-Seq), H3K9me2_N2_EEMB", "category" : [ "modENCODE data (2014)", "Chromatin Structure", @@ -22031,86 +21616,67 @@ ], "displays" : [ { - "displayId" : "Histone Modifications in H3K9 (ChIP-Seq)_ H3K9me2_N2_EEMB_Chromatin Structure_Histone Modifications and Variants-LinearWiggleDisplay", - "minScore" : 123.373825410011, - "maxScore" : 323.447652757611, - "type" : "LinearWiggleDisplay" + "minScore" : 64.3452119335747, + "type" : "LinearWiggleDisplay", + "maxScore" : 144.573066465378, + "displayId" : "Histone Modifications in H3K18 (ChIP-Seq)_Chromatin Structure_Histone Modifications and Variants-LinearWiggleDisplay" } ], - "description" : "Histone Modifications in H3K9 (ChIP-seq). Synchronized C. elegans L3 larvae from strain N2, synchronized C.elegans early embryos from strain N2, and synchronized C.elegans young adults from strain WH223.

For more information, see modENCODE's track detail page

Note that the default minimum for the graph is the mean plus 1.65 times the standard deviation of the data set and the default maximum is the mean plus 5 times the standard deviation or the data set maximum value, whichever is less.", + "name" : "Histone Modifications in H3K18 (ChIP-Seq)", "type" : "QuantitativeTrack", "adapter" : { "bigWigLocation" : { "locationType" : "UriLocation", - "uri" : "https://s3.amazonaws.com/agrjbrowse/MOD-jbrowses/WormBase/static_tracks/modencode-bucket/wiggle_binaries/lieb/modencode_5161.bw" + "uri" : "https://s3.amazonaws.com/wormbase-modencode/wiggle_binaries/lieb/modencode_5152.bw" }, "type" : "BigWigAdapter" }, - "trackId" : "c_elegans_PRJNA13758__Chromatin Structure_Histone Modifications and Variants_Histone Modifications in H3K9 (ChIP-Seq)_ H3K9me2_N2_EEMB" + "description" : "Histone Modifications in H3K18 (ChIP-seq). Synchronized C. elegans early embryos from strain N2.

For more information, see modENCODE's track detail page

Note that the default minimum for the graph is the mean plus 1.65 times the standard deviation of the data set and the default maximum is the mean plus 5 times the standard deviation or the data set maximum value, whichever is less." }, { - "description" : "Histone Modifications in H3K9 (ChIP-seq). Synchronized C. elegans L3 larvae from strain N2, synchronized C.elegans early embryos from strain N2, and synchronized C.elegans young adults from strain WH223.

For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

Note that the default minimum for the graph is the mean plus 1.65 times the standard deviation of the data set and the default maximum is the mean plus 5 times the standard deviation or the data set maximum value, whichever is less." + "description" : "Histone Modifications in H4K8 (ChIP-seq). Synchronized C. elegans L3 larvae from strain N2, synchronized C.elegans early embryos from strain N2, and synchronized C.elegans adult females from strain DH245.

For more information, see modENCODE's track detail page

Note that the default minimum for the graph is the mean plus 1.65 times the standard deviation of the data set and the default maximum is the mean plus 5 times the standard deviation or the data set maximum value, whichever is less." }, { + "name" : "Histone Modifications in H4K8 (ChIP-Seq), Adult", + "type" : "QuantitativeTrack", + "adapter" : { + "type" : "BigWigAdapter", + "bigWigLocation" : { + "locationType" : "UriLocation", + "uri" : "https://s3.amazonaws.com/wormbase-modencode/wiggle_binaries/lieb/modencode_6009.bw" + } + }, + "description" : "Histone Modifications in H4K8 (ChIP-seq). Synchronized C. elegans L3 larvae from strain N2, synchronized C.elegans early embryos from strain N2, and synchronized C.elegans adult females from strain DH245.

For more information, see modENCODE's track detail page

Note that the default minimum for the graph is the mean plus 1.65 times the standard deviation of the data set and the default maximum is the mean plus 5 times the standard deviation or the data set maximum value, whichever is less.", + "trackId" : "c_elegans_PRJNA13758__Chromatin Structure_Histone Modifications and Variants_Histone Modifications in H4K8 (ChIP-Seq)_ Adult", "assemblyNames" : [ "c_elegans_PRJNA13758" ], - "name" : "Histone Modifications in H3K9 (ChIP-Seq), H3K9me2_YA", "category" : [ "modENCODE data (2014)", "Chromatin Structure", @@ -22118,100 +21684,81 @@ ], "displays" : [ { - "maxScore" : 88.496550962165, - "displayId" : "Histone Modifications in H3K9 (ChIP-Seq)_ H3K9me2_YA_Chromatin Structure_Histone Modifications and Variants-LinearWiggleDisplay", - "minScore" : 44.7411618175145, - "type" : "LinearWiggleDisplay" + "displayId" : "Histone Modifications in H4K8 (ChIP-Seq)_ Adult_Chromatin Structure_Histone Modifications and Variants-LinearWiggleDisplay", + "maxScore" : 204.712529, + "type" : "LinearWiggleDisplay", + "minScore" : 92.69767115 } - ], - "description" : "Histone Modifications in H3K9 (ChIP-seq). Synchronized C. elegans L3 larvae from strain N2, synchronized C.elegans early embryos from strain N2, and synchronized C.elegans young adults from strain WH223.

For more information, see modENCODE's track detail page

Note that the default minimum for the graph is the mean plus 1.65 times the standard deviation of the data set and the default maximum is the mean plus 5 times the standard deviation or the data set maximum value, whichever is less.", - "type" : "QuantitativeTrack", + ] + }, + { + "description" : "Histone Modifications in H4K8 (ChIP-seq). Synchronized C. elegans L3 larvae from strain N2, synchronized C.elegans early embryos from strain N2, and synchronized C.elegans adult females from strain DH245.

For more information, see modENCODE's track detail page

Note that the default minimum for the graph is the mean plus 1.65 times the standard deviation of the data set and the default maximum is the mean plus 5 times the standard deviation or the data set maximum value, whichever is less.", + "name" : "Histone Modifications in H4K8 (ChIP-Seq), Embryo", "adapter" : { + "type" : "BigWigAdapter", "bigWigLocation" : { - "uri" : "https://s3.amazonaws.com/agrjbrowse/MOD-jbrowses/WormBase/static_tracks/modencode-bucket/wiggle_binaries/lieb/modencode_6325.bw", + "uri" : "https://s3.amazonaws.com/wormbase-modencode/wiggle_binaries/lieb/modencode_5162.bw", "locationType" : "UriLocation" - }, - "type" : "BigWigAdapter" + } }, - "trackId" : "c_elegans_PRJNA13758__Chromatin Structure_Histone Modifications and Variants_Histone Modifications in H3K9 (ChIP-Seq)_ H3K9me2_YA" - }, - { + "type" : "QuantitativeTrack", "displays" : [ { - "maxScore" : 172.339243611636, - "minScore" : 77.6285503918399, - "displayId" : "Histone Modifications in H3K9 (ChIP-Seq)_ H3K9acS10_L3_Chromatin Structure_Histone Modifications and Variants-LinearWiggleDisplay", - "type" : "LinearWiggleDisplay" + "displayId" : "Histone Modifications in H4K8 (ChIP-Seq)_ Embryo_Chromatin Structure_Histone Modifications and Variants-LinearWiggleDisplay", + "minScore" : 77.58437595, + "type" : "LinearWiggleDisplay", + "maxScore" : 174.871937 } ], - "category" : [ - "modENCODE data (2014)", - "Chromatin Structure", - "Histone Modifications and Variants" - ], - "name" : "Histone Modifications in H3K9 (ChIP-Seq), H3K9acS10_L3", + "trackId" : "c_elegans_PRJNA13758__Chromatin Structure_Histone Modifications and Variants_Histone Modifications in H4K8 (ChIP-Seq)_ Embryo", "assemblyNames" : [ "c_elegans_PRJNA13758" ], - "trackId" : "c_elegans_PRJNA13758__Chromatin Structure_Histone Modifications and Variants_Histone Modifications in H3K9 (ChIP-Seq)_ H3K9acS10_L3", - "adapter" : { - "bigWigLocation" : { - "locationType" : "UriLocation", - "uri" : "https://s3.amazonaws.com/agrjbrowse/MOD-jbrowses/WormBase/static_tracks/modencode-bucket/wiggle_binaries/lieb/modencode_5988.bw" - }, - "type" : "BigWigAdapter" - }, - "type" : "QuantitativeTrack", - "description" : "Histone Modifications in H3K9 (ChIP-seq). Synchronized C. elegans L3 larvae from strain N2, synchronized C.elegans early embryos from strain N2, and synchronized C.elegans young adults from strain WH223.

For more information, see modENCODE's track detail page

Note that the default minimum for the graph is the mean plus 1.65 times the standard deviation of the data set and the default maximum is the mean plus 5 times the standard deviation or the data set maximum value, whichever is less." - }, - { "category" : [ "modENCODE data (2014)", "Chromatin Structure", "Histone Modifications and Variants" - ], + ] + }, + { "displays" : [ { - "minScore" : 64.3452119335747, - "maxScore" : 144.573066465378, - "displayId" : "Histone Modifications in H3K18 (ChIP-Seq)_Chromatin Structure_Histone Modifications and Variants-LinearWiggleDisplay", - "type" : "LinearWiggleDisplay" + "displayId" : "Histone Modifications in H3K79 (ChIP-Seq)_ H3K79me3_Eemb_Chromatin Structure_Histone Modifications and Variants-LinearWiggleDisplay", + "type" : "LinearWiggleDisplay", + "maxScore" : 258.834749192124, + "minScore" : 104.972767233401 } ], + "category" : [ + "modENCODE data (2014)", + "Chromatin Structure", + "Histone Modifications and Variants" + ], "assemblyNames" : [ "c_elegans_PRJNA13758" ], - "name" : "Histone Modifications in H3K18 (ChIP-Seq)", + "trackId" : "c_elegans_PRJNA13758__Chromatin Structure_Histone Modifications and Variants_Histone Modifications in H3K79 (ChIP-Seq)_ H3K79me3_Eemb", + "description" : "Histone Modifications in H3K79 (ChIP-seq). Synchronized C. elegans early embryos from strain N2 and synchronized C.elegans adult females from strain DH245.

For more information, see modENCODE's track detail page

Note that the default minimum for the graph is the mean plus 1.65 times the standard deviation of the data set and the default maximum is the mean plus 5 times the standard deviation or the data set maximum value, whichever is less.", "type" : "QuantitativeTrack", "adapter" : { + "type" : "BigWigAdapter", "bigWigLocation" : { - "uri" : "https://s3.amazonaws.com/agrjbrowse/MOD-jbrowses/WormBase/static_tracks/modencode-bucket/wiggle_binaries/lieb/modencode_5152.bw", - "locationType" : "UriLocation" - }, - "type" : "BigWigAdapter" + "locationType" : "UriLocation", + "uri" : "https://s3.amazonaws.com/wormbase-modencode/wiggle_binaries/lieb/modencode_5170.bw" + } }, - "trackId" : "c_elegans_PRJNA13758__Chromatin Structure_Histone Modifications and Variants_Histone Modifications in H3K18 (ChIP-Seq)", - "description" : "Histone Modifications in H3K18 (ChIP-seq). Synchronized C. elegans early embryos from strain N2.

For more information, see modENCODE's track detail page

Note that the default minimum for the graph is the mean plus 1.65 times the standard deviation of the data set and the default maximum is the mean plus 5 times the standard deviation or the data set maximum value, whichever is less." + "name" : "Histone Modifications in H3K79 (ChIP-Seq), H3K79me3_Eemb" }, { - "trackId" : "c_elegans_PRJNA13758__Chromatin Structure_Histone Modifications and Variants_Histone Modifications in H4K8 (ChIP-Seq)_ L3", - "type" : "QuantitativeTrack", - "adapter" : { - "bigWigLocation" : { - "uri" : "https://s3.amazonaws.com/agrjbrowse/MOD-jbrowses/WormBase/static_tracks/modencode-bucket/wiggle_binaries/lieb/modencode_6002.bw", - "locationType" : "UriLocation" - }, - "type" : "BigWigAdapter" - }, - "description" : "Histone Modifications in H4K8 (ChIP-seq). Synchronized C. elegans L3 larvae from strain N2, synchronized C.elegans early embryos from strain N2, and synchronized C.elegans adult females from strain DH245.

For more information, see modENCODE's track detail page

Note that the default minimum for the graph is the mean plus 1.65 times the standard deviation of the data set and the default maximum is the mean plus 5 times the standard deviation or the data set maximum value, whichever is less.", "displays" : [ { + "minScore" : 70.401799738725, "type" : "LinearWiggleDisplay", - "maxScore" : 261.79341, - "displayId" : "Histone Modifications in H4K8 (ChIP-Seq)_ L3_Chromatin Structure_Histone Modifications and Variants-LinearWiggleDisplay", - "minScore" : 123.2342878 + "maxScore" : 165.159696177954, + "displayId" : "Histone Modifications in H3K79 (ChIP-Seq)_ H3K79me3_AD_Chromatin Structure_Histone Modifications and Variants-LinearWiggleDisplay" } ], + "trackId" : "c_elegans_PRJNA13758__Chromatin Structure_Histone Modifications and Variants_Histone Modifications in H3K79 (ChIP-Seq)_ H3K79me3_AD", "category" : [ "modENCODE data (2014)", "Chromatin Structure", @@ -22220,83 +21767,63 @@ "assemblyNames" : [ "c_elegans_PRJNA13758" ], - "name" : "Histone Modifications in H4K8 (ChIP-Seq), L3" - }, - { - "description" : "Histone Modifications in H4K8 (ChIP-seq). Synchronized C. elegans L3 larvae from strain N2, synchronized C.elegans early embryos from strain N2, and synchronized C.elegans adult females from strain DH245.

For more information, see modENCODE's track detail page

Note that the default minimum for the graph is the mean plus 1.65 times the standard deviation of the data set and the default maximum is the mean plus 5 times the standard deviation or the data set maximum value, whichever is less.", - "name" : "Histone Modifications in H4K8 (ChIP-Seq), Adult", - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], + "description" : "Histone Modifications in H3K79 (ChIP-seq). Synchronized C. elegans early embryos from strain N2 and synchronized C.elegans adult females from strain DH245.

For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

Note that the default minimum for the graph is the mean plus 1.65 times the standard deviation of the data set and the default maximum is the mean plus 5 times the standard deviation or the data set maximum value, whichever is less.", + "name" : "EFL-1 Combined (GFP ChIP), EFL1 L2", "adapter" : { + "type" : "BigWigAdapter", "bigWigLocation" : { - "uri" : "https://s3.amazonaws.com/agrjbrowse/MOD-jbrowses/WormBase/static_tracks/modencode-bucket/wiggle_binaries/snyder/9188.bw", + "uri" : "https://s3.amazonaws.com/wormbase-modencode/wiggle_binaries/snyder/9188.bw", "locationType" : "UriLocation" - }, - "type" : "BigWigAdapter" + } }, - "type" : "QuantitativeTrack", - "description" : " Snyder_NHR-23_GFP_L2. Synchronized L2 larvae from C. elegans strain OP43 (a transgenic strain engineered to express a gene fusion between nhr-23 and GFP) were treated with the cross-linking reagent formaldehyde. We are identifying the DNA binding sites for 300 transcription factors in C. elegans. Each transcription factor gene is tagged with the same GFP fusion protein, permitting validation of the gene's correct spatio-temporal expression pattern in transgenic animals.

For more information, see modENCODE's track detail page

Note that the default minimum for the graph is the mean plus 1.65 times the standard deviation of the data set and the default maximum is the mean plus 5 times the standard deviation or the data set maximum value, whichever is less." + "type" : "QuantitativeTrack" }, { "name" : "EFL-1 Combined (GFP ChIP), EFL1 L1 recalled peaks w peaks", + "adapter" : { + "bigWigLocation" : { + "locationType" : "UriLocation", + "uri" : "https://s3.amazonaws.com/wormbase-modencode/wiggle_binaries/snyder/18980.bw" + }, + "type" : "BigWigAdapter" + }, + "type" : "QuantitativeTrack", + "description" : "Identification of Transcription Factor EGL-27::GFP Binding Regions in L1. We are identifying the DNA binding sites for 300 transcription factors in C. elegans. Each transcription factor gene is tagged with the same GFP fusion protein, permitting validation of the gene's correct spatio-temporal expression pattern in transgenic animals. Chromatin immunoprecipitation on each strain is peformed using an anti-GFP antibody, and any bound DNA is deep-sequenced using Solexa GA2 technology.

For more information, see modENCODE's track detail page

Note that the default minimum for the graph is set to zero and the default maximum is the mean plus 5 times the standard deviation or the data set maximum value, whichever is less.

Additional note from Scott Cain: this track doesn't appear in the original modENCODE GBrowse tracks, but I'm nearly certain this 'recall' track should be here.", + "trackId" : "c_elegans_PRJNA13758__Transcription Factors_GFP ChIP (Peak Recall)_EFL-1 Combined (GFP ChIP)_ EFL1 L1 recalled peaks w peaks", "assemblyNames" : [ "c_elegans_PRJNA13758" ], + "category" : [ + "modENCODE data (2014)", + "Transcription Factors", + "GFP ChIP (Peak Recall)" + ], "displays" : [ { - "maxScore" : 119.359462041189, "minScore" : 0, - "displayId" : "EFL-1 Combined (GFP ChIP)_ EFL1 L1 recalled peaks w peaks_Transcription Factors_GFP ChIP (Peak Recall)-LinearWiggleDisplay", - "type" : "LinearWiggleDisplay" + "maxScore" : 119.359462041189, + "type" : "LinearWiggleDisplay", + "displayId" : "EFL-1 Combined (GFP ChIP)_ EFL1 L1 recalled peaks w peaks_Transcription Factors_GFP ChIP (Peak Recall)-LinearWiggleDisplay" } - ], + ] + }, + { + "type" : "FeatureTrack", + "adapter" : { + "type" : "BigBedAdapter", + "bigBedLocation" : { + "uri" : "https://s3.amazonaws.com/wormbase-modencode/bigbed_binaries/18985_details.gff.bb", + "locationType" : "UriLocation" + } + }, + "name" : "__EFL-1 Combined (GFP ChIP), EFL1 L1 recalled peaks peaks", + "description" : "Peak calls for EFL-1 Combined (GFP ChIP), EFL1 L1 recalled peaks w peaks", "category" : [ "modENCODE data (2014)", "Transcription Factors", "GFP ChIP (Peak Recall)" ], - "description" : "Identification of Transcription Factor EGL-27::GFP Binding Regions in L1. We are identifying the DNA binding sites for 300 transcription factors in C. elegans. Each transcription factor gene is tagged with the same GFP fusion protein, permitting validation of the gene's correct spatio-temporal expression pattern in transgenic animals. Chromatin immunoprecipitation on each strain is peformed using an anti-GFP antibody, and any bound DNA is deep-sequenced using Solexa GA2 technology.

For more information, see modENCODE's track detail page

Note that the default minimum for the graph is set to zero and the default maximum is the mean plus 5 times the standard deviation or the data set maximum value, whichever is less.

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

Note that the default minimum for the graph is set to zero and the default maximum is the mean plus 5 times the standard deviation or the data set maximum value, whichever is less.", + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], "trackId" : "c_elegans_PRJNA13758__Transcription Factors_GFP ChIP_EFL-1 Combined (GFP ChIP)_ N2 EFL1 anti-EFL1 L1 w peaks", + "description" : " Snyder_NHR-23_GFP_L2. Synchronized L2 larvae from C. elegans strain OP43 (a transgenic strain engineered to express a gene fusion between nhr-23 and GFP) were treated with the cross-linking reagent formaldehyde. We are identifying the DNA binding sites for 300 transcription factors in C. elegans. Each transcription factor gene is tagged with the same GFP fusion protein, permitting validation of the gene's correct spatio-temporal expression pattern in transgenic animals.

For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

Note that the default minimum for the graph is the mean plus 1.65 times the standard deviation of the data set and the default maximum is the mean plus 5 times the standard deviation or the data set maximum value, whichever is less." - }, - { - "name" : "LSY-2 Combined (GFP ChIP), LSY-2_L4 w peaks", + "description" : " Identification of Transcription Factor SMA-9::GFP Binding Regions in L2. Details Synchronized L2 larvae from C. elegans strain OP130 (a transgenic strain engineered to express a gene fusion between sma-9 and GFP) were treated with the cross-linking reagent formaldehyde. General Description We are identifying the DNA binding sites for 300 transcription factors in C. elegans. Each transcription factor gene is tagged with the same GFP fusion protein, permitting validation of the gene's correct spatio-temporal expression pattern in transgenic animals.

For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

Note that the default minimum for the graph is set to zero and the default maximum is the mean plus 5 times the standard deviation or the data set maximum value, whichever is less." }, { - "name" : "__ZIP-2 Combined (GFP ChIP) peaks", - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], "displays" : [ { - "type" : "LinearBasicDisplay", "renderer" : { - "showDescriptions" : false, "type" : "SvgFeatureRenderer", + "showLabels" : false, "color1" : "deeppink", - "height" : 6, - "showLabels" : false + "showDescriptions" : false, + "height" : 6 }, + "type" : "LinearBasicDisplay", "displayId" : "ZIP-2 Combined (GFP ChIP) w peaks_Transcription Factors_GFP ChIP_bigbed_peaks" } ], @@ -34712,28 +34148,36 @@ "Transcription Factors", "GFP ChIP" ], - "description" : "Peak calls for ZIP-2 Combined (GFP ChIP) w peaks", + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], "trackId" : "c_elegans_PRJNA13758__Transcription Factors_GFP ChIP_ZIP-2 Combined (GFP ChIP) w peaks_bigbed_peaks", + "description" : "Peak calls for ZIP-2 Combined (GFP ChIP) w peaks", + "type" : "FeatureTrack", "adapter" : { "bigBedLocation" : { "locationType" : "UriLocation", - "uri" : "https://s3.amazonaws.com/agrjbrowse/MOD-jbrowses/WormBase/static_tracks/modencode-bucket/bigbed_binaries/18116_details.gff.bb" + "uri" : "https://s3.amazonaws.com/wormbase-modencode/bigbed_binaries/18116_details.gff.bb" }, "type" : "BigBedAdapter" }, - "type" : "FeatureTrack" + "name" : "__ZIP-2 Combined (GFP ChIP) peaks" }, { - "type" : "QuantitativeTrack", + "name" : "ZK377.2 Combined (GFP ChIP), ZK377.2_GFP_L4 w peaks", "adapter" : { "type" : "BigWigAdapter", "bigWigLocation" : { - "uri" : "https://s3.amazonaws.com/agrjbrowse/MOD-jbrowses/WormBase/static_tracks/modencode-bucket/wiggle_binaries/snyder/13835.bw", + "uri" : "https://s3.amazonaws.com/wormbase-modencode/wiggle_binaries/snyder/13835.bw", "locationType" : "UriLocation" } }, - "trackId" : "c_elegans_PRJNA13758__Transcription Factors_GFP ChIP_ZK377.2 Combined (GFP ChIP)_ ZK377.2_GFP_L4 w peaks", + "type" : "QuantitativeTrack", "description" : " Identification of Transcription Factor ZK377.2::GFP Binding Regions in L1. Synchronized L1 larvae from C. elegans strain OP355 (a transgenic strain engineered to express a gene fusion between ZK377.2 and GFP) were treated with the cross-linking reagent formaldehyde. We are identifying the DNA binding sites for 300 transcription factors in C. elegans. Each transcription factor gene is tagged with the same GFP fusion protein, permitting validation of the gene's correct spatio-temporal expression pattern in transgenic animals.

For more information, see modENCODE's track detail page

Note that the default minimum for the graph is set to zero and the default maximum is the mean plus 5 times the standard deviation or the data set maximum value, whichever is less.", + "trackId" : "c_elegans_PRJNA13758__Transcription Factors_GFP ChIP_ZK377.2 Combined (GFP ChIP)_ ZK377.2_GFP_L4 w peaks", + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], "category" : [ "modENCODE data (2014)", "Transcription Factors", @@ -34741,62 +34185,64 @@ ], "displays" : [ { - "type" : "LinearWiggleDisplay", "displayId" : "ZK377.2 Combined (GFP ChIP)_ ZK377.2_GFP_L4 w peaks_Transcription Factors_GFP ChIP-LinearWiggleDisplay", - "minScore" : 0, - "maxScore" : 109.469782107746 + "type" : "LinearWiggleDisplay", + "maxScore" : 109.469782107746, + "minScore" : 0 } - ], - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], - "name" : "ZK377.2 Combined (GFP ChIP), ZK377.2_GFP_L4 w peaks" + ] }, { + "type" : "FeatureTrack", + "adapter" : { + "type" : "BigBedAdapter", + "bigBedLocation" : { + "locationType" : "UriLocation", + "uri" : "https://s3.amazonaws.com/wormbase-modencode/bigbed_binaries/13845_details.gff.bb" + } + }, "name" : "__ZK377.2 Combined (GFP ChIP), ZK377.2_GFP_L4 peaks", - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], + "description" : "Peak calls for ZK377.2 Combined (GFP ChIP), ZK377.2_GFP_L4 w peaks", "category" : [ "modENCODE data (2014)", "Transcription Factors", "GFP ChIP" ], + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], + "trackId" : "c_elegans_PRJNA13758__Transcription Factors_GFP ChIP_ZK377.2 Combined (GFP ChIP)_ ZK377.2_GFP_L4 w peaks_bigbed_peaks", "displays" : [ { "displayId" : "ZK377.2 Combined (GFP ChIP)_ ZK377.2_GFP_L4 w peaks_Transcription Factors_GFP ChIP_bigbed_peaks", + "type" : "LinearBasicDisplay", "renderer" : { - "color1" : "deeppink", "showDescriptions" : false, - "type" : "SvgFeatureRenderer", "height" : 6, - "showLabels" : false - }, - "type" : "LinearBasicDisplay" + "type" : "SvgFeatureRenderer", + "showLabels" : false, + "color1" : "deeppink" + } } - ], - "description" : "Peak calls for ZK377.2 Combined (GFP ChIP), ZK377.2_GFP_L4 w peaks", + ] + }, + { + "description" : " Identification of Transcription Factor ZK377.2::GFP Binding Regions in L1. Synchronized L1 larvae from C. elegans strain OP355 (a transgenic strain engineered to express a gene fusion between ZK377.2 and GFP) were treated with the cross-linking reagent formaldehyde. We are identifying the DNA binding sites for 300 transcription factors in C. elegans. Each transcription factor gene is tagged with the same GFP fusion protein, permitting validation of the gene's correct spatio-temporal expression pattern in transgenic animals.

For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

Note that the default minimum for the graph is set to zero and the default maximum is the mean plus 5 times the standard deviation or the data set maximum value, whichever is less.", "displays" : [ { + "displayId" : "PHA-4 Combined (GFP ChIP)_ PHA4_emb_GFP w peaks_Transcription Factors_GFP ChIP-LinearWiggleDisplay", + "minScore" : 0, "type" : "LinearWiggleDisplay", - "maxScore" : 67.0260031682595, - "displayId" : "PHA-4 Combined (GFP ChIP)_ PHA4_GFP_YA w peaks_Transcription Factors_GFP ChIP-LinearWiggleDisplay", - "minScore" : 0 + "maxScore" : 106.948224194324 } ], + "trackId" : "c_elegans_PRJNA13758__Transcription Factors_GFP ChIP_PHA-4 Combined (GFP ChIP)_ PHA4_emb_GFP w peaks", "category" : [ "modENCODE data (2014)", "Transcription Factors", @@ -36325,30 +35504,39 @@ "assemblyNames" : [ "c_elegans_PRJNA13758" ], - "name" : "PHA-4 Combined (GFP ChIP), PHA4_GFP_YA w peaks" + "description" : "Identification of Transcription Factor PHA-4::GFP Binding Regions in Embryonic, L1 larvae, L2 larvae, L3 larvae, L4 larvae, and Young Adult C. elegans. Details Synchronized C. elegans from various developmental stages of strain OP37 (a transgenic strain engineered to express a gene fusion between pha-4 and GFP) were treated with the cross-linking reagent formaldehyde. General Description We are identifying the DNA binding sites for 300 transcription factors in C. elegans. Each transcription factor gene is tagged with the same GFP fusion protein, permitting validation of the gene's correct spatio-temporal expression pattern in transgenic animals.

For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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Data for lsl-1 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF427HQJ/ and for more information on this lsl-1 experiment, see https://www.encodeproject.org/experiments/ENCSR969MNX/." }, { - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for elt-2 was generated at the Kevin White, UChicago lab. 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For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF002ILG/ and for more information on this tbx-8 experiment, see https://www.encodeproject.org/experiments/ENCSR549VKC/.", + } + }, + { "displays" : [ { - "displayId" : "tbx-8-ENCFF002ILG-LinearBasicDisplay", + "type" : "LinearBasicDisplay", "renderer" : { "height" : 6, "color1" : "blue", "type" : "SvgFeatureRenderer" }, - "type" : "LinearBasicDisplay" + "displayId" : "tbx-8-ENCFF002ILG-LinearBasicDisplay" } ], "category" : [ @@ -37471,185 +36901,185 @@ "assemblyNames" : [ "c_elegans_PRJNA13758" ], + "trackId" : "c_elegans_PRJNA13758_tbx-8-ENCFF002ILG", + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for tbx-8 was generated at the Kevin White, UChicago lab. 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For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF644ZEN/ and for more information on this ceh-19 experiment, see https://www.encodeproject.org/experiments/ENCSR281LRS/.", - "trackId" : "c_elegans_PRJNA13758_ceh-19-ENCFF644ZEN", - "type" : "FeatureTrack", + "name" : "ceh-19", "adapter" : { + "type" : "BigBedAdapter", "bigBedLocation" : { - "uri" : "https://www.encodeproject.org/files/ENCFF644ZEN/@@download/ENCFF644ZEN.bigBed", - "locationType" : "UriLocation" - }, - "type" : "BigBedAdapter" + "locationType" : "UriLocation", + "uri" : "https://www.encodeproject.org/files/ENCFF644ZEN/@@download/ENCFF644ZEN.bigBed" + } }, - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], - "name" : "ceh-19", + "type" : "FeatureTrack", "displays" : [ { "displayId" : "ceh-19-ENCFF644ZEN-LinearBasicDisplay", "renderer" : { - "color1" : "blue", + "height" : 6, "type" : "SvgFeatureRenderer", - "height" : 6 + "color1" : "blue" }, "type" : "LinearBasicDisplay" } ], + "trackId" : "c_elegans_PRJNA13758_ceh-19-ENCFF644ZEN", "category" : [ "modERN", "late embryonic" + ], + "assemblyNames" : [ + "c_elegans_PRJNA13758" ] }, { + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for pax-3 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF713SRM/ and for more information on this pax-3 experiment, see https://www.encodeproject.org/experiments/ENCSR518WKG/.", + "name" : "pax-3", "type" : "FeatureTrack", "adapter" : { "type" : "BigBedAdapter", "bigBedLocation" : { - "locationType" : "UriLocation", - "uri" : "https://www.encodeproject.org/files/ENCFF713SRM/@@download/ENCFF713SRM.bigBed" + "uri" : "https://www.encodeproject.org/files/ENCFF713SRM/@@download/ENCFF713SRM.bigBed", + "locationType" : "UriLocation" } }, - "trackId" : "c_elegans_PRJNA13758_pax-3-ENCFF713SRM", - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for pax-3 was generated at the Kevin White, UChicago lab. 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Data for ttx-3 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF738TXH/ and for more information on this ttx-3 experiment, see https://www.encodeproject.org/experiments/ENCSR233MSN/.", + "trackId" : "c_elegans_PRJNA13758_ttx-3-ENCFF738TXH", "category" : [ "modERN", "late embryonic" ], + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], "displays" : [ { "displayId" : "ttx-3-ENCFF738TXH-LinearBasicDisplay", "type" : "LinearBasicDisplay", "renderer" : { - "color1" : "blue", + "height" : 6, "type" : "SvgFeatureRenderer", - "height" : 6 + "color1" : "blue" } } - ], - "name" : "ttx-3", - "assemblyNames" : [ - "c_elegans_PRJNA13758" ] }, { - "adapter" : { - "type" : "BigBedAdapter", - "bigBedLocation" : { - "locationType" : "UriLocation", - "uri" : "https://www.encodeproject.org/files/ENCFF224RLI/@@download/ENCFF224RLI.bigBed" - } - }, - "type" : "FeatureTrack", - "trackId" : "c_elegans_PRJNA13758_ahr-1-ENCFF224RLI", - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. 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Data for somi-1 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF552MLZ/ and for more information on this somi-1 experiment, see https://www.encodeproject.org/experiments/ENCSR360VOG/.", "adapter" : { - "type" : "BigBedAdapter", "bigBedLocation" : { "locationType" : "UriLocation", "uri" : "https://www.encodeproject.org/files/ENCFF552MLZ/@@download/ENCFF552MLZ.bigBed" - } + }, + "type" : "BigBedAdapter" }, - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], - "name" : "somi-1", - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for somi-1 was generated at the Kevin White, UChicago lab. 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For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF909GPQ/ and for more information on this hmg-4 experiment, see https://www.encodeproject.org/experiments/ENCSR306UKE/.", - "displays" : [ - { - "renderer" : { - "height" : 6, - "type" : "SvgFeatureRenderer", - "color1" : "blue" - }, - "type" : "LinearBasicDisplay", - "displayId" : "hmg-4-ENCFF909GPQ-LinearBasicDisplay" - } - ], + "trackId" : "c_elegans_PRJNA13758_hmg-4-ENCFF909GPQ", "category" : [ "modERN", "early embryonic" @@ -37657,153 +37087,163 @@ "assemblyNames" : [ "c_elegans_PRJNA13758" ], - "name" : "hmg-4" + "displays" : [ + { + "type" : "LinearBasicDisplay", + "renderer" : { + "color1" : "blue", + "type" : "SvgFeatureRenderer", + "height" : 6 + }, + "displayId" : "hmg-4-ENCFF909GPQ-LinearBasicDisplay" + } + ] }, { - "trackId" : "c_elegans_PRJNA13758_unc-3-ENCFF927WYT", "type" : "FeatureTrack", "adapter" : { - "type" : "BigBedAdapter", "bigBedLocation" : { "uri" : "https://www.encodeproject.org/files/ENCFF927WYT/@@download/ENCFF927WYT.bigBed", "locationType" : "UriLocation" - } + }, + "type" : "BigBedAdapter" }, + "name" : "unc-3", "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for unc-3 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF927WYT/ and for more information on this unc-3 experiment, see https://www.encodeproject.org/experiments/ENCSR246TDY/.", - "displays" : [ - { - "type" : "LinearBasicDisplay", - "renderer" : { - "height" : 6, - "type" : "SvgFeatureRenderer", - "color1" : "blue" - }, - "displayId" : "unc-3-ENCFF927WYT-LinearBasicDisplay" - } + "assemblyNames" : [ + "c_elegans_PRJNA13758" ], "category" : [ "modERN", "late embryonic" ], - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], - "name" : "unc-3" - }, - { + "trackId" : "c_elegans_PRJNA13758_unc-3-ENCFF927WYT", "displays" : [ { - "displayId" : "ceh-13-ENCFF163BSC-LinearBasicDisplay", "type" : "LinearBasicDisplay", "renderer" : { - "type" : "SvgFeatureRenderer", + "height" : 6, "color1" : "blue", - "height" : 6 - } + "type" : "SvgFeatureRenderer" + }, + "displayId" : "unc-3-ENCFF927WYT-LinearBasicDisplay" } - ], - "category" : [ - "modERN", - "early embryonic" - ], - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], + ] + }, + { + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for ceh-13 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF163BSC/ and for more information on this ceh-13 experiment, see https://www.encodeproject.org/experiments/ENCSR389SSP/.", "name" : "ceh-13", - "trackId" : "c_elegans_PRJNA13758_ceh-13-ENCFF163BSC", - "type" : "FeatureTrack", "adapter" : { - "type" : "BigBedAdapter", "bigBedLocation" : { "locationType" : "UriLocation", "uri" : "https://www.encodeproject.org/files/ENCFF163BSC/@@download/ENCFF163BSC.bigBed" - } - }, - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for ceh-13 was generated at the Kevin White, UChicago lab. 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Data for efl-3 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF224KZR/ and for more information on this efl-3 experiment, see https://www.encodeproject.org/experiments/ENCSR209ZYI/." + }, + { + "trackId" : "c_elegans_PRJNA13758_ceh-8-ENCFF960PMB", "category" : [ "modERN", "L1 larva" ], - "name" : "ceh-8", "assemblyNames" : [ "c_elegans_PRJNA13758" ], - "trackId" : "c_elegans_PRJNA13758_ceh-8-ENCFF960PMB", + "displays" : [ + { + "renderer" : { + "color1" : "blue", + "type" : "SvgFeatureRenderer", + "height" : 6 + }, + "type" : "LinearBasicDisplay", + "displayId" : "ceh-8-ENCFF960PMB-LinearBasicDisplay" + } + ], + "name" : "ceh-8", "adapter" : { "bigBedLocation" : { "locationType" : "UriLocation", @@ -37815,57 +37255,58 @@ "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for ceh-8 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF960PMB/ and for more information on this ceh-8 experiment, see https://www.encodeproject.org/experiments/ENCSR953PJS/." }, { - "trackId" : "c_elegans_PRJNA13758_elt-2-ENCFF188GID", "type" : "FeatureTrack", "adapter" : { "type" : "BigBedAdapter", "bigBedLocation" : { - "uri" : "https://www.encodeproject.org/files/ENCFF188GID/@@download/ENCFF188GID.bigBed", - "locationType" : "UriLocation" + "locationType" : "UriLocation", + "uri" : "https://www.encodeproject.org/files/ENCFF188GID/@@download/ENCFF188GID.bigBed" } }, + "name" : "elt-2", "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for elt-2 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF188GID/ and for more information on this elt-2 experiment, see https://www.encodeproject.org/experiments/ENCSR266NAT/.", + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], + "category" : [ + "modERN", + "late embryonic" + ], + "trackId" : "c_elegans_PRJNA13758_elt-2-ENCFF188GID", "displays" : [ { "displayId" : "elt-2-ENCFF188GID-LinearBasicDisplay", - "type" : "LinearBasicDisplay", "renderer" : { - "height" : 6, + "type" : "SvgFeatureRenderer", "color1" : "blue", - "type" : "SvgFeatureRenderer" - } + "height" : 6 + }, + "type" : "LinearBasicDisplay" } - ], - "category" : [ - "modERN", - "late embryonic" - ], - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], - "name" : "elt-2" + ] }, { "displays" : [ { - "displayId" : "tlf-1-ENCFF213LJM-LinearBasicDisplay", "renderer" : { - "height" : 6, + "color1" : "blue", "type" : "SvgFeatureRenderer", - "color1" : "blue" + "height" : 6 }, - "type" : "LinearBasicDisplay" + "type" : "LinearBasicDisplay", + "displayId" : "tlf-1-ENCFF213LJM-LinearBasicDisplay" } ], + "trackId" : "c_elegans_PRJNA13758_tlf-1-ENCFF213LJM", "category" : [ "modERN", "young adult" ], - "name" : "tlf-1", "assemblyNames" : [ "c_elegans_PRJNA13758" ], - "trackId" : "c_elegans_PRJNA13758_tlf-1-ENCFF213LJM", + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for tlf-1 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF213LJM/ and for more information on this tlf-1 experiment, see https://www.encodeproject.org/experiments/ENCSR049FHU/.", + "name" : "tlf-1", "adapter" : { "type" : "BigBedAdapter", "bigBedLocation" : { @@ -37873,21 +37314,16 @@ "locationType" : "UriLocation" } }, - "type" : "FeatureTrack", - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for tlf-1 was generated at the Kevin White, UChicago lab. 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For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF624RSH/ and for more information on this lin-32 experiment, see https://www.encodeproject.org/experiments/ENCSR264HFB/.", + "trackId" : "c_elegans_PRJNA13758_lin-32-ENCFF624RSH", "category" : [ "modERN", "mixed stage (embryonic)" ], + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], "displays" : [ { - "type" : "LinearBasicDisplay", "renderer" : { - "height" : 6, "type" : "SvgFeatureRenderer", - "color1" : "blue" + "color1" : "blue", + "height" : 6 }, + "type" : "LinearBasicDisplay", "displayId" : "lin-32-ENCFF624RSH-LinearBasicDisplay" } + ] + }, + { + "displays" : [ + { + "type" : "LinearBasicDisplay", + "renderer" : { + "height" : 6, + "color1" : "blue", + "type" : "SvgFeatureRenderer" + }, + "displayId" : "elt-2-ENCFF801JKF-LinearBasicDisplay" + } ], - "name" : "lin-32", "assemblyNames" : [ "c_elegans_PRJNA13758" ], + "category" : [ + "modERN", + "L1 larva" + ], + "trackId" : "c_elegans_PRJNA13758_elt-2-ENCFF801JKF", + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. 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Data for dpff-1 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF723NIR/ and for more information on this dpff-1 experiment, see https://www.encodeproject.org/experiments/ENCSR447OYJ/.", + "name" : "dpff-1", "type" : "FeatureTrack", "adapter" : { "type" : "BigBedAdapter", "bigBedLocation" : { "locationType" : "UriLocation", - "uri" : "https://www.encodeproject.org/files/ENCFF628XNQ/@@download/ENCFF628XNQ.bigBed" + "uri" : "https://www.encodeproject.org/files/ENCFF723NIR/@@download/ENCFF723NIR.bigBed" } }, - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], - "name" : "vab-15", - "displays" : [ - { - "displayId" : "vab-15-ENCFF628XNQ-LinearBasicDisplay", - "type" : "LinearBasicDisplay", - "renderer" : { - "color1" : "blue", - "type" : "SvgFeatureRenderer", - "height" : 6 - } - } - ], - "category" : [ - "modERN", - "L1 larva" - ] - }, - { - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], - "name" : "ceh-79", "displays" : [ { - "displayId" : "ceh-79-ENCFF583KQW-LinearBasicDisplay", - "type" : "LinearBasicDisplay", + "displayId" : "dpff-1-ENCFF723NIR-LinearBasicDisplay", "renderer" : { "type" : "SvgFeatureRenderer", "color1" : "blue", "height" : 6 - } + }, + "type" : "LinearBasicDisplay" } ], + "trackId" : "c_elegans_PRJNA13758_dpff-1-ENCFF723NIR", "category" : [ "modERN", "young adult" ], - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. 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For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF629RSP/ and for more information on this hif-1 experiment, see https://www.encodeproject.org/experiments/ENCSR991HIA/.", + "trackId" : "c_elegans_PRJNA13758_hif-1-ENCFF629RSP", "category" : [ "modERN", - "young adult" + "L4 larva" + ], + "assemblyNames" : [ + "c_elegans_PRJNA13758" ], "displays" : [ { - "displayId" : "dpff-1-ENCFF723NIR-LinearBasicDisplay", + "displayId" : "hif-1-ENCFF629RSP-LinearBasicDisplay", "renderer" : { "color1" : "blue", "type" : "SvgFeatureRenderer", @@ -38263,86 +37748,59 @@ }, "type" : "LinearBasicDisplay" } + ] + }, + { + "trackId" : "c_elegans_PRJNA13758_ccch-3-ENCFF837OBP", + "category" : [ + "modERN", + "young adult" ], - "name" : "dpff-1", "assemblyNames" : [ "c_elegans_PRJNA13758" ], - "adapter" : { - "type" : "BigBedAdapter", - "bigBedLocation" : { - "locationType" : "UriLocation", - "uri" : "https://www.encodeproject.org/files/ENCFF723NIR/@@download/ENCFF723NIR.bigBed" - } - }, - "type" : "FeatureTrack", - "trackId" : "c_elegans_PRJNA13758_dpff-1-ENCFF723NIR", - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. 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Data for ccch-3 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF837OBP/ and for more information on this ccch-3 experiment, see https://www.encodeproject.org/experiments/ENCSR514BBN/.", + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for ccch-3 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF837OBP/ and for more information on this ccch-3 experiment, see https://www.encodeproject.org/experiments/ENCSR514BBN/." + }, + { + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], + "category" : [ + "modERN", + "late embryonic" + ], + "trackId" : "c_elegans_PRJNA13758_pha-2-ENCFF897MUW", "displays" : [ { - "displayId" : "ccch-3-ENCFF837OBP-LinearBasicDisplay", "type" : "LinearBasicDisplay", "renderer" : { "height" : 6, "type" : "SvgFeatureRenderer", "color1" : "blue" - } + }, + "displayId" : "pha-2-ENCFF897MUW-LinearBasicDisplay" } ], - "category" : [ - "modERN", - "young adult" - ], - "name" : "ccch-3", - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ] - }, - { - "trackId" : "c_elegans_PRJNA13758_pha-2-ENCFF897MUW", "type" : "FeatureTrack", "adapter" : { "type" : "BigBedAdapter", @@ -38351,184 +37809,168 @@ "uri" : "https://www.encodeproject.org/files/ENCFF897MUW/@@download/ENCFF897MUW.bigBed" } }, - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. 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For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF183LPX/ and for more information on this sox-4 experiment, see https://www.encodeproject.org/experiments/ENCSR204WOO/.", + "type" : "FeatureTrack", + "adapter" : { + "bigBedLocation" : { + "locationType" : "UriLocation", + "uri" : "https://www.encodeproject.org/files/ENCFF183LPX/@@download/ENCFF183LPX.bigBed" + }, + "type" : "BigBedAdapter" + }, + "name" : "sox-4", "displays" : [ { + "type" : "LinearBasicDisplay", "renderer" : { - "type" : "SvgFeatureRenderer", "color1" : "blue", + "type" : "SvgFeatureRenderer", "height" : 6 }, - "type" : "LinearBasicDisplay", - "displayId" : "pha-2-ENCFF897MUW-LinearBasicDisplay" + "displayId" : "sox-4-ENCFF183LPX-LinearBasicDisplay" } ], + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], "category" : [ "modERN", "late embryonic" ], - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], - "name" : "pha-2" + "trackId" : "c_elegans_PRJNA13758_sox-4-ENCFF183LPX" }, { + "category" : [ + "modERN", + "L4 larva" + ], "assemblyNames" : [ "c_elegans_PRJNA13758" ], - "name" : "sox-4", + "trackId" : "c_elegans_PRJNA13758_spr-3-ENCFF791MYR", "displays" : [ { "type" : "LinearBasicDisplay", "renderer" : { - "type" : "SvgFeatureRenderer", "color1" : "blue", + "type" : "SvgFeatureRenderer", "height" : 6 }, - "displayId" : "sox-4-ENCFF183LPX-LinearBasicDisplay" + "displayId" : "spr-3-ENCFF791MYR-LinearBasicDisplay" } ], - "category" : [ - "modERN", - "late embryonic" - ], - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for sox-4 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF183LPX/ and for more information on this sox-4 experiment, see https://www.encodeproject.org/experiments/ENCSR204WOO/.", - "trackId" : "c_elegans_PRJNA13758_sox-4-ENCFF183LPX", "type" : "FeatureTrack", "adapter" : { "bigBedLocation" : { "locationType" : "UriLocation", - "uri" : "https://www.encodeproject.org/files/ENCFF183LPX/@@download/ENCFF183LPX.bigBed" + "uri" : "https://www.encodeproject.org/files/ENCFF791MYR/@@download/ENCFF791MYR.bigBed" }, "type" : "BigBedAdapter" - } - }, - { - "trackId" : "c_elegans_PRJNA13758_spr-3-ENCFF791MYR", - "adapter" : { - "type" : "BigBedAdapter", - "bigBedLocation" : { - "locationType" : "UriLocation", - "uri" : "https://www.encodeproject.org/files/ENCFF791MYR/@@download/ENCFF791MYR.bigBed" - } }, - "type" : "FeatureTrack", - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for spr-3 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF791MYR/ and for more information on this spr-3 experiment, see https://www.encodeproject.org/experiments/ENCSR810BRE/.", - "displays" : [ - { - "type" : "LinearBasicDisplay", - "renderer" : { - "height" : 6, - "type" : "SvgFeatureRenderer", - "color1" : "blue" - }, - "displayId" : "spr-3-ENCFF791MYR-LinearBasicDisplay" - } - ], - "category" : [ - "modERN", - "L4 larva" - ], "name" : "spr-3", - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ] + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for spr-3 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF791MYR/ and for more information on this spr-3 experiment, see https://www.encodeproject.org/experiments/ENCSR810BRE/." }, { - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for hlh-17 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF784HDR/ and for more information on this hlh-17 experiment, see https://www.encodeproject.org/experiments/ENCSR895KXK/.", - "adapter" : { - "bigBedLocation" : { - "locationType" : "UriLocation", - "uri" : "https://www.encodeproject.org/files/ENCFF784HDR/@@download/ENCFF784HDR.bigBed" - }, - "type" : "BigBedAdapter" - }, - "type" : "FeatureTrack", - "trackId" : "c_elegans_PRJNA13758_hlh-17-ENCFF784HDR", - "name" : "hlh-17", - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], "category" : [ "modERN", "L1 larva" ], + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], + "trackId" : "c_elegans_PRJNA13758_hlh-17-ENCFF784HDR", "displays" : [ { "displayId" : "hlh-17-ENCFF784HDR-LinearBasicDisplay", - "type" : "LinearBasicDisplay", "renderer" : { "color1" : "blue", "type" : "SvgFeatureRenderer", "height" : 6 - } + }, + "type" : "LinearBasicDisplay" } - ] - }, - { - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for mxl-3 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF700GAN/ and for more information on this mxl-3 experiment, see https://www.encodeproject.org/experiments/ENCSR416GJW/.", + ], "type" : "FeatureTrack", "adapter" : { "type" : "BigBedAdapter", "bigBedLocation" : { - "uri" : "https://www.encodeproject.org/files/ENCFF700GAN/@@download/ENCFF700GAN.bigBed", - "locationType" : "UriLocation" + "locationType" : "UriLocation", + "uri" : "https://www.encodeproject.org/files/ENCFF784HDR/@@download/ENCFF784HDR.bigBed" } }, - "trackId" : "c_elegans_PRJNA13758_mxl-3-ENCFF700GAN", - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], - "name" : "mxl-3", + "name" : "hlh-17", + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for hlh-17 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF784HDR/ and for more information on this hlh-17 experiment, see https://www.encodeproject.org/experiments/ENCSR895KXK/." + }, + { "category" : [ "modERN", "L4 larva" ], + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], + "trackId" : "c_elegans_PRJNA13758_mxl-3-ENCFF700GAN", "displays" : [ { - "displayId" : "mxl-3-ENCFF700GAN-LinearBasicDisplay", "renderer" : { - "height" : 6, "color1" : "blue", - "type" : "SvgFeatureRenderer" + "type" : "SvgFeatureRenderer", + "height" : 6 }, - "type" : "LinearBasicDisplay" + "type" : "LinearBasicDisplay", + "displayId" : "mxl-3-ENCFF700GAN-LinearBasicDisplay" } - ] - }, - { - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for F13C5.2 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF072XKZ/ and for more information on this F13C5.2 experiment, see https://www.encodeproject.org/experiments/ENCSR387HSD/.", - "trackId" : "c_elegans_PRJNA13758_F13C5.2-ENCFF072XKZ", + ], + "type" : "FeatureTrack", "adapter" : { - "type" : "BigBedAdapter", "bigBedLocation" : { - "uri" : "https://www.encodeproject.org/files/ENCFF072XKZ/@@download/ENCFF072XKZ.bigBed", + "uri" : "https://www.encodeproject.org/files/ENCFF700GAN/@@download/ENCFF700GAN.bigBed", "locationType" : "UriLocation" - } + }, + "type" : "BigBedAdapter" }, - "type" : "FeatureTrack", - "name" : "F13C5.2", - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], + "name" : "mxl-3", + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for mxl-3 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF700GAN/ and for more information on this mxl-3 experiment, see https://www.encodeproject.org/experiments/ENCSR416GJW/." + }, + { "displays" : [ { - "displayId" : "F13C5.2-ENCFF072XKZ-LinearBasicDisplay", + "type" : "LinearBasicDisplay", "renderer" : { "height" : 6, "color1" : "blue", "type" : "SvgFeatureRenderer" }, - "type" : "LinearBasicDisplay" + "displayId" : "F13C5.2-ENCFF072XKZ-LinearBasicDisplay" } ], + "trackId" : "c_elegans_PRJNA13758_F13C5.2-ENCFF072XKZ", + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], "category" : [ "modERN", "early embryonic" - ] + ], + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for F13C5.2 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF072XKZ/ and for more information on this F13C5.2 experiment, see https://www.encodeproject.org/experiments/ENCSR387HSD/.", + "name" : "F13C5.2", + "type" : "FeatureTrack", + "adapter" : { + "bigBedLocation" : { + "locationType" : "UriLocation", + "uri" : "https://www.encodeproject.org/files/ENCFF072XKZ/@@download/ENCFF072XKZ.bigBed" + }, + "type" : "BigBedAdapter" + } }, { "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for athp-1 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF087FOX/ and for more information on this athp-1 experiment, see https://www.encodeproject.org/experiments/ENCSR875XJL/.", + "name" : "athp-1", + "type" : "FeatureTrack", "adapter" : { "type" : "BigBedAdapter", "bigBedLocation" : { @@ -38536,38 +37978,46 @@ "uri" : "https://www.encodeproject.org/files/ENCFF087FOX/@@download/ENCFF087FOX.bigBed" } }, - "type" : "FeatureTrack", - "trackId" : "c_elegans_PRJNA13758_athp-1-ENCFF087FOX", - "name" : "athp-1", - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], - "category" : [ - "modERN", - "young adult" - ], "displays" : [ { - "type" : "LinearBasicDisplay", "renderer" : { "height" : 6, - "color1" : "blue", - "type" : "SvgFeatureRenderer" + "type" : "SvgFeatureRenderer", + "color1" : "blue" }, + "type" : "LinearBasicDisplay", "displayId" : "athp-1-ENCFF087FOX-LinearBasicDisplay" } + ], + "trackId" : "c_elegans_PRJNA13758_athp-1-ENCFF087FOX", + "category" : [ + "modERN", + "young adult" + ], + "assemblyNames" : [ + "c_elegans_PRJNA13758" ] }, { + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for K12H6.12 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF760UFU/ and for more information on this K12H6.12 experiment, see https://www.encodeproject.org/experiments/ENCSR500LPZ/.", + "adapter" : { + "bigBedLocation" : { + "locationType" : "UriLocation", + "uri" : "https://www.encodeproject.org/files/ENCFF760UFU/@@download/ENCFF760UFU.bigBed" + }, + "type" : "BigBedAdapter" + }, + "type" : "FeatureTrack", + "name" : "K12H6.12", "displays" : [ { - "displayId" : "K12H6.12-ENCFF760UFU-LinearBasicDisplay", + "type" : "LinearBasicDisplay", "renderer" : { + "height" : 6, "type" : "SvgFeatureRenderer", - "color1" : "blue", - "height" : 6 + "color1" : "blue" }, - "type" : "LinearBasicDisplay" + "displayId" : "K12H6.12-ENCFF760UFU-LinearBasicDisplay" } ], "category" : [ @@ -38577,20 +38027,9 @@ "assemblyNames" : [ "c_elegans_PRJNA13758" ], - "name" : "K12H6.12", - "trackId" : "c_elegans_PRJNA13758_K12H6.12-ENCFF760UFU", - "type" : "FeatureTrack", - "adapter" : { - "type" : "BigBedAdapter", - "bigBedLocation" : { - "uri" : "https://www.encodeproject.org/files/ENCFF760UFU/@@download/ENCFF760UFU.bigBed", - "locationType" : "UriLocation" - } - }, - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for K12H6.12 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF760UFU/ and for more information on this K12H6.12 experiment, see https://www.encodeproject.org/experiments/ENCSR500LPZ/." + "trackId" : "c_elegans_PRJNA13758_K12H6.12-ENCFF760UFU" }, { - "name" : "sdz-12", "assemblyNames" : [ "c_elegans_PRJNA13758" ], @@ -38598,18 +38037,19 @@ "modERN", "L4 larva" ], + "trackId" : "c_elegans_PRJNA13758_sdz-12-ENCFF887VOL", "displays" : [ { "displayId" : "sdz-12-ENCFF887VOL-LinearBasicDisplay", "renderer" : { - "color1" : "blue", + "height" : 6, "type" : "SvgFeatureRenderer", - "height" : 6 + "color1" : "blue" }, "type" : "LinearBasicDisplay" } ], - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for sdz-12 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF887VOL/ and for more information on this sdz-12 experiment, see https://www.encodeproject.org/experiments/ENCSR122TLF/.", + "type" : "FeatureTrack", "adapter" : { "bigBedLocation" : { "locationType" : "UriLocation", @@ -38617,17 +38057,27 @@ }, "type" : "BigBedAdapter" }, - "type" : "FeatureTrack", - "trackId" : "c_elegans_PRJNA13758_sdz-12-ENCFF887VOL" + "name" : "sdz-12", + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for sdz-12 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF887VOL/ and for more information on this sdz-12 experiment, see https://www.encodeproject.org/experiments/ENCSR122TLF/." }, { + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for Y55F3AM.14 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF668OZF/ and for more information on this Y55F3AM.14 experiment, see https://www.encodeproject.org/experiments/ENCSR872HBZ/.", + "type" : "FeatureTrack", + "adapter" : { + "type" : "BigBedAdapter", + "bigBedLocation" : { + "uri" : "https://www.encodeproject.org/files/ENCFF668OZF/@@download/ENCFF668OZF.bigBed", + "locationType" : "UriLocation" + } + }, + "name" : "Y55F3AM.14", "displays" : [ { "displayId" : "Y55F3AM.14-ENCFF668OZF-LinearBasicDisplay", "type" : "LinearBasicDisplay", "renderer" : { - "type" : "SvgFeatureRenderer", "color1" : "blue", + "type" : "SvgFeatureRenderer", "height" : 6 } } @@ -38639,132 +38089,121 @@ "assemblyNames" : [ "c_elegans_PRJNA13758" ], - "name" : "Y55F3AM.14", - "trackId" : "c_elegans_PRJNA13758_Y55F3AM.14-ENCFF668OZF", - "type" : "FeatureTrack", - "adapter" : { - "type" : "BigBedAdapter", - "bigBedLocation" : { - "locationType" : "UriLocation", - "uri" : "https://www.encodeproject.org/files/ENCFF668OZF/@@download/ENCFF668OZF.bigBed" - } - }, - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for Y55F3AM.14 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF668OZF/ and for more information on this Y55F3AM.14 experiment, see https://www.encodeproject.org/experiments/ENCSR872HBZ/." + "trackId" : "c_elegans_PRJNA13758_Y55F3AM.14-ENCFF668OZF" }, { "assemblyNames" : [ "c_elegans_PRJNA13758" ], - "name" : "hlh-15", "category" : [ "modERN", "late embryonic" ], + "trackId" : "c_elegans_PRJNA13758_hlh-15-ENCFF617WQM", "displays" : [ { "displayId" : "hlh-15-ENCFF617WQM-LinearBasicDisplay", - "type" : "LinearBasicDisplay", "renderer" : { - "height" : 6, "color1" : "blue", - "type" : "SvgFeatureRenderer" - } + "type" : "SvgFeatureRenderer", + "height" : 6 + }, + "type" : "LinearBasicDisplay" } ], - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for hlh-15 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF617WQM/ and for more information on this hlh-15 experiment, see https://www.encodeproject.org/experiments/ENCSR155UEF/.", - "type" : "FeatureTrack", "adapter" : { "bigBedLocation" : { - "uri" : "https://www.encodeproject.org/files/ENCFF617WQM/@@download/ENCFF617WQM.bigBed", - "locationType" : "UriLocation" + "locationType" : "UriLocation", + "uri" : "https://www.encodeproject.org/files/ENCFF617WQM/@@download/ENCFF617WQM.bigBed" }, "type" : "BigBedAdapter" }, - "trackId" : "c_elegans_PRJNA13758_hlh-15-ENCFF617WQM" + "type" : "FeatureTrack", + "name" : "hlh-15", + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for hlh-15 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF617WQM/ and for more information on this hlh-15 experiment, see https://www.encodeproject.org/experiments/ENCSR155UEF/." }, { "assemblyNames" : [ "c_elegans_PRJNA13758" ], - "name" : "ztf-22", + "category" : [ + "modERN", + "young adult" + ], + "trackId" : "c_elegans_PRJNA13758_ztf-22-ENCFF214PKJ", "displays" : [ { + "type" : "LinearBasicDisplay", "renderer" : { - "height" : 6, "color1" : "blue", - "type" : "SvgFeatureRenderer" + "type" : "SvgFeatureRenderer", + "height" : 6 }, - "type" : "LinearBasicDisplay", "displayId" : "ztf-22-ENCFF214PKJ-LinearBasicDisplay" } ], - "category" : [ - "modERN", - "young adult" - ], - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for ztf-22 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF214PKJ/ and for more information on this ztf-22 experiment, see https://www.encodeproject.org/experiments/ENCSR684PHU/.", - "trackId" : "c_elegans_PRJNA13758_ztf-22-ENCFF214PKJ", - "type" : "FeatureTrack", "adapter" : { + "type" : "BigBedAdapter", "bigBedLocation" : { "uri" : "https://www.encodeproject.org/files/ENCFF214PKJ/@@download/ENCFF214PKJ.bigBed", "locationType" : "UriLocation" - }, - "type" : "BigBedAdapter" - } + } + }, + "type" : "FeatureTrack", + "name" : "ztf-22", + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for ztf-22 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF214PKJ/ and for more information on this ztf-22 experiment, see https://www.encodeproject.org/experiments/ENCSR684PHU/." }, { + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], "category" : [ "modERN", "young adult" ], + "trackId" : "c_elegans_PRJNA13758_tbp1-ENCFF239AFZ", "displays" : [ { + "displayId" : "tbp1-ENCFF239AFZ-LinearBasicDisplay", "type" : "LinearBasicDisplay", "renderer" : { + "height" : 6, "type" : "SvgFeatureRenderer", - "color1" : "blue", - "height" : 6 - }, - "displayId" : "tbp1-ENCFF239AFZ-LinearBasicDisplay" + "color1" : "blue" + } } ], - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], - "name" : "tbp1", - "type" : "FeatureTrack", "adapter" : { "type" : "BigBedAdapter", "bigBedLocation" : { - "locationType" : "UriLocation", - "uri" : "https://www.encodeproject.org/files/ENCFF239AFZ/@@download/ENCFF239AFZ.bigBed" + "uri" : "https://www.encodeproject.org/files/ENCFF239AFZ/@@download/ENCFF239AFZ.bigBed", + "locationType" : "UriLocation" } }, - "trackId" : "c_elegans_PRJNA13758_tbp1-ENCFF239AFZ", + "type" : "FeatureTrack", + "name" : "tbp1", "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for tbp1 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF239AFZ/ and for more information on this tbp1 experiment, see https://www.encodeproject.org/experiments/ENCSR260AKX/." }, { + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], + "category" : [ + "modERN", + "late embryonic" + ], + "trackId" : "c_elegans_PRJNA13758_lin-11-ENCFF759MFC", "displays" : [ { "displayId" : "lin-11-ENCFF759MFC-LinearBasicDisplay", "renderer" : { - "height" : 6, + "color1" : "blue", "type" : "SvgFeatureRenderer", - "color1" : "blue" + "height" : 6 }, "type" : "LinearBasicDisplay" } ], - "category" : [ - "modERN", - "late embryonic" - ], - "name" : "lin-11", - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], - "trackId" : "c_elegans_PRJNA13758_lin-11-ENCFF759MFC", "adapter" : { "type" : "BigBedAdapter", "bigBedLocation" : { @@ -38773,299 +38212,290 @@ } }, "type" : "FeatureTrack", + "name" : "lin-11", "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for lin-11 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF759MFC/ and for more information on this lin-11 experiment, see https://www.encodeproject.org/experiments/ENCSR656RPB/." }, { - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for lin-54 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF900QWR/ and for more information on this lin-54 experiment, see https://www.encodeproject.org/experiments/ENCSR117TRB/.", "trackId" : "c_elegans_PRJNA13758_lin-54-ENCFF900QWR", - "adapter" : { - "bigBedLocation" : { - "locationType" : "UriLocation", - "uri" : "https://www.encodeproject.org/files/ENCFF900QWR/@@download/ENCFF900QWR.bigBed" - }, - "type" : "BigBedAdapter" - }, - "type" : "FeatureTrack", - "name" : "lin-54", + "category" : [ + "modERN", + "young adult" + ], "assemblyNames" : [ "c_elegans_PRJNA13758" ], "displays" : [ { - "displayId" : "lin-54-ENCFF900QWR-LinearBasicDisplay", "type" : "LinearBasicDisplay", "renderer" : { - "type" : "SvgFeatureRenderer", + "height" : 6, "color1" : "blue", - "height" : 6 - } + "type" : "SvgFeatureRenderer" + }, + "displayId" : "lin-54-ENCFF900QWR-LinearBasicDisplay" } ], - "category" : [ - "modERN", - "young adult" - ] + "name" : "lin-54", + "adapter" : { + "bigBedLocation" : { + "uri" : "https://www.encodeproject.org/files/ENCFF900QWR/@@download/ENCFF900QWR.bigBed", + "locationType" : "UriLocation" + }, + "type" : "BigBedAdapter" + }, + "type" : "FeatureTrack", + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for lin-54 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF900QWR/ and for more information on this lin-54 experiment, see https://www.encodeproject.org/experiments/ENCSR117TRB/." }, { "name" : "cebp-1", - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], + "adapter" : { + "type" : "BigBedAdapter", + "bigBedLocation" : { + "uri" : "https://www.encodeproject.org/files/ENCFF119DMY/@@download/ENCFF119DMY.bigBed", + "locationType" : "UriLocation" + } + }, + "type" : "FeatureTrack", + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for cebp-1 was generated at the Kevin White, UChicago lab. 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For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF163FKK/ and for more information on this T23F11.4 experiment, see https://www.encodeproject.org/experiments/ENCSR434ALY/.", + "name" : "ceh-63" + }, + { "category" : [ "modERN", "late embryonic" ], - "displays" : [ - { - "type" : "LinearBasicDisplay", - "renderer" : { - "color1" : "blue", - "type" : "SvgFeatureRenderer", - "height" : 6 - }, - "displayId" : "T23F11.4-ENCFF163FKK-LinearBasicDisplay" - } - ], - "name" : "T23F11.4", "assemblyNames" : [ "c_elegans_PRJNA13758" - ] - }, - { - "category" : [ - "modERN", - "mixed stage (embryonic)" ], + "trackId" : "c_elegans_PRJNA13758_T23F11.4-ENCFF163FKK", "displays" : [ { + "displayId" : "T23F11.4-ENCFF163FKK-LinearBasicDisplay", "renderer" : { - "type" : "SvgFeatureRenderer", "color1" : "blue", + "type" : "SvgFeatureRenderer", "height" : 6 }, - "type" : "LinearBasicDisplay", - "displayId" : "flh-1-ENCFF177AWS-LinearBasicDisplay" + "type" : "LinearBasicDisplay" } ], - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], - "name" : "flh-1", - "type" : "FeatureTrack", "adapter" : { "type" : "BigBedAdapter", "bigBedLocation" : { - "uri" : "https://www.encodeproject.org/files/ENCFF177AWS/@@download/ENCFF177AWS.bigBed", + "uri" : "https://www.encodeproject.org/files/ENCFF163FKK/@@download/ENCFF163FKK.bigBed", "locationType" : "UriLocation" } }, - "trackId" : "c_elegans_PRJNA13758_flh-1-ENCFF177AWS", - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. 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For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF973XHS/ and for more information on this ceh-27 experiment, see https://www.encodeproject.org/experiments/ENCSR951SLK/.", - "trackId" : "c_elegans_PRJNA13758_ceh-27-ENCFF973XHS", + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for flh-1 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF177AWS/ and for more information on this flh-1 experiment, see https://www.encodeproject.org/experiments/ENCSR811ZML/.", + "name" : "flh-1", "adapter" : { "type" : "BigBedAdapter", "bigBedLocation" : { - "uri" : "https://www.encodeproject.org/files/ENCFF973XHS/@@download/ENCFF973XHS.bigBed", + "uri" : "https://www.encodeproject.org/files/ENCFF177AWS/@@download/ENCFF177AWS.bigBed", "locationType" : "UriLocation" } }, "type" : "FeatureTrack", - "name" : "ceh-27", - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], "displays" : [ { "type" : "LinearBasicDisplay", "renderer" : { - "type" : "SvgFeatureRenderer", "color1" : "blue", + "type" : "SvgFeatureRenderer", "height" : 6 }, - "displayId" : "ceh-27-ENCFF973XHS-LinearBasicDisplay" + "displayId" : "flh-1-ENCFF177AWS-LinearBasicDisplay" } ], + "trackId" : "c_elegans_PRJNA13758_flh-1-ENCFF177AWS", + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], "category" : [ "modERN", - "young adult" + "mixed stage (embryonic)" ] }, { + "trackId" : "c_elegans_PRJNA13758_ceh-27-ENCFF973XHS", "assemblyNames" : [ "c_elegans_PRJNA13758" ], - "name" : "ztf-3", "category" : [ "modERN", "young adult" ], "displays" : [ { - "displayId" : "ztf-3-ENCFF647UFX-LinearBasicDisplay", + "displayId" : "ceh-27-ENCFF973XHS-LinearBasicDisplay", "type" : "LinearBasicDisplay", "renderer" : { "color1" : "blue", @@ -39291,35 +38700,21 @@ } } ], - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for ztf-3 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF647UFX/ and for more information on this ztf-3 experiment, see https://www.encodeproject.org/experiments/ENCSR565RZD/.", - "type" : "FeatureTrack", + "name" : "ceh-27", "adapter" : { "type" : "BigBedAdapter", "bigBedLocation" : { - "uri" : "https://www.encodeproject.org/files/ENCFF647UFX/@@download/ENCFF647UFX.bigBed", - "locationType" : "UriLocation" + "locationType" : "UriLocation", + "uri" : "https://www.encodeproject.org/files/ENCFF973XHS/@@download/ENCFF973XHS.bigBed" } }, - "trackId" : "c_elegans_PRJNA13758_ztf-3-ENCFF647UFX" + "type" : "FeatureTrack", + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for ceh-27 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF973XHS/ and for more information on this ceh-27 experiment, see https://www.encodeproject.org/experiments/ENCSR951SLK/." }, { - "type" : "FeatureTrack", - "adapter" : { - "type" : "BigBedAdapter", - "bigBedLocation" : { - "locationType" : "UriLocation", - "uri" : "https://www.encodeproject.org/files/ENCFF586TMB/@@download/ENCFF586TMB.bigBed" - } - }, - "trackId" : "c_elegans_PRJNA13758_pat-9-ENCFF586TMB", - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for pat-9 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF586TMB/ and for more information on this pat-9 experiment, see https://www.encodeproject.org/experiments/ENCSR572AWO/.", - "category" : [ - "modERN", - "late embryonic" - ], "displays" : [ { - "displayId" : "pat-9-ENCFF586TMB-LinearBasicDisplay", + "displayId" : "ztf-3-ENCFF647UFX-LinearBasicDisplay", "renderer" : { "height" : 6, "type" : "SvgFeatureRenderer", @@ -39328,33 +38723,59 @@ "type" : "LinearBasicDisplay" } ], + "trackId" : "c_elegans_PRJNA13758_ztf-3-ENCFF647UFX", "assemblyNames" : [ "c_elegans_PRJNA13758" ], - "name" : "pat-9" + "category" : [ + "modERN", + "young adult" + ], + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for ztf-3 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF647UFX/ and for more information on this ztf-3 experiment, see https://www.encodeproject.org/experiments/ENCSR565RZD/.", + "name" : "ztf-3", + "type" : "FeatureTrack", + "adapter" : { + "type" : "BigBedAdapter", + "bigBedLocation" : { + "locationType" : "UriLocation", + "uri" : "https://www.encodeproject.org/files/ENCFF647UFX/@@download/ENCFF647UFX.bigBed" + } + } }, { - "name" : "attf-5", - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for pat-9 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF586TMB/ and for more information on this pat-9 experiment, see https://www.encodeproject.org/experiments/ENCSR572AWO/.", + "type" : "FeatureTrack", + "adapter" : { + "type" : "BigBedAdapter", + "bigBedLocation" : { + "uri" : "https://www.encodeproject.org/files/ENCFF586TMB/@@download/ENCFF586TMB.bigBed", + "locationType" : "UriLocation" + } + }, + "name" : "pat-9", "displays" : [ { - "displayId" : "attf-5-ENCFF649ZBL-LinearBasicDisplay", + "displayId" : "pat-9-ENCFF586TMB-LinearBasicDisplay", "renderer" : { - "height" : 6, + "color1" : "blue", "type" : "SvgFeatureRenderer", - "color1" : "blue" + "height" : 6 }, "type" : "LinearBasicDisplay" } ], + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], "category" : [ "modERN", - "young adult" + "late embryonic" ], - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for attf-5 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF649ZBL/ and for more information on this attf-5 experiment, see https://www.encodeproject.org/experiments/ENCSR677TRQ/.", - "trackId" : "c_elegans_PRJNA13758_attf-5-ENCFF649ZBL", + "trackId" : "c_elegans_PRJNA13758_pat-9-ENCFF586TMB" + }, + { + "name" : "attf-5", + "type" : "FeatureTrack", "adapter" : { "bigBedLocation" : { "locationType" : "UriLocation", @@ -39362,17 +38783,36 @@ }, "type" : "BigBedAdapter" }, - "type" : "FeatureTrack" + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for attf-5 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF649ZBL/ and for more information on this attf-5 experiment, see https://www.encodeproject.org/experiments/ENCSR677TRQ/.", + "trackId" : "c_elegans_PRJNA13758_attf-5-ENCFF649ZBL", + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], + "category" : [ + "modERN", + "young adult" + ], + "displays" : [ + { + "renderer" : { + "height" : 6, + "type" : "SvgFeatureRenderer", + "color1" : "blue" + }, + "type" : "LinearBasicDisplay", + "displayId" : "attf-5-ENCFF649ZBL-LinearBasicDisplay" + } + ] }, { "displays" : [ { - "type" : "LinearBasicDisplay", "renderer" : { - "height" : 6, "color1" : "blue", - "type" : "SvgFeatureRenderer" + "type" : "SvgFeatureRenderer", + "height" : 6 }, + "type" : "LinearBasicDisplay", "displayId" : "sem-2-ENCFF579FLI-LinearBasicDisplay" } ], @@ -39380,11 +38820,12 @@ "modERN", "mixed stage (embryonic)" ], - "name" : "sem-2", "assemblyNames" : [ "c_elegans_PRJNA13758" ], "trackId" : "c_elegans_PRJNA13758_sem-2-ENCFF579FLI", + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for sem-2 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF579FLI/ and for more information on this sem-2 experiment, see https://www.encodeproject.org/experiments/ENCSR641VZA/.", + "type" : "FeatureTrack", "adapter" : { "type" : "BigBedAdapter", "bigBedLocation" : { @@ -39392,8 +38833,7 @@ "locationType" : "UriLocation" } }, - "type" : "FeatureTrack", - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for sem-2 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF579FLI/ and for more information on this sem-2 experiment, see https://www.encodeproject.org/experiments/ENCSR641VZA/." + "name" : "sem-2" }, { "displays" : [ @@ -39407,30 +38847,34 @@ "displayId" : "ztf-16-ENCFF319DZY-LinearBasicDisplay" } ], + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], "category" : [ "modERN", "late embryonic" ], - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], - "name" : "ztf-16", "trackId" : "c_elegans_PRJNA13758_ztf-16-ENCFF319DZY", + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for ztf-16 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF319DZY/ and for more information on this ztf-16 experiment, see https://www.encodeproject.org/experiments/ENCSR647GMY/.", "type" : "FeatureTrack", "adapter" : { "bigBedLocation" : { - "uri" : "https://www.encodeproject.org/files/ENCFF319DZY/@@download/ENCFF319DZY.bigBed", - "locationType" : "UriLocation" + "locationType" : "UriLocation", + "uri" : "https://www.encodeproject.org/files/ENCFF319DZY/@@download/ENCFF319DZY.bigBed" }, "type" : "BigBedAdapter" }, - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for ztf-16 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF319DZY/ and for more information on this ztf-16 experiment, see https://www.encodeproject.org/experiments/ENCSR647GMY/." + "name" : "ztf-16" }, { "category" : [ "modERN", "young adult" ], + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], + "trackId" : "c_elegans_PRJNA13758_F10E7.11-ENCFF124YBY", "displays" : [ { "displayId" : "F10E7.11-ENCFF124YBY-LinearBasicDisplay", @@ -39442,10 +38886,6 @@ } } ], - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], - "name" : "F10E7.11", "type" : "FeatureTrack", "adapter" : { "bigBedLocation" : { @@ -39454,60 +38894,60 @@ }, "type" : "BigBedAdapter" }, - "trackId" : "c_elegans_PRJNA13758_F10E7.11-ENCFF124YBY", + "name" : "F10E7.11", "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for F10E7.11 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF124YBY/ and for more information on this F10E7.11 experiment, see https://www.encodeproject.org/experiments/ENCSR541RUY/." }, { - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], - "name" : "zim-3", "displays" : [ { "displayId" : "zim-3-ENCFF451OFD-LinearBasicDisplay", - "type" : "LinearBasicDisplay", "renderer" : { "type" : "SvgFeatureRenderer", "color1" : "blue", "height" : 6 - } + }, + "type" : "LinearBasicDisplay" } ], + "trackId" : "c_elegans_PRJNA13758_zim-3-ENCFF451OFD", + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], "category" : [ "modERN", "young adult" ], "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for zim-3 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF451OFD/ and for more information on this zim-3 experiment, see https://www.encodeproject.org/experiments/ENCSR406NQK/.", - "trackId" : "c_elegans_PRJNA13758_zim-3-ENCFF451OFD", + "name" : "zim-3", "type" : "FeatureTrack", "adapter" : { "type" : "BigBedAdapter", "bigBedLocation" : { - "locationType" : "UriLocation", - "uri" : "https://www.encodeproject.org/files/ENCFF451OFD/@@download/ENCFF451OFD.bigBed" + "uri" : "https://www.encodeproject.org/files/ENCFF451OFD/@@download/ENCFF451OFD.bigBed", + "locationType" : "UriLocation" } } }, { + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], "category" : [ "modERN", "mixed stage (embryonic)" ], + "trackId" : "c_elegans_PRJNA13758_cnd-1-ENCFF507KJW", "displays" : [ { "type" : "LinearBasicDisplay", "renderer" : { "height" : 6, - "color1" : "blue", - "type" : "SvgFeatureRenderer" + "type" : "SvgFeatureRenderer", + "color1" : "blue" }, "displayId" : "cnd-1-ENCFF507KJW-LinearBasicDisplay" } ], - "name" : "cnd-1", - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], "adapter" : { "type" : "BigBedAdapter", "bigBedLocation" : { @@ -39516,90 +38956,80 @@ } }, "type" : "FeatureTrack", - "trackId" : "c_elegans_PRJNA13758_cnd-1-ENCFF507KJW", + "name" : "cnd-1", "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for cnd-1 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF507KJW/ and for more information on this cnd-1 experiment, see https://www.encodeproject.org/experiments/ENCSR296BKT/." }, { + "trackId" : "c_elegans_PRJNA13758_pqm-1-ENCFF679YEI", "assemblyNames" : [ "c_elegans_PRJNA13758" ], - "name" : "pqm-1", "category" : [ "modERN", "late embryonic" ], "displays" : [ { - "displayId" : "pqm-1-ENCFF679YEI-LinearBasicDisplay", "type" : "LinearBasicDisplay", "renderer" : { "height" : 6, "type" : "SvgFeatureRenderer", "color1" : "blue" - } + }, + "displayId" : "pqm-1-ENCFF679YEI-LinearBasicDisplay" } ], - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for pqm-1 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF679YEI/ and for more information on this pqm-1 experiment, see https://www.encodeproject.org/experiments/ENCSR778ETM/.", - "type" : "FeatureTrack", + "name" : "pqm-1", "adapter" : { - "type" : "BigBedAdapter", "bigBedLocation" : { "uri" : "https://www.encodeproject.org/files/ENCFF679YEI/@@download/ENCFF679YEI.bigBed", "locationType" : "UriLocation" - } + }, + "type" : "BigBedAdapter" }, - "trackId" : "c_elegans_PRJNA13758_pqm-1-ENCFF679YEI" + "type" : "FeatureTrack", + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for pqm-1 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF679YEI/ and for more information on this pqm-1 experiment, see https://www.encodeproject.org/experiments/ENCSR778ETM/." }, { - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], + "adapter" : { + "type" : "BigBedAdapter", + "bigBedLocation" : { + "locationType" : "UriLocation", + "uri" : "https://www.encodeproject.org/files/ENCFF478POU/@@download/ENCFF478POU.bigBed" + } + }, + "type" : "FeatureTrack", "name" : "C38D4.7", + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for C38D4.7 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF478POU/ and for more information on this C38D4.7 experiment, see https://www.encodeproject.org/experiments/ENCSR626LGN/.", "category" : [ "modERN", "late embryonic" ], + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], + "trackId" : "c_elegans_PRJNA13758_C38D4.7-ENCFF478POU", "displays" : [ { "renderer" : { + "height" : 6, "type" : "SvgFeatureRenderer", - "color1" : "blue", - "height" : 6 + "color1" : "blue" }, "type" : "LinearBasicDisplay", "displayId" : "C38D4.7-ENCFF478POU-LinearBasicDisplay" } - ], - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for C38D4.7 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF478POU/ and for more information on this C38D4.7 experiment, see https://www.encodeproject.org/experiments/ENCSR626LGN/.", - "type" : "FeatureTrack", - "adapter" : { - "bigBedLocation" : { - "uri" : "https://www.encodeproject.org/files/ENCFF478POU/@@download/ENCFF478POU.bigBed", - "locationType" : "UriLocation" - }, - "type" : "BigBedAdapter" - }, - "trackId" : "c_elegans_PRJNA13758_C38D4.7-ENCFF478POU" + ] }, { - "trackId" : "c_elegans_PRJNA13758_gei-8-ENCFF574OHJ", - "adapter" : { - "bigBedLocation" : { - "uri" : "https://www.encodeproject.org/files/ENCFF574OHJ/@@download/ENCFF574OHJ.bigBed", - "locationType" : "UriLocation" - }, - "type" : "BigBedAdapter" - }, - "type" : "FeatureTrack", - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for gei-8 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF574OHJ/ and for more information on this gei-8 experiment, see https://www.encodeproject.org/experiments/ENCSR729RHJ/.", "displays" : [ { - "type" : "LinearBasicDisplay", "renderer" : { "height" : 6, "type" : "SvgFeatureRenderer", "color1" : "blue" }, + "type" : "LinearBasicDisplay", "displayId" : "gei-8-ENCFF574OHJ-LinearBasicDisplay" } ], @@ -39607,122 +39037,105 @@ "modERN", "L4 larva" ], - "name" : "gei-8", - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ] - }, - { - "displays" : [ - { - "renderer" : { - "type" : "SvgFeatureRenderer", - "color1" : "blue", - "height" : 6 - }, - "type" : "LinearBasicDisplay", - "displayId" : "ceh-83-ENCFF263UCR-LinearBasicDisplay" - } - ], - "category" : [ - "modERN", - "mixed stage (embryonic)" - ], "assemblyNames" : [ "c_elegans_PRJNA13758" ], - "name" : "ceh-83", - "trackId" : "c_elegans_PRJNA13758_ceh-83-ENCFF263UCR", + "trackId" : "c_elegans_PRJNA13758_gei-8-ENCFF574OHJ", + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for gei-8 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF574OHJ/ and for more information on this gei-8 experiment, see https://www.encodeproject.org/experiments/ENCSR729RHJ/.", "type" : "FeatureTrack", "adapter" : { - "type" : "BigBedAdapter", "bigBedLocation" : { "locationType" : "UriLocation", - "uri" : "https://www.encodeproject.org/files/ENCFF263UCR/@@download/ENCFF263UCR.bigBed" - } + "uri" : "https://www.encodeproject.org/files/ENCFF574OHJ/@@download/ENCFF574OHJ.bigBed" + }, + "type" : "BigBedAdapter" }, - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for ceh-83 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF263UCR/ and for more information on this ceh-83 experiment, see https://www.encodeproject.org/experiments/ENCSR579XVH/." + "name" : "gei-8" }, { - "trackId" : "c_elegans_PRJNA13758_nhr-27-ENCFF325DWU", + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for ceh-83 was generated at the Kevin White, UChicago lab. 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For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF320ZRR/ and for more information on this ref-2 experiment, see https://www.encodeproject.org/experiments/ENCSR320EEP/.", - "displays" : [ - { - "renderer" : { - "height" : 6, - "type" : "SvgFeatureRenderer", - "color1" : "blue" - }, - "type" : "LinearBasicDisplay", - "displayId" : "ref-2-ENCFF320ZRR-LinearBasicDisplay" - } + "trackId" : "c_elegans_PRJNA13758_ref-2-ENCFF320ZRR", + "assemblyNames" : [ + "c_elegans_PRJNA13758" ], "category" : [ "modERN", "late embryonic" ], - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], - "name" : "ref-2" - }, - { - "name" : "nhr-179", - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], "displays" : [ { + "displayId" : "ref-2-ENCFF320ZRR-LinearBasicDisplay", "renderer" : { "height" : 6, "color1" : "blue", "type" : "SvgFeatureRenderer" }, - "type" : "LinearBasicDisplay", - "displayId" : "nhr-179-ENCFF697CAP-LinearBasicDisplay" + "type" : "LinearBasicDisplay" } + ] + }, + { + "trackId" : "c_elegans_PRJNA13758_nhr-179-ENCFF697CAP", + "assemblyNames" : [ + "c_elegans_PRJNA13758" ], "category" : [ "modERN", "young adult" ], - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. 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Data for nhr-179 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF697CAP/ and for more information on this nhr-179 experiment, see https://www.encodeproject.org/experiments/ENCSR710GXZ/." }, { - "name" : "syd-9", - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for syd-9 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF058IGA/ and for more information on this syd-9 experiment, see https://www.encodeproject.org/experiments/ENCSR447EUI/.", - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], + "type" : "FeatureTrack", "adapter" : { "bigBedLocation" : { "locationType" : "UriLocation", @@ -40431,119 +39867,124 @@ }, "type" : "BigBedAdapter" }, - "type" : "FeatureTrack", + "name" : "syd-9", + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for syd-9 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF058IGA/ and for more information on this syd-9 experiment, see https://www.encodeproject.org/experiments/ENCSR447EUI/.", + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], "category" : [ "modERN", "late embryonic" ], + "trackId" : "c_elegans_PRJNA13758_syd-9-ENCFF058IGA", "displays" : [ { "renderer" : { - "height" : 6, + "color1" : "blue", "type" : "SvgFeatureRenderer", - "color1" : "blue" + "height" : 6 }, "type" : "LinearBasicDisplay", "displayId" : "syd-9-ENCFF058IGA-LinearBasicDisplay" } - ], - "trackId" : "c_elegans_PRJNA13758_syd-9-ENCFF058IGA" + ] }, { + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for hrde-1 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF986COB/ and for more information on this hrde-1 experiment, see https://www.encodeproject.org/experiments/ENCSR548OPZ/.", + "name" : "hrde-1", + "adapter" : { + "bigBedLocation" : { + "uri" : "https://www.encodeproject.org/files/ENCFF986COB/@@download/ENCFF986COB.bigBed", + "locationType" : "UriLocation" + }, + "type" : "BigBedAdapter" + }, + "type" : "FeatureTrack", "displays" : [ { "renderer" : { - "height" : 6, + "type" : "SvgFeatureRenderer", "color1" : "blue", - "type" : "SvgFeatureRenderer" + "height" : 6 }, "type" : "LinearBasicDisplay", "displayId" : "hrde-1-ENCFF986COB-LinearBasicDisplay" } ], + "trackId" : "c_elegans_PRJNA13758_hrde-1-ENCFF986COB", "category" : [ "modERN", "young adult" ], - "name" : "hrde-1", "assemblyNames" : [ "c_elegans_PRJNA13758" - ], - "trackId" : "c_elegans_PRJNA13758_hrde-1-ENCFF986COB", - "adapter" : { - "type" : "BigBedAdapter", - "bigBedLocation" : { - "locationType" : "UriLocation", - "uri" : "https://www.encodeproject.org/files/ENCFF986COB/@@download/ENCFF986COB.bigBed" - } - }, - "type" : "FeatureTrack", - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for hrde-1 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF986COB/ and for more information on this hrde-1 experiment, see https://www.encodeproject.org/experiments/ENCSR548OPZ/." + ] }, { - "type" : "FeatureTrack", - "adapter" : { - "bigBedLocation" : { - "locationType" : "UriLocation", - "uri" : "https://www.encodeproject.org/files/ENCFF092GJQ/@@download/ENCFF092GJQ.bigBed" - }, - "type" : "BigBedAdapter" - }, - "trackId" : "c_elegans_PRJNA13758_aly-1-ENCFF092GJQ", - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for aly-1 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF092GJQ/ and for more information on this aly-1 experiment, see https://www.encodeproject.org/experiments/ENCSR836LVI/.", - "category" : [ - "modERN", - "early embryonic" - ], "displays" : [ { "displayId" : "aly-1-ENCFF092GJQ-LinearBasicDisplay", - "type" : "LinearBasicDisplay", "renderer" : { - "type" : "SvgFeatureRenderer", "color1" : "blue", + "type" : "SvgFeatureRenderer", "height" : 6 - } + }, + "type" : "LinearBasicDisplay" } ], + "trackId" : "c_elegans_PRJNA13758_aly-1-ENCFF092GJQ", + "category" : [ + "modERN", + "early embryonic" + ], "assemblyNames" : [ "c_elegans_PRJNA13758" ], - "name" : "aly-1" - }, - { - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for elt-4 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF118UUK/ and for more information on this elt-4 experiment, see https://www.encodeproject.org/experiments/ENCSR714ZDK/.", - "type" : "FeatureTrack", + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for aly-1 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF092GJQ/ and for more information on this aly-1 experiment, see https://www.encodeproject.org/experiments/ENCSR836LVI/.", + "name" : "aly-1", "adapter" : { "bigBedLocation" : { "locationType" : "UriLocation", - "uri" : "https://www.encodeproject.org/files/ENCFF118UUK/@@download/ENCFF118UUK.bigBed" + "uri" : "https://www.encodeproject.org/files/ENCFF092GJQ/@@download/ENCFF092GJQ.bigBed" }, "type" : "BigBedAdapter" }, - "trackId" : "c_elegans_PRJNA13758_elt-4-ENCFF118UUK", - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], - "name" : "elt-4", + "type" : "FeatureTrack" + }, + { "category" : [ "modERN", "late embryonic" ], + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], + "trackId" : "c_elegans_PRJNA13758_elt-4-ENCFF118UUK", "displays" : [ { + "type" : "LinearBasicDisplay", "renderer" : { - "color1" : "blue", + "height" : 6, "type" : "SvgFeatureRenderer", - "height" : 6 + "color1" : "blue" }, - "type" : "LinearBasicDisplay", "displayId" : "elt-4-ENCFF118UUK-LinearBasicDisplay" } - ] + ], + "type" : "FeatureTrack", + "adapter" : { + "bigBedLocation" : { + "uri" : "https://www.encodeproject.org/files/ENCFF118UUK/@@download/ENCFF118UUK.bigBed", + "locationType" : "UriLocation" + }, + "type" : "BigBedAdapter" + }, + "name" : "elt-4", + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for elt-4 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF118UUK/ and for more information on this elt-4 experiment, see https://www.encodeproject.org/experiments/ENCSR714ZDK/." }, { - "trackId" : "c_elegans_PRJNA13758_fax-1-ENCFF333ESJ", + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for fax-1 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF333ESJ/ and for more information on this fax-1 experiment, see https://www.encodeproject.org/experiments/ENCSR517JNQ/.", + "name" : "fax-1", "type" : "FeatureTrack", "adapter" : { "bigBedLocation" : { @@ -40552,166 +39993,151 @@ }, "type" : "BigBedAdapter" }, - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for fax-1 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF333ESJ/ and for more information on this fax-1 experiment, see https://www.encodeproject.org/experiments/ENCSR517JNQ/.", "displays" : [ { "displayId" : "fax-1-ENCFF333ESJ-LinearBasicDisplay", - "type" : "LinearBasicDisplay", "renderer" : { - "color1" : "blue", + "height" : 6, "type" : "SvgFeatureRenderer", - "height" : 6 - } + "color1" : "blue" + }, + "type" : "LinearBasicDisplay" } ], - "category" : [ - "modERN", - "late embryonic" - ], + "trackId" : "c_elegans_PRJNA13758_fax-1-ENCFF333ESJ", "assemblyNames" : [ "c_elegans_PRJNA13758" ], - "name" : "fax-1" + "category" : [ + "modERN", + "late embryonic" + ] }, { - "name" : "xnd-1", - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], + "trackId" : "c_elegans_PRJNA13758_xnd-1-ENCFF214IKK", "category" : [ "modERN", "young adult" ], + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], "displays" : [ { + "displayId" : "xnd-1-ENCFF214IKK-LinearBasicDisplay", "type" : "LinearBasicDisplay", "renderer" : { - "height" : 6, + "color1" : "blue", "type" : "SvgFeatureRenderer", - "color1" : "blue" - }, - "displayId" : "xnd-1-ENCFF214IKK-LinearBasicDisplay" + "height" : 6 + } } ], - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for xnd-1 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF214IKK/ and for more information on this xnd-1 experiment, see https://www.encodeproject.org/experiments/ENCSR327NRA/.", + "name" : "xnd-1", "adapter" : { + "type" : "BigBedAdapter", "bigBedLocation" : { - "locationType" : "UriLocation", - "uri" : "https://www.encodeproject.org/files/ENCFF214IKK/@@download/ENCFF214IKK.bigBed" - }, - "type" : "BigBedAdapter" + "uri" : "https://www.encodeproject.org/files/ENCFF214IKK/@@download/ENCFF214IKK.bigBed", + "locationType" : "UriLocation" + } }, "type" : "FeatureTrack", - "trackId" : "c_elegans_PRJNA13758_xnd-1-ENCFF214IKK" + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for xnd-1 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF214IKK/ and for more information on this xnd-1 experiment, see https://www.encodeproject.org/experiments/ENCSR327NRA/." }, { + "type" : "FeatureTrack", "adapter" : { + "type" : "BigBedAdapter", "bigBedLocation" : { "locationType" : "UriLocation", "uri" : "https://www.encodeproject.org/files/ENCFF829GJL/@@download/ENCFF829GJL.bigBed" - }, - "type" : "BigBedAdapter" + } }, - "type" : "FeatureTrack", - "trackId" : "c_elegans_PRJNA13758_B0035.1-ENCFF829GJL", + "name" : "B0035.1", "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for B0035.1 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF829GJL/ and for more information on this B0035.1 experiment, see https://www.encodeproject.org/experiments/ENCSR450GPA/.", "category" : [ "modERN", "young adult" ], + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], + "trackId" : "c_elegans_PRJNA13758_B0035.1-ENCFF829GJL", "displays" : [ { "renderer" : { "height" : 6, - "type" : "SvgFeatureRenderer", - "color1" : "blue" + "color1" : "blue", + "type" : "SvgFeatureRenderer" }, "type" : "LinearBasicDisplay", "displayId" : "B0035.1-ENCFF829GJL-LinearBasicDisplay" } - ], - "name" : "B0035.1", - "assemblyNames" : [ - "c_elegans_PRJNA13758" ] }, { + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], + "category" : [ + "modERN", + "late embryonic" + ], + "trackId" : "c_elegans_PRJNA13758_nhr-232-ENCFF270KYW", "displays" : [ { - "type" : "LinearBasicDisplay", + "displayId" : "nhr-232-ENCFF270KYW-LinearBasicDisplay", "renderer" : { + "height" : 6, "type" : "SvgFeatureRenderer", - "color1" : "blue", - "height" : 6 + "color1" : "blue" }, - "displayId" : "nhr-232-ENCFF270KYW-LinearBasicDisplay" + "type" : "LinearBasicDisplay" } ], - "category" : [ - "modERN", - "late embryonic" - ], - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], - "name" : "nhr-232", - "trackId" : "c_elegans_PRJNA13758_nhr-232-ENCFF270KYW", "type" : "FeatureTrack", "adapter" : { "bigBedLocation" : { - "locationType" : "UriLocation", - "uri" : "https://www.encodeproject.org/files/ENCFF270KYW/@@download/ENCFF270KYW.bigBed" + "uri" : "https://www.encodeproject.org/files/ENCFF270KYW/@@download/ENCFF270KYW.bigBed", + "locationType" : "UriLocation" }, "type" : "BigBedAdapter" }, + "name" : "nhr-232", "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for nhr-232 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF270KYW/ and for more information on this nhr-232 experiment, see https://www.encodeproject.org/experiments/ENCSR182IGG/." }, { - "name" : "ceh-2", - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], "category" : [ "modERN", "late embryonic" ], + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], + "trackId" : "c_elegans_PRJNA13758_ceh-2-ENCFF736OZW", "displays" : [ { - "displayId" : "ceh-2-ENCFF736OZW-LinearBasicDisplay", "renderer" : { "color1" : "blue", "type" : "SvgFeatureRenderer", "height" : 6 }, - "type" : "LinearBasicDisplay" + "type" : "LinearBasicDisplay", + "displayId" : "ceh-2-ENCFF736OZW-LinearBasicDisplay" } ], - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for ceh-2 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF736OZW/ and for more information on this ceh-2 experiment, see https://www.encodeproject.org/experiments/ENCSR534TFA/.", "adapter" : { "type" : "BigBedAdapter", "bigBedLocation" : { - "locationType" : "UriLocation", - "uri" : "https://www.encodeproject.org/files/ENCFF736OZW/@@download/ENCFF736OZW.bigBed" + "uri" : "https://www.encodeproject.org/files/ENCFF736OZW/@@download/ENCFF736OZW.bigBed", + "locationType" : "UriLocation" } }, "type" : "FeatureTrack", - "trackId" : "c_elegans_PRJNA13758_ceh-2-ENCFF736OZW" + "name" : "ceh-2", + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for ceh-2 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF736OZW/ and for more information on this ceh-2 experiment, see https://www.encodeproject.org/experiments/ENCSR534TFA/." }, { - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for hlh-6 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF266AXA/ and for more information on this hlh-6 experiment, see https://www.encodeproject.org/experiments/ENCSR632XME/.", - "trackId" : "c_elegans_PRJNA13758_hlh-6-ENCFF266AXA", - "type" : "FeatureTrack", - "adapter" : { - "bigBedLocation" : { - "uri" : "https://www.encodeproject.org/files/ENCFF266AXA/@@download/ENCFF266AXA.bigBed", - "locationType" : "UriLocation" - }, - "type" : "BigBedAdapter" - }, - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], - "name" : "hlh-6", "displays" : [ { "displayId" : "hlh-6-ENCFF266AXA-LinearBasicDisplay", @@ -40726,48 +40152,54 @@ "category" : [ "modERN", "late embryonic" - ] - }, - { - "name" : "mes-2", + ], "assemblyNames" : [ "c_elegans_PRJNA13758" ], - "category" : [ - "modERN", - "L4 larva" - ], + "trackId" : "c_elegans_PRJNA13758_hlh-6-ENCFF266AXA", + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for hlh-6 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF266AXA/ and for more information on this hlh-6 experiment, see https://www.encodeproject.org/experiments/ENCSR632XME/.", + "type" : "FeatureTrack", + "adapter" : { + "bigBedLocation" : { + "locationType" : "UriLocation", + "uri" : "https://www.encodeproject.org/files/ENCFF266AXA/@@download/ENCFF266AXA.bigBed" + }, + "type" : "BigBedAdapter" + }, + "name" : "hlh-6" + }, + { "displays" : [ { "renderer" : { - "height" : 6, + "color1" : "blue", "type" : "SvgFeatureRenderer", - "color1" : "blue" + "height" : 6 }, "type" : "LinearBasicDisplay", "displayId" : "mes-2-ENCFF085YJC-LinearBasicDisplay" } ], + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], + "category" : [ + "modERN", + "L4 larva" + ], + "trackId" : "c_elegans_PRJNA13758_mes-2-ENCFF085YJC", "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for mes-2 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF085YJC/ and for more information on this mes-2 experiment, see https://www.encodeproject.org/experiments/ENCSR977VOU/.", "adapter" : { + "type" : "BigBedAdapter", "bigBedLocation" : { - "uri" : "https://www.encodeproject.org/files/ENCFF085YJC/@@download/ENCFF085YJC.bigBed", - "locationType" : "UriLocation" - }, - "type" : "BigBedAdapter" + "locationType" : "UriLocation", + "uri" : "https://www.encodeproject.org/files/ENCFF085YJC/@@download/ENCFF085YJC.bigBed" + } }, "type" : "FeatureTrack", - "trackId" : "c_elegans_PRJNA13758_mes-2-ENCFF085YJC" + "name" : "mes-2" }, { - "name" : "unc-42", - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], - "category" : [ - "modERN", - "late embryonic" - ], "displays" : [ { "renderer" : { @@ -40779,7 +40211,16 @@ "displayId" : "unc-42-ENCFF733JRA-LinearBasicDisplay" } ], + "trackId" : "c_elegans_PRJNA13758_unc-42-ENCFF733JRA", + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], + "category" : [ + "modERN", + "late embryonic" + ], "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for unc-42 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF733JRA/ and for more information on this unc-42 experiment, see https://www.encodeproject.org/experiments/ENCSR124XUB/.", + "name" : "unc-42", "adapter" : { "bigBedLocation" : { "uri" : "https://www.encodeproject.org/files/ENCFF733JRA/@@download/ENCFF733JRA.bigBed", @@ -40787,11 +40228,9 @@ }, "type" : "BigBedAdapter" }, - "type" : "FeatureTrack", - "trackId" : "c_elegans_PRJNA13758_unc-42-ENCFF733JRA" + "type" : "FeatureTrack" }, { - "name" : "F49E8.2", "assemblyNames" : [ "c_elegans_PRJNA13758" ], @@ -40799,63 +40238,62 @@ "modERN", "L4 larva" ], + "trackId" : "c_elegans_PRJNA13758_F49E8.2-ENCFF059PKB", "displays" : [ { + "displayId" : "F49E8.2-ENCFF059PKB-LinearBasicDisplay", + "type" : "LinearBasicDisplay", "renderer" : { - "type" : "SvgFeatureRenderer", "color1" : "blue", + "type" : "SvgFeatureRenderer", "height" : 6 - }, - "type" : "LinearBasicDisplay", - "displayId" : "F49E8.2-ENCFF059PKB-LinearBasicDisplay" + } } ], - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for F49E8.2 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF059PKB/ and for more information on this F49E8.2 experiment, see https://www.encodeproject.org/experiments/ENCSR013JXG/.", "adapter" : { + "type" : "BigBedAdapter", "bigBedLocation" : { "locationType" : "UriLocation", "uri" : "https://www.encodeproject.org/files/ENCFF059PKB/@@download/ENCFF059PKB.bigBed" - }, - "type" : "BigBedAdapter" + } }, "type" : "FeatureTrack", - "trackId" : "c_elegans_PRJNA13758_F49E8.2-ENCFF059PKB" + "name" : "F49E8.2", + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for F49E8.2 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF059PKB/ and for more information on this F49E8.2 experiment, see https://www.encodeproject.org/experiments/ENCSR013JXG/." }, { - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for die-1 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF167BVE/ and for more information on this die-1 experiment, see https://www.encodeproject.org/experiments/ENCSR962KSG/.", "trackId" : "c_elegans_PRJNA13758_die-1-ENCFF167BVE", - "type" : "FeatureTrack", - "adapter" : { - "bigBedLocation" : { - "locationType" : "UriLocation", - "uri" : "https://www.encodeproject.org/files/ENCFF167BVE/@@download/ENCFF167BVE.bigBed" - }, - "type" : "BigBedAdapter" - }, + "category" : [ + "modERN", + "young adult" + ], "assemblyNames" : [ "c_elegans_PRJNA13758" ], - "name" : "die-1", "displays" : [ { - "type" : "LinearBasicDisplay", + "displayId" : "die-1-ENCFF167BVE-LinearBasicDisplay", "renderer" : { "height" : 6, - "type" : "SvgFeatureRenderer", - "color1" : "blue" + "color1" : "blue", + "type" : "SvgFeatureRenderer" }, - "displayId" : "die-1-ENCFF167BVE-LinearBasicDisplay" + "type" : "LinearBasicDisplay" } ], - "category" : [ - "modERN", - "young adult" - ] + "name" : "die-1", + "type" : "FeatureTrack", + "adapter" : { + "bigBedLocation" : { + "locationType" : "UriLocation", + "uri" : "https://www.encodeproject.org/files/ENCFF167BVE/@@download/ENCFF167BVE.bigBed" + }, + "type" : "BigBedAdapter" + }, + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for die-1 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF167BVE/ and for more information on this die-1 experiment, see https://www.encodeproject.org/experiments/ENCSR962KSG/." }, { "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for sma-9 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF209LPE/ and for more information on this sma-9 experiment, see https://www.encodeproject.org/experiments/ENCSR639CLM/.", - "trackId" : "c_elegans_PRJNA13758_sma-9-ENCFF209LPE", - "type" : "FeatureTrack", "adapter" : { "type" : "BigBedAdapter", "bigBedLocation" : { @@ -40863,75 +40301,67 @@ "locationType" : "UriLocation" } }, - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], + "type" : "FeatureTrack", "name" : "sma-9", "displays" : [ { + "displayId" : "sma-9-ENCFF209LPE-LinearBasicDisplay", + "type" : "LinearBasicDisplay", "renderer" : { - "type" : "SvgFeatureRenderer", + "height" : 6, "color1" : "blue", - "height" : 6 - }, - "type" : "LinearBasicDisplay", - "displayId" : "sma-9-ENCFF209LPE-LinearBasicDisplay" + "type" : "SvgFeatureRenderer" + } } ], "category" : [ "modERN", "L2 larva" - ] + ], + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], + "trackId" : "c_elegans_PRJNA13758_sma-9-ENCFF209LPE" }, { - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for efl-1 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF127YXL/ and for more information on this efl-1 experiment, see https://www.encodeproject.org/experiments/ENCSR130CZH/.", - "name" : "efl-1", + "trackId" : "c_elegans_PRJNA13758_efl-1-ENCFF127YXL", + "category" : [ + "modERN", + "young adult" + ], "assemblyNames" : [ "c_elegans_PRJNA13758" ], "displays" : [ { - "type" : "LinearBasicDisplay", + "displayId" : "efl-1-ENCFF127YXL-LinearBasicDisplay", "renderer" : { "height" : 6, "color1" : "blue", "type" : "SvgFeatureRenderer" }, - "displayId" : "efl-1-ENCFF127YXL-LinearBasicDisplay" + "type" : "LinearBasicDisplay" } ], - "trackId" : "c_elegans_PRJNA13758_efl-1-ENCFF127YXL", + "name" : "efl-1", "adapter" : { "bigBedLocation" : { - "uri" : "https://www.encodeproject.org/files/ENCFF127YXL/@@download/ENCFF127YXL.bigBed", - "locationType" : "UriLocation" + "locationType" : "UriLocation", + "uri" : "https://www.encodeproject.org/files/ENCFF127YXL/@@download/ENCFF127YXL.bigBed" }, "type" : "BigBedAdapter" }, "type" : "FeatureTrack", - "category" : [ - "modERN", - "young adult" - ] + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for efl-1 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF127YXL/ and for more information on this efl-1 experiment, see https://www.encodeproject.org/experiments/ENCSR130CZH/." }, { - "trackId" : "c_elegans_PRJNA13758_rec-8-ENCFF523SUS", - "adapter" : { - "type" : "BigBedAdapter", - "bigBedLocation" : { - "locationType" : "UriLocation", - "uri" : "https://www.encodeproject.org/files/ENCFF523SUS/@@download/ENCFF523SUS.bigBed" - } - }, - "type" : "FeatureTrack", - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for rec-8 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF523SUS/ and for more information on this rec-8 experiment, see https://www.encodeproject.org/experiments/ENCSR689UBU/.", "displays" : [ { "displayId" : "rec-8-ENCFF523SUS-LinearBasicDisplay", "type" : "LinearBasicDisplay", "renderer" : { - "color1" : "blue", "type" : "SvgFeatureRenderer", + "color1" : "blue", "height" : 6 } } @@ -40940,20 +40370,40 @@ "modERN", "young adult" ], - "name" : "rec-8", "assemblyNames" : [ "c_elegans_PRJNA13758" - ] + ], + "trackId" : "c_elegans_PRJNA13758_rec-8-ENCFF523SUS", + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for rec-8 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF523SUS/ and for more information on this rec-8 experiment, see https://www.encodeproject.org/experiments/ENCSR689UBU/.", + "adapter" : { + "type" : "BigBedAdapter", + "bigBedLocation" : { + "locationType" : "UriLocation", + "uri" : "https://www.encodeproject.org/files/ENCFF523SUS/@@download/ENCFF523SUS.bigBed" + } + }, + "type" : "FeatureTrack", + "name" : "rec-8" }, { + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for ceh-31 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF473DVC/ and for more information on this ceh-31 experiment, see https://www.encodeproject.org/experiments/ENCSR420ATF/.", + "adapter" : { + "type" : "BigBedAdapter", + "bigBedLocation" : { + "locationType" : "UriLocation", + "uri" : "https://www.encodeproject.org/files/ENCFF473DVC/@@download/ENCFF473DVC.bigBed" + } + }, + "type" : "FeatureTrack", + "name" : "ceh-31", "displays" : [ { "displayId" : "ceh-31-ENCFF473DVC-LinearBasicDisplay", "type" : "LinearBasicDisplay", "renderer" : { - "height" : 6, "color1" : "blue", - "type" : "SvgFeatureRenderer" + "type" : "SvgFeatureRenderer", + "height" : 6 } } ], @@ -40961,86 +40411,74 @@ "modERN", "late embryonic" ], - "name" : "ceh-31", "assemblyNames" : [ "c_elegans_PRJNA13758" ], - "trackId" : "c_elegans_PRJNA13758_ceh-31-ENCFF473DVC", - "adapter" : { - "bigBedLocation" : { - "uri" : "https://www.encodeproject.org/files/ENCFF473DVC/@@download/ENCFF473DVC.bigBed", - "locationType" : "UriLocation" - }, - "type" : "BigBedAdapter" - }, - "type" : "FeatureTrack", - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. 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For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF792BGX/ and for more information on this nhr-43 experiment, see https://www.encodeproject.org/experiments/ENCSR394KNZ/.", - "category" : [ - "modERN", - "L3 larva" - ], "displays" : [ { "renderer" : { - "height" : 6, + "color1" : "blue", "type" : "SvgFeatureRenderer", - "color1" : "blue" + "height" : 6 }, "type" : "LinearBasicDisplay", "displayId" : "nhr-43-ENCFF792BGX-LinearBasicDisplay" } ], - "name" : "nhr-43", + "trackId" : "c_elegans_PRJNA13758_nhr-43-ENCFF792BGX", + "category" : [ + "modERN", + "L3 larva" + ], "assemblyNames" : [ "c_elegans_PRJNA13758" - ] - }, - { - "type" : "FeatureTrack", + ], + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for nhr-43 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF792BGX/ and for more information on this nhr-43 experiment, see https://www.encodeproject.org/experiments/ENCSR394KNZ/.", + "name" : "nhr-43", "adapter" : { - "type" : "BigBedAdapter", "bigBedLocation" : { "locationType" : "UriLocation", - "uri" : "https://www.encodeproject.org/files/ENCFF639WNE/@@download/ENCFF639WNE.bigBed" - } + "uri" : "https://www.encodeproject.org/files/ENCFF792BGX/@@download/ENCFF792BGX.bigBed" + }, + "type" : "BigBedAdapter" }, - "trackId" : "c_elegans_PRJNA13758_dsc-1-ENCFF639WNE", - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for dsc-1 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF639WNE/ and for more information on this dsc-1 experiment, see https://www.encodeproject.org/experiments/ENCSR489SGT/.", + "type" : "FeatureTrack" + }, + { "category" : [ "modERN", "L1 larva" ], + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], + "trackId" : "c_elegans_PRJNA13758_dsc-1-ENCFF639WNE", "displays" : [ { + "displayId" : "dsc-1-ENCFF639WNE-LinearBasicDisplay", "renderer" : { + "height" : 6, "type" : "SvgFeatureRenderer", - "color1" : "blue", - "height" : 6 + "color1" : "blue" }, - "type" : "LinearBasicDisplay", - "displayId" : "dsc-1-ENCFF639WNE-LinearBasicDisplay" + "type" : "LinearBasicDisplay" } ], - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], - "name" : "dsc-1" + "type" : "FeatureTrack", + "adapter" : { + "type" : "BigBedAdapter", + "bigBedLocation" : { + "uri" : "https://www.encodeproject.org/files/ENCFF639WNE/@@download/ENCFF639WNE.bigBed", + "locationType" : "UriLocation" + } + }, + "name" : "dsc-1", + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for dsc-1 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF639WNE/ and for more information on this dsc-1 experiment, see https://www.encodeproject.org/experiments/ENCSR489SGT/." }, { - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for rbr-2 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF823YFY/ and for more information on this rbr-2 experiment, see https://www.encodeproject.org/experiments/ENCSR274WQG/.", - "type" : "FeatureTrack", "adapter" : { "bigBedLocation" : { "uri" : "https://www.encodeproject.org/files/ENCFF823YFY/@@download/ENCFF823YFY.bigBed", @@ -41048,173 +40486,113 @@ }, "type" : "BigBedAdapter" }, - "trackId" : "c_elegans_PRJNA13758_rbr-2-ENCFF823YFY", - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], + "type" : "FeatureTrack", "name" : "rbr-2", + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for rbr-2 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF823YFY/ and for more information on this rbr-2 experiment, see https://www.encodeproject.org/experiments/ENCSR274WQG/.", "category" : [ "modERN", "L4 larva" ], + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], + "trackId" : "c_elegans_PRJNA13758_rbr-2-ENCFF823YFY", "displays" : [ { "displayId" : "rbr-2-ENCFF823YFY-LinearBasicDisplay", "renderer" : { + "height" : 6, "type" : "SvgFeatureRenderer", - "color1" : "blue", - "height" : 6 + "color1" : "blue" }, "type" : "LinearBasicDisplay" } ] }, { - "displays" : [ - { - "displayId" : "snpc-4-ENCFF867CXG-LinearBasicDisplay", - "type" : "LinearBasicDisplay", - "renderer" : { - "color1" : "blue", - "type" : "SvgFeatureRenderer", - "height" : 6 - } + "name" : "snpc-4", + "type" : "FeatureTrack", + "adapter" : { + "type" : "BigBedAdapter", + "bigBedLocation" : { + "uri" : "https://www.encodeproject.org/files/ENCFF867CXG/@@download/ENCFF867CXG.bigBed", + "locationType" : "UriLocation" } - ], + }, + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for snpc-4 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF867CXG/ and for more information on this snpc-4 experiment, see https://www.encodeproject.org/experiments/ENCSR032FII/.", + "trackId" : "c_elegans_PRJNA13758_snpc-4-ENCFF867CXG", "category" : [ "modERN", "young adult" ], - "name" : "snpc-4", "assemblyNames" : [ "c_elegans_PRJNA13758" ], - "trackId" : "c_elegans_PRJNA13758_snpc-4-ENCFF867CXG", - "adapter" : { - "bigBedLocation" : { - "locationType" : "UriLocation", - "uri" : "https://www.encodeproject.org/files/ENCFF867CXG/@@download/ENCFF867CXG.bigBed" - }, - "type" : "BigBedAdapter" - }, - "type" : "FeatureTrack", - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for snpc-4 was generated at the Kevin White, UChicago lab. 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For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF806XPK/ and for more information on this elt-1 experiment, see https://www.encodeproject.org/experiments/ENCSR715MIV/.", + "assemblyNames" : [ + "c_elegans_PRJNA13758" ], "category" : [ "modERN", - "L1 larva" - ], - "assemblyNames" : [ - "c_elegans_PRJNA13758" + "mixed stage (embryonic)" ], - "name" : "lir-3" - }, - { + "trackId" : "c_elegans_PRJNA13758_elt-1-ENCFF806XPK", "displays" : [ { - "displayId" : "let-607-ENCFF588EOS-LinearBasicDisplay", - "type" : "LinearBasicDisplay", + "displayId" : "elt-1-ENCFF806XPK-LinearBasicDisplay", "renderer" : { "height" : 6, "type" : "SvgFeatureRenderer", "color1" : "blue" - } - } - ], - "category" : [ - "modERN", - "young adult" - ], - "name" : "let-607", - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], - "trackId" : "c_elegans_PRJNA13758_let-607-ENCFF588EOS", - "adapter" : { - "type" : "BigBedAdapter", - "bigBedLocation" : { - "uri" : "https://www.encodeproject.org/files/ENCFF588EOS/@@download/ENCFF588EOS.bigBed", - "locationType" : "UriLocation" + }, + "type" : "LinearBasicDisplay" } - }, - "type" : "FeatureTrack", - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for let-607 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF588EOS/ and for more information on this let-607 experiment, see https://www.encodeproject.org/experiments/ENCSR701SBA/." + ] }, { - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for rnt-1 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF354YVJ/ and for more information on this rnt-1 experiment, see https://www.encodeproject.org/experiments/ENCSR427JJZ/.", - "type" : "FeatureTrack", "adapter" : { "bigBedLocation" : { "locationType" : "UriLocation", - "uri" : "https://www.encodeproject.org/files/ENCFF354YVJ/@@download/ENCFF354YVJ.bigBed" + "uri" : "https://www.encodeproject.org/files/ENCFF178NLM/@@download/ENCFF178NLM.bigBed" }, "type" : "BigBedAdapter" }, - "trackId" : "c_elegans_PRJNA13758_rnt-1-ENCFF354YVJ", + "type" : "FeatureTrack", + "name" : "lir-3", + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for lir-3 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF178NLM/ and for more information on this lir-3 experiment, see https://www.encodeproject.org/experiments/ENCSR258OFT/.", "assemblyNames" : [ "c_elegans_PRJNA13758" ], - "name" : "rnt-1", "category" : [ "modERN", - "late embryonic" + "L1 larva" ], + "trackId" : "c_elegans_PRJNA13758_lir-3-ENCFF178NLM", "displays" : [ { - "displayId" : "rnt-1-ENCFF354YVJ-LinearBasicDisplay", + "displayId" : "lir-3-ENCFF178NLM-LinearBasicDisplay", "type" : "LinearBasicDisplay", "renderer" : { "type" : "SvgFeatureRenderer", @@ -41225,574 +40603,636 @@ ] }, { + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for let-607 was generated at the Kevin White, UChicago lab. 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Data for mec-3 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF727NQQ/ and for more information on this mec-3 experiment, see https://www.encodeproject.org/experiments/ENCSR957OLT/.", - "trackId" : "c_elegans_PRJNA13758_mec-3-ENCFF727NQQ", + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ] + }, + { + "name" : "mec-3", "adapter" : { - "type" : "BigBedAdapter", "bigBedLocation" : { - "uri" : "https://www.encodeproject.org/files/ENCFF727NQQ/@@download/ENCFF727NQQ.bigBed", - "locationType" : "UriLocation" - } + "locationType" : "UriLocation", + "uri" : "https://www.encodeproject.org/files/ENCFF727NQQ/@@download/ENCFF727NQQ.bigBed" + }, + "type" : "BigBedAdapter" }, - "type" : "FeatureTrack" - }, - { + "type" : "FeatureTrack", + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for mec-3 was generated at the Kevin White, UChicago lab. 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For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF940KUE/ and for more information on this lim-6 experiment, see https://www.encodeproject.org/experiments/ENCSR753PGF/." - }, - { - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], - "name" : "cey-2", - "category" : [ - "modERN", - "L4 larva" - ], + "type" : "FeatureTrack", "displays" : [ { + "type" : "LinearBasicDisplay", "renderer" : { "type" : "SvgFeatureRenderer", "color1" : "blue", "height" : 6 }, - "type" : "LinearBasicDisplay", - "displayId" : "cey-2-ENCFF971JYG-LinearBasicDisplay" + "displayId" : "lim-6-ENCFF940KUE-LinearBasicDisplay" } ], + "trackId" : "c_elegans_PRJNA13758_lim-6-ENCFF940KUE", + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], + "category" : [ + "modERN", + "late embryonic" + ] + }, + { "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for cey-2 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF971JYG/ and for more information on this cey-2 experiment, see https://www.encodeproject.org/experiments/ENCSR456YDF/.", + "name" : "cey-2", "type" : "FeatureTrack", "adapter" : { "bigBedLocation" : { - "uri" : "https://www.encodeproject.org/files/ENCFF971JYG/@@download/ENCFF971JYG.bigBed", - "locationType" : "UriLocation" + "locationType" : "UriLocation", + "uri" : "https://www.encodeproject.org/files/ENCFF971JYG/@@download/ENCFF971JYG.bigBed" }, "type" : "BigBedAdapter" }, - "trackId" : "c_elegans_PRJNA13758_cey-2-ENCFF971JYG" - }, - { + "displays" : [ + { + "displayId" : "cey-2-ENCFF971JYG-LinearBasicDisplay", + "renderer" : { + "height" : 6, + "type" : "SvgFeatureRenderer", + "color1" : "blue" + }, + "type" : "LinearBasicDisplay" + } + ], + "trackId" : "c_elegans_PRJNA13758_cey-2-ENCFF971JYG", "assemblyNames" : [ "c_elegans_PRJNA13758" ], + "category" : [ + "modERN", + "L4 larva" + ] + }, + { + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for madf-10 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF363QUH/ and for more information on this madf-10 experiment, see https://www.encodeproject.org/experiments/ENCSR133RTP/.", + "adapter" : { + "bigBedLocation" : { + "uri" : "https://www.encodeproject.org/files/ENCFF363QUH/@@download/ENCFF363QUH.bigBed", + "locationType" : "UriLocation" + }, + "type" : "BigBedAdapter" + }, + "type" : "FeatureTrack", "name" : "madf-10", "displays" : [ { "type" : "LinearBasicDisplay", "renderer" : { - "height" : 6, "color1" : "blue", - "type" : "SvgFeatureRenderer" + "type" : "SvgFeatureRenderer", + "height" : 6 }, "displayId" : "madf-10-ENCFF363QUH-LinearBasicDisplay" } ], + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], "category" : [ "modERN", "young adult" ], - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for madf-10 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF363QUH/ and for more information on this madf-10 experiment, see https://www.encodeproject.org/experiments/ENCSR133RTP/.", - "trackId" : "c_elegans_PRJNA13758_madf-10-ENCFF363QUH", - "type" : "FeatureTrack", - "adapter" : { - "type" : "BigBedAdapter", - "bigBedLocation" : { - "uri" : "https://www.encodeproject.org/files/ENCFF363QUH/@@download/ENCFF363QUH.bigBed", - "locationType" : "UriLocation" - } - } + "trackId" : "c_elegans_PRJNA13758_madf-10-ENCFF363QUH" }, { + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], "category" : [ "modERN", "midembryonic" ], + "trackId" : "c_elegans_PRJNA13758_med-1-ENCFF487CDH", "displays" : [ { + "displayId" : "med-1-ENCFF487CDH-LinearBasicDisplay", "renderer" : { "color1" : "blue", "type" : "SvgFeatureRenderer", "height" : 6 }, - "type" : "LinearBasicDisplay", - "displayId" : "med-1-ENCFF487CDH-LinearBasicDisplay" + "type" : "LinearBasicDisplay" } ], - "name" : "med-1", - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], "adapter" : { "type" : "BigBedAdapter", "bigBedLocation" : { - "locationType" : "UriLocation", - "uri" : "https://www.encodeproject.org/files/ENCFF487CDH/@@download/ENCFF487CDH.bigBed" + "uri" : "https://www.encodeproject.org/files/ENCFF487CDH/@@download/ENCFF487CDH.bigBed", + "locationType" : "UriLocation" } }, "type" : "FeatureTrack", - "trackId" : "c_elegans_PRJNA13758_med-1-ENCFF487CDH", + "name" : "med-1", "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for med-1 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF487CDH/ and for more information on this med-1 experiment, see https://www.encodeproject.org/experiments/ENCSR397XGG/." }, { - "trackId" : "c_elegans_PRJNA13758_fkh-6-ENCFF530CJD", + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for fkh-6 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF530CJD/ and for more information on this fkh-6 experiment, see https://www.encodeproject.org/experiments/ENCSR695HLU/.", + "name" : "fkh-6", "adapter" : { + "type" : "BigBedAdapter", "bigBedLocation" : { "locationType" : "UriLocation", "uri" : "https://www.encodeproject.org/files/ENCFF530CJD/@@download/ENCFF530CJD.bigBed" - }, - "type" : "BigBedAdapter" + } }, "type" : "FeatureTrack", - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for fkh-6 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF530CJD/ and for more information on this fkh-6 experiment, see https://www.encodeproject.org/experiments/ENCSR695HLU/.", "displays" : [ { "displayId" : "fkh-6-ENCFF530CJD-LinearBasicDisplay", @@ -41804,37 +41244,23 @@ } } ], + "trackId" : "c_elegans_PRJNA13758_fkh-6-ENCFF530CJD", "category" : [ "modERN", "late embryonic" ], - "name" : "fkh-6", "assemblyNames" : [ "c_elegans_PRJNA13758" ] }, { - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for F13H6.1 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF575RXU/ and for more information on this F13H6.1 experiment, see https://www.encodeproject.org/experiments/ENCSR111LGE/.", - "trackId" : "c_elegans_PRJNA13758_F13H6.1-ENCFF575RXU", - "adapter" : { - "type" : "BigBedAdapter", - "bigBedLocation" : { - "uri" : "https://www.encodeproject.org/files/ENCFF575RXU/@@download/ENCFF575RXU.bigBed", - "locationType" : "UriLocation" - } - }, - "type" : "FeatureTrack", - "name" : "F13H6.1", - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], "displays" : [ { "type" : "LinearBasicDisplay", "renderer" : { - "type" : "SvgFeatureRenderer", + "height" : 6, "color1" : "blue", - "height" : 6 + "type" : "SvgFeatureRenderer" }, "displayId" : "F13H6.1-ENCFF575RXU-LinearBasicDisplay" } @@ -41842,82 +41268,96 @@ "category" : [ "modERN", "late embryonic" - ] - }, - { - "trackId" : "c_elegans_PRJNA13758_nhr-25-ENCFF650GUI", + ], + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], + "trackId" : "c_elegans_PRJNA13758_F13H6.1-ENCFF575RXU", + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for F13H6.1 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF575RXU/ and for more information on this F13H6.1 experiment, see https://www.encodeproject.org/experiments/ENCSR111LGE/.", "type" : "FeatureTrack", "adapter" : { "type" : "BigBedAdapter", "bigBedLocation" : { - "uri" : "https://www.encodeproject.org/files/ENCFF650GUI/@@download/ENCFF650GUI.bigBed", - "locationType" : "UriLocation" + "locationType" : "UriLocation", + "uri" : "https://www.encodeproject.org/files/ENCFF575RXU/@@download/ENCFF575RXU.bigBed" } }, + "name" : "F13H6.1" + }, + { "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for nhr-25 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF650GUI/ and for more information on this nhr-25 experiment, see https://www.encodeproject.org/experiments/ENCSR338HCL/.", + "name" : "nhr-25", + "adapter" : { + "bigBedLocation" : { + "locationType" : "UriLocation", + "uri" : "https://www.encodeproject.org/files/ENCFF650GUI/@@download/ENCFF650GUI.bigBed" + }, + "type" : "BigBedAdapter" + }, + "type" : "FeatureTrack", "displays" : [ { "displayId" : "nhr-25-ENCFF650GUI-LinearBasicDisplay", + "type" : "LinearBasicDisplay", "renderer" : { "type" : "SvgFeatureRenderer", "color1" : "blue", "height" : 6 - }, - "type" : "LinearBasicDisplay" + } } ], - "category" : [ - "modERN", - "L4 larva" - ], + "trackId" : "c_elegans_PRJNA13758_nhr-25-ENCFF650GUI", "assemblyNames" : [ "c_elegans_PRJNA13758" ], - "name" : "nhr-25" - }, - { "category" : [ "modERN", - "young adult" - ], + "L4 larva" + ] + }, + { "displays" : [ { - "displayId" : "T07F8.4-ENCFF204OYH-LinearBasicDisplay", "renderer" : { - "type" : "SvgFeatureRenderer", + "height" : 6, "color1" : "blue", - "height" : 6 + "type" : "SvgFeatureRenderer" }, - "type" : "LinearBasicDisplay" + "type" : "LinearBasicDisplay", + "displayId" : "T07F8.4-ENCFF204OYH-LinearBasicDisplay" } ], "assemblyNames" : [ "c_elegans_PRJNA13758" ], - "name" : "T07F8.4", + "category" : [ + "modERN", + "young adult" + ], + "trackId" : "c_elegans_PRJNA13758_T07F8.4-ENCFF204OYH", + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. 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For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF832PRA/ and for more information on this nhr-71 experiment, see https://www.encodeproject.org/experiments/ENCSR266SPL/.", + "name" : "nhr-71", "adapter" : { "type" : "BigBedAdapter", "bigBedLocation" : { - "locationType" : "UriLocation", - "uri" : "https://www.encodeproject.org/files/ENCFF832PRA/@@download/ENCFF832PRA.bigBed" + "uri" : "https://www.encodeproject.org/files/ENCFF832PRA/@@download/ENCFF832PRA.bigBed", + "locationType" : "UriLocation" } }, "type" : "FeatureTrack", + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for nhr-71 was generated at the Kevin White, UChicago lab. 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Data for lir-3 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF147OSA/ and for more information on this lir-3 experiment, see https://www.encodeproject.org/experiments/ENCSR408FDZ/.", - "trackId" : "c_elegans_PRJNA13758_lir-3-ENCFF147OSA", - "type" : "FeatureTrack", + "name" : "K09A11.1", "adapter" : { + "type" : "BigBedAdapter", "bigBedLocation" : { - "uri" : "https://www.encodeproject.org/files/ENCFF147OSA/@@download/ENCFF147OSA.bigBed", + "uri" : "https://www.encodeproject.org/files/ENCFF833CMT/@@download/ENCFF833CMT.bigBed", "locationType" : "UriLocation" - }, - "type" : "BigBedAdapter" + } }, - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], - "name" : "lir-3", + "type" : "FeatureTrack", + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for K09A11.1 was generated at the Kevin White, UChicago lab. 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For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF147OSA/ and for more information on this lir-3 experiment, see https://www.encodeproject.org/experiments/ENCSR408FDZ/.", + "adapter" : { + "bigBedLocation" : { + "locationType" : "UriLocation", + "uri" : "https://www.encodeproject.org/files/ENCFF147OSA/@@download/ENCFF147OSA.bigBed" + }, + "type" : "BigBedAdapter" + }, + "type" : "FeatureTrack", + "name" : "lir-3" }, { - "name" : "nhr-20", "assemblyNames" : [ "c_elegans_PRJNA13758" ], @@ -42008,94 +41447,130 @@ "modERN", "L1 larva" ], + "trackId" : "c_elegans_PRJNA13758_nhr-20-ENCFF528QQP", "displays" : [ { - "displayId" : "nhr-20-ENCFF528QQP-LinearBasicDisplay", + "type" : "LinearBasicDisplay", "renderer" : { "height" : 6, - "type" : "SvgFeatureRenderer", - "color1" : "blue" + "color1" : "blue", + "type" : "SvgFeatureRenderer" }, - "type" : "LinearBasicDisplay" + "displayId" : "nhr-20-ENCFF528QQP-LinearBasicDisplay" } ], - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for nhr-20 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF528QQP/ and for more information on this nhr-20 experiment, see https://www.encodeproject.org/experiments/ENCSR620JQF/.", + "type" : "FeatureTrack", "adapter" : { "type" : "BigBedAdapter", "bigBedLocation" : { - "locationType" : "UriLocation", - "uri" : "https://www.encodeproject.org/files/ENCFF528QQP/@@download/ENCFF528QQP.bigBed" + "uri" : "https://www.encodeproject.org/files/ENCFF528QQP/@@download/ENCFF528QQP.bigBed", + "locationType" : "UriLocation" } }, - "type" : "FeatureTrack", - "trackId" : "c_elegans_PRJNA13758_nhr-20-ENCFF528QQP" + "name" : "nhr-20", + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for nhr-20 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF528QQP/ and for more information on this nhr-20 experiment, see https://www.encodeproject.org/experiments/ENCSR620JQF/." }, { + "name" : "nfya-1", + "adapter" : { + "type" : "BigBedAdapter", + "bigBedLocation" : { + "locationType" : "UriLocation", + "uri" : "https://www.encodeproject.org/files/ENCFF567OHA/@@download/ENCFF567OHA.bigBed" + } + }, + "type" : "FeatureTrack", + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for nfya-1 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF567OHA/ and for more information on this nfya-1 experiment, see https://www.encodeproject.org/experiments/ENCSR653IDD/.", + "trackId" : "c_elegans_PRJNA13758_nfya-1-ENCFF567OHA", "category" : [ "modERN", "L3 larva" ], + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], "displays" : [ { + "type" : "LinearBasicDisplay", "renderer" : { "height" : 6, "type" : "SvgFeatureRenderer", "color1" : "blue" }, - "type" : "LinearBasicDisplay", "displayId" : "nfya-1-ENCFF567OHA-LinearBasicDisplay" } - ], - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], - "name" : "nfya-1", - "type" : "FeatureTrack", + ] + }, + { + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for F49E8.2 was generated at the Kevin White, UChicago lab. 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For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF567OHA/ and for more information on this nfya-1 experiment, see https://www.encodeproject.org/experiments/ENCSR653IDD/." - }, - { + "type" : "FeatureTrack", + "name" : "F49E8.2", "displays" : [ { - "displayId" : "F49E8.2-ENCFF333QZX-LinearBasicDisplay", - "type" : "LinearBasicDisplay", "renderer" : { - "type" : "SvgFeatureRenderer", "color1" : "blue", + "type" : "SvgFeatureRenderer", "height" : 6 - } + }, + "type" : "LinearBasicDisplay", + "displayId" : "F49E8.2-ENCFF333QZX-LinearBasicDisplay" } ], + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], "category" : [ "modERN", "young adult" ], + "trackId" : "c_elegans_PRJNA13758_F49E8.2-ENCFF333QZX" + }, + { + "displays" : [ + { + "displayId" : "dpl-1-ENCFF404BSG-LinearBasicDisplay", + "renderer" : { + "color1" : "blue", + "type" : "SvgFeatureRenderer", + "height" : 6 + }, + "type" : "LinearBasicDisplay" + } + ], + "trackId" : "c_elegans_PRJNA13758_dpl-1-ENCFF404BSG", "assemblyNames" : [ "c_elegans_PRJNA13758" ], - "name" : "F49E8.2", - "trackId" : "c_elegans_PRJNA13758_F49E8.2-ENCFF333QZX", + "category" : [ + "modERN", + "young adult" + ], + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for dpl-1 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF404BSG/ and for more information on this dpl-1 experiment, see https://www.encodeproject.org/experiments/ENCSR768FFN/.", + "name" : "dpl-1", "type" : "FeatureTrack", "adapter" : { "type" : "BigBedAdapter", "bigBedLocation" : { - "uri" : "https://www.encodeproject.org/files/ENCFF333QZX/@@download/ENCFF333QZX.bigBed", + "uri" : "https://www.encodeproject.org/files/ENCFF404BSG/@@download/ENCFF404BSG.bigBed", "locationType" : "UriLocation" } - }, - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for F49E8.2 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF333QZX/ and for more information on this F49E8.2 experiment, see https://www.encodeproject.org/experiments/ENCSR529PIJ/." + } }, { + "trackId" : "c_elegans_PRJNA13758_xbp-1-ENCFF827YCQ", "category" : [ "modERN", - "young adult" + "L1 larva" + ], + "assemblyNames" : [ + "c_elegans_PRJNA13758" ], "displays" : [ { @@ -42105,160 +41580,135 @@ "type" : "SvgFeatureRenderer" }, "type" : "LinearBasicDisplay", - "displayId" : "dpl-1-ENCFF404BSG-LinearBasicDisplay" + "displayId" : "xbp-1-ENCFF827YCQ-LinearBasicDisplay" } ], - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], - "name" : "dpl-1", - "type" : "FeatureTrack", + "name" : "xbp-1", "adapter" : { "type" : "BigBedAdapter", "bigBedLocation" : { "locationType" : "UriLocation", - "uri" : "https://www.encodeproject.org/files/ENCFF404BSG/@@download/ENCFF404BSG.bigBed" + "uri" : "https://www.encodeproject.org/files/ENCFF827YCQ/@@download/ENCFF827YCQ.bigBed" } }, - "trackId" : "c_elegans_PRJNA13758_dpl-1-ENCFF404BSG", - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for dpl-1 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF404BSG/ and for more information on this dpl-1 experiment, see https://www.encodeproject.org/experiments/ENCSR768FFN/." + "type" : "FeatureTrack", + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for xbp-1 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF827YCQ/ and for more information on this xbp-1 experiment, see https://www.encodeproject.org/experiments/ENCSR470XFF/." }, { - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], - "name" : "xbp-1", "displays" : [ { - "type" : "LinearBasicDisplay", "renderer" : { "height" : 6, - "type" : "SvgFeatureRenderer", - "color1" : "blue" + "color1" : "blue", + "type" : "SvgFeatureRenderer" }, - "displayId" : "xbp-1-ENCFF827YCQ-LinearBasicDisplay" + "type" : "LinearBasicDisplay", + "displayId" : "dmd-4-ENCFF449UDD-LinearBasicDisplay" } ], + "trackId" : "c_elegans_PRJNA13758_dmd-4-ENCFF449UDD", + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], "category" : [ "modERN", - "L1 larva" + "late embryonic" ], - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for xbp-1 was generated at the Kevin White, UChicago lab. 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For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF449UDD/ and for more information on this dmd-4 experiment, see https://www.encodeproject.org/experiments/ENCSR379UPR/.", + "name" : "dmd-4", "type" : "FeatureTrack", "adapter" : { "bigBedLocation" : { - "uri" : "https://www.encodeproject.org/files/ENCFF827YCQ/@@download/ENCFF827YCQ.bigBed", + "uri" : "https://www.encodeproject.org/files/ENCFF449UDD/@@download/ENCFF449UDD.bigBed", "locationType" : "UriLocation" }, "type" : "BigBedAdapter" } }, { - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for dmd-4 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF449UDD/ and for more information on this dmd-4 experiment, see https://www.encodeproject.org/experiments/ENCSR379UPR/.", - "type" : "FeatureTrack", - "adapter" : { - "type" : "BigBedAdapter", - "bigBedLocation" : { - "uri" : "https://www.encodeproject.org/files/ENCFF449UDD/@@download/ENCFF449UDD.bigBed", - "locationType" : "UriLocation" - } - }, - "trackId" : "c_elegans_PRJNA13758_dmd-4-ENCFF449UDD", + "trackId" : "c_elegans_PRJNA13758_swsn-7-ENCFF153GRE", + "category" : [ + "modERN", + "L1 larva" + ], "assemblyNames" : [ "c_elegans_PRJNA13758" ], - "name" : "dmd-4", - "category" : [ - "modERN", - "late embryonic" - ], "displays" : [ { - "displayId" : "dmd-4-ENCFF449UDD-LinearBasicDisplay", "type" : "LinearBasicDisplay", - "renderer" : { - "color1" : "blue", - "type" : "SvgFeatureRenderer", - "height" : 6 - } - } - ] - }, - { - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for swsn-7 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF153GRE/ and for more information on this swsn-7 experiment, see https://www.encodeproject.org/experiments/ENCSR406IHG/.", - "trackId" : "c_elegans_PRJNA13758_swsn-7-ENCFF153GRE", - "adapter" : { - "type" : "BigBedAdapter", - "bigBedLocation" : { - "uri" : "https://www.encodeproject.org/files/ENCFF153GRE/@@download/ENCFF153GRE.bigBed", - "locationType" : "UriLocation" - } - }, - "type" : "FeatureTrack", - "name" : "swsn-7", - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], - "displays" : [ - { "renderer" : { "height" : 6, - "type" : "SvgFeatureRenderer", - "color1" : "blue" + "color1" : "blue", + "type" : "SvgFeatureRenderer" }, - "type" : "LinearBasicDisplay", "displayId" : "swsn-7-ENCFF153GRE-LinearBasicDisplay" } ], - "category" : [ - "modERN", - "L1 larva" - ] + "name" : "swsn-7", + "type" : "FeatureTrack", + "adapter" : { + "bigBedLocation" : { + "locationType" : "UriLocation", + "uri" : "https://www.encodeproject.org/files/ENCFF153GRE/@@download/ENCFF153GRE.bigBed" + }, + "type" : "BigBedAdapter" + }, + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for swsn-7 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF153GRE/ and for more information on this swsn-7 experiment, see https://www.encodeproject.org/experiments/ENCSR406IHG/." }, { "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for snpc-4 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF786HUM/ and for more information on this snpc-4 experiment, see https://www.encodeproject.org/experiments/ENCSR623HHL/.", - "trackId" : "c_elegans_PRJNA13758_snpc-4-ENCFF786HUM", + "name" : "snpc-4", "type" : "FeatureTrack", "adapter" : { - "type" : "BigBedAdapter", "bigBedLocation" : { "uri" : "https://www.encodeproject.org/files/ENCFF786HUM/@@download/ENCFF786HUM.bigBed", "locationType" : "UriLocation" - } + }, + "type" : "BigBedAdapter" }, - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], - "name" : "snpc-4", "displays" : [ { + "displayId" : "snpc-4-ENCFF786HUM-LinearBasicDisplay", "renderer" : { "type" : "SvgFeatureRenderer", "color1" : "blue", "height" : 6 }, - "type" : "LinearBasicDisplay", - "displayId" : "snpc-4-ENCFF786HUM-LinearBasicDisplay" + "type" : "LinearBasicDisplay" } ], + "trackId" : "c_elegans_PRJNA13758_snpc-4-ENCFF786HUM", "category" : [ "modERN", "young adult" + ], + "assemblyNames" : [ + "c_elegans_PRJNA13758" ] }, { "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for sox-4 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF185TQQ/ and for more information on this sox-4 experiment, see https://www.encodeproject.org/experiments/ENCSR345JIR/.", + "type" : "FeatureTrack", "adapter" : { - "type" : "BigBedAdapter", "bigBedLocation" : { - "uri" : "https://www.encodeproject.org/files/ENCFF185TQQ/@@download/ENCFF185TQQ.bigBed", - "locationType" : "UriLocation" - } + "locationType" : "UriLocation", + "uri" : "https://www.encodeproject.org/files/ENCFF185TQQ/@@download/ENCFF185TQQ.bigBed" + }, + "type" : "BigBedAdapter" }, - "type" : "FeatureTrack", - "trackId" : "c_elegans_PRJNA13758_sox-4-ENCFF185TQQ", "name" : "sox-4", + "displays" : [ + { + "type" : "LinearBasicDisplay", + "renderer" : { + "color1" : "blue", + "type" : "SvgFeatureRenderer", + "height" : 6 + }, + "displayId" : "sox-4-ENCFF185TQQ-LinearBasicDisplay" + } + ], "assemblyNames" : [ "c_elegans_PRJNA13758" ], @@ -42266,85 +41716,89 @@ "modERN", "L1 larva" ], + "trackId" : "c_elegans_PRJNA13758_sox-4-ENCFF185TQQ" + }, + { + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for F37D6.2 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF916IJO/ and for more information on this F37D6.2 experiment, see https://www.encodeproject.org/experiments/ENCSR905YIL/.", + "name" : "F37D6.2", + "adapter" : { + "bigBedLocation" : { + "uri" : "https://www.encodeproject.org/files/ENCFF916IJO/@@download/ENCFF916IJO.bigBed", + "locationType" : "UriLocation" + }, + "type" : "BigBedAdapter" + }, + "type" : "FeatureTrack", "displays" : [ { + "displayId" : "F37D6.2-ENCFF916IJO-LinearBasicDisplay", + "type" : "LinearBasicDisplay", "renderer" : { - "height" : 6, + "type" : "SvgFeatureRenderer", "color1" : "blue", - "type" : "SvgFeatureRenderer" - }, - "type" : "LinearBasicDisplay", - "displayId" : "sox-4-ENCFF185TQQ-LinearBasicDisplay" + "height" : 6 + } } + ], + "trackId" : "c_elegans_PRJNA13758_F37D6.2-ENCFF916IJO", + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], + "category" : [ + "modERN", + "L4 larva" ] }, { - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for F37D6.2 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF916IJO/ and for more information on this F37D6.2 experiment, see https://www.encodeproject.org/experiments/ENCSR905YIL/.", + "name" : "ZK185.1", "type" : "FeatureTrack", "adapter" : { "type" : "BigBedAdapter", "bigBedLocation" : { "locationType" : "UriLocation", - "uri" : "https://www.encodeproject.org/files/ENCFF916IJO/@@download/ENCFF916IJO.bigBed" + "uri" : "https://www.encodeproject.org/files/ENCFF526KTZ/@@download/ENCFF526KTZ.bigBed" } }, - "trackId" : "c_elegans_PRJNA13758_F37D6.2-ENCFF916IJO", - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], - "name" : "F37D6.2", + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for ZK185.1 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF526KTZ/ and for more information on this ZK185.1 experiment, see https://www.encodeproject.org/experiments/ENCSR543FLP/.", + "trackId" : "c_elegans_PRJNA13758_ZK185.1-ENCFF526KTZ", "category" : [ "modERN", - "L4 larva" + "young adult" + ], + "assemblyNames" : [ + "c_elegans_PRJNA13758" ], "displays" : [ { - "displayId" : "F37D6.2-ENCFF916IJO-LinearBasicDisplay", + "displayId" : "ZK185.1-ENCFF526KTZ-LinearBasicDisplay", "renderer" : { - "height" : 6, "type" : "SvgFeatureRenderer", - "color1" : "blue" + "color1" : "blue", + "height" : 6 }, "type" : "LinearBasicDisplay" } ] }, { - "trackId" : "c_elegans_PRJNA13758_ZK185.1-ENCFF526KTZ", - "type" : "FeatureTrack", + "name" : "hlh-30", "adapter" : { "bigBedLocation" : { - "uri" : "https://www.encodeproject.org/files/ENCFF526KTZ/@@download/ENCFF526KTZ.bigBed", - "locationType" : "UriLocation" + "locationType" : "UriLocation", + "uri" : "https://www.encodeproject.org/files/ENCFF283COC/@@download/ENCFF283COC.bigBed" }, "type" : "BigBedAdapter" }, - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for ZK185.1 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF526KTZ/ and for more information on this ZK185.1 experiment, see https://www.encodeproject.org/experiments/ENCSR543FLP/.", - "displays" : [ - { - "displayId" : "ZK185.1-ENCFF526KTZ-LinearBasicDisplay", - "renderer" : { - "type" : "SvgFeatureRenderer", - "color1" : "blue", - "height" : 6 - }, - "type" : "LinearBasicDisplay" - } - ], - "category" : [ - "modERN", - "young adult" - ], + "type" : "FeatureTrack", + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for hlh-30 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF283COC/ and for more information on this hlh-30 experiment, see https://www.encodeproject.org/experiments/ENCSR246PQU/.", + "trackId" : "c_elegans_PRJNA13758_hlh-30-ENCFF283COC", "assemblyNames" : [ "c_elegans_PRJNA13758" ], - "name" : "ZK185.1" - }, - { - "assemblyNames" : [ - "c_elegans_PRJNA13758" + "category" : [ + "modERN", + "L4 larva" ], - "name" : "hlh-30", "displays" : [ { "displayId" : "hlh-30-ENCFF283COC-LinearBasicDisplay", @@ -42355,23 +41809,11 @@ }, "type" : "LinearBasicDisplay" } - ], - "category" : [ - "modERN", - "L4 larva" - ], - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for hlh-30 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF283COC/ and for more information on this hlh-30 experiment, see https://www.encodeproject.org/experiments/ENCSR246PQU/.", - "trackId" : "c_elegans_PRJNA13758_hlh-30-ENCFF283COC", - "type" : "FeatureTrack", - "adapter" : { - "bigBedLocation" : { - "locationType" : "UriLocation", - "uri" : "https://www.encodeproject.org/files/ENCFF283COC/@@download/ENCFF283COC.bigBed" - }, - "type" : "BigBedAdapter" - } + ] }, { + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for daf-16 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF738DCR/ and for more information on this daf-16 experiment, see https://www.encodeproject.org/experiments/ENCSR946AUI/.", + "type" : "FeatureTrack", "adapter" : { "type" : "BigBedAdapter", "bigBedLocation" : { @@ -42379,94 +41821,92 @@ "uri" : "https://www.encodeproject.org/files/ENCFF738DCR/@@download/ENCFF738DCR.bigBed" } }, - "type" : "FeatureTrack", - "trackId" : "c_elegans_PRJNA13758_daf-16-ENCFF738DCR", - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for daf-16 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF738DCR/ and for more information on this daf-16 experiment, see https://www.encodeproject.org/experiments/ENCSR946AUI/.", - "category" : [ - "modERN", - "L4 larva" - ], + "name" : "daf-16", "displays" : [ { "renderer" : { - "height" : 6, "type" : "SvgFeatureRenderer", - "color1" : "blue" + "color1" : "blue", + "height" : 6 }, "type" : "LinearBasicDisplay", "displayId" : "daf-16-ENCFF738DCR-LinearBasicDisplay" } ], - "name" : "daf-16", + "category" : [ + "modERN", + "L4 larva" + ], "assemblyNames" : [ "c_elegans_PRJNA13758" - ] + ], + "trackId" : "c_elegans_PRJNA13758_daf-16-ENCFF738DCR" }, { + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for efl-1 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF814OEZ/ and for more information on this efl-1 experiment, see https://www.encodeproject.org/experiments/ENCSR622QSS/.", "type" : "FeatureTrack", - "category" : [ - "modERN", - "young adult" - ], "adapter" : { + "type" : "BigBedAdapter", "bigBedLocation" : { - "uri" : "https://www.encodeproject.org/files/ENCFF814OEZ/@@download/ENCFF814OEZ.bigBed", - "locationType" : "UriLocation" - }, - "type" : "BigBedAdapter" + "locationType" : "UriLocation", + "uri" : "https://www.encodeproject.org/files/ENCFF814OEZ/@@download/ENCFF814OEZ.bigBed" + } }, - "trackId" : "c_elegans_PRJNA13758_efl-1-ENCFF814OEZ", + "name" : "efl-1", "displays" : [ { + "displayId" : "efl-1-ENCFF814OEZ-LinearBasicDisplay", "type" : "LinearBasicDisplay", "renderer" : { - "color1" : "blue", "type" : "SvgFeatureRenderer", + "color1" : "blue", "height" : 6 - }, - "displayId" : "efl-1-ENCFF814OEZ-LinearBasicDisplay" + } } ], + "category" : [ + "modERN", + "young adult" + ], "assemblyNames" : [ "c_elegans_PRJNA13758" ], - "name" : "efl-1", - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for efl-1 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF814OEZ/ and for more information on this efl-1 experiment, see https://www.encodeproject.org/experiments/ENCSR622QSS/." + "trackId" : "c_elegans_PRJNA13758_efl-1-ENCFF814OEZ" }, { - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for egl-13 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF171PAS/ and for more information on this egl-13 experiment, see https://www.encodeproject.org/experiments/ENCSR522TSE/.", "trackId" : "c_elegans_PRJNA13758_egl-13-ENCFF171PAS", - "adapter" : { - "type" : "BigBedAdapter", - "bigBedLocation" : { - "locationType" : "UriLocation", - "uri" : "https://www.encodeproject.org/files/ENCFF171PAS/@@download/ENCFF171PAS.bigBed" - } - }, - "type" : "FeatureTrack", - "name" : "egl-13", + "category" : [ + "modERN", + "L1 larva" + ], "assemblyNames" : [ "c_elegans_PRJNA13758" ], "displays" : [ { + "displayId" : "egl-13-ENCFF171PAS-LinearBasicDisplay", "type" : "LinearBasicDisplay", "renderer" : { "height" : 6, "color1" : "blue", "type" : "SvgFeatureRenderer" - }, - "displayId" : "egl-13-ENCFF171PAS-LinearBasicDisplay" + } } ], - "category" : [ - "modERN", - "L1 larva" - ] + "name" : "egl-13", + "adapter" : { + "type" : "BigBedAdapter", + "bigBedLocation" : { + "locationType" : "UriLocation", + "uri" : "https://www.encodeproject.org/files/ENCFF171PAS/@@download/ENCFF171PAS.bigBed" + } + }, + "type" : "FeatureTrack", + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for egl-13 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF171PAS/ and for more information on this egl-13 experiment, see https://www.encodeproject.org/experiments/ENCSR522TSE/." }, { - "trackId" : "c_elegans_PRJNA13758_dve-1-ENCFF808FTE", - "type" : "FeatureTrack", + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for dve-1 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF808FTE/ and for more information on this dve-1 experiment, see https://www.encodeproject.org/experiments/ENCSR694VLW/.", + "name" : "dve-1", "adapter" : { "type" : "BigBedAdapter", "bigBedLocation" : { @@ -42474,48 +41914,48 @@ "uri" : "https://www.encodeproject.org/files/ENCFF808FTE/@@download/ENCFF808FTE.bigBed" } }, - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for dve-1 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF808FTE/ and for more information on this dve-1 experiment, see https://www.encodeproject.org/experiments/ENCSR694VLW/.", + "type" : "FeatureTrack", "displays" : [ { "renderer" : { "height" : 6, - "color1" : "blue", - "type" : "SvgFeatureRenderer" + "type" : "SvgFeatureRenderer", + "color1" : "blue" }, "type" : "LinearBasicDisplay", "displayId" : "dve-1-ENCFF808FTE-LinearBasicDisplay" } ], + "trackId" : "c_elegans_PRJNA13758_dve-1-ENCFF808FTE", "category" : [ "modERN", "L4 larva" ], "assemblyNames" : [ "c_elegans_PRJNA13758" - ], - "name" : "dve-1" + ] }, { "displays" : [ { + "displayId" : "daf-16-ENCFF626HBN-LinearBasicDisplay", "type" : "LinearBasicDisplay", "renderer" : { - "height" : 6, "type" : "SvgFeatureRenderer", - "color1" : "blue" - }, - "displayId" : "daf-16-ENCFF626HBN-LinearBasicDisplay" + "color1" : "blue", + "height" : 6 + } } ], + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], "category" : [ "modERN", "L4 larva" ], - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], - "name" : "daf-16", "trackId" : "c_elegans_PRJNA13758_daf-16-ENCFF626HBN", + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for daf-16 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF626HBN/ and for more information on this daf-16 experiment, see https://www.encodeproject.org/experiments/ENCSR081BBL/.", "type" : "FeatureTrack", "adapter" : { "bigBedLocation" : { @@ -42524,9 +41964,13 @@ }, "type" : "BigBedAdapter" }, - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for daf-16 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF626HBN/ and for more information on this daf-16 experiment, see https://www.encodeproject.org/experiments/ENCSR081BBL/." + "name" : "daf-16" }, { + "trackId" : "c_elegans_PRJNA13758_unc-130-ENCFF026EGR", + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], "category" : [ "modERN", "L4 larva" @@ -42534,82 +41978,59 @@ "displays" : [ { "displayId" : "unc-130-ENCFF026EGR-LinearBasicDisplay", - "type" : "LinearBasicDisplay", "renderer" : { - "height" : 6, "type" : "SvgFeatureRenderer", - "color1" : "blue" - } + "color1" : "blue", + "height" : 6 + }, + "type" : "LinearBasicDisplay" } ], "name" : "unc-130", - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], "adapter" : { + "type" : "BigBedAdapter", "bigBedLocation" : { - "uri" : "https://www.encodeproject.org/files/ENCFF026EGR/@@download/ENCFF026EGR.bigBed", - "locationType" : "UriLocation" - }, - "type" : "BigBedAdapter" + "locationType" : "UriLocation", + "uri" : "https://www.encodeproject.org/files/ENCFF026EGR/@@download/ENCFF026EGR.bigBed" + } }, "type" : "FeatureTrack", - "trackId" : "c_elegans_PRJNA13758_unc-130-ENCFF026EGR", "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for unc-130 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF026EGR/ and for more information on this unc-130 experiment, see https://www.encodeproject.org/experiments/ENCSR968HCJ/." }, { - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for ceh-32 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF712XFS/ and for more information on this ceh-32 experiment, see https://www.encodeproject.org/experiments/ENCSR329YGE/.", - "type" : "FeatureTrack", - "adapter" : { - "type" : "BigBedAdapter", - "bigBedLocation" : { - "uri" : "https://www.encodeproject.org/files/ENCFF712XFS/@@download/ENCFF712XFS.bigBed", - "locationType" : "UriLocation" - } - }, - "trackId" : "c_elegans_PRJNA13758_ceh-32-ENCFF712XFS", - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], - "name" : "ceh-32", - "category" : [ - "modERN", - "L4 larva" - ], "displays" : [ { "displayId" : "ceh-32-ENCFF712XFS-LinearBasicDisplay", "renderer" : { - "height" : 6, + "type" : "SvgFeatureRenderer", "color1" : "blue", - "type" : "SvgFeatureRenderer" + "height" : 6 }, "type" : "LinearBasicDisplay" } - ] - }, - { - "name" : "ets-4", - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], - "displays" : [ - { - "displayId" : "ets-4-ENCFF453AMX-LinearBasicDisplay", - "type" : "LinearBasicDisplay", - "renderer" : { - "color1" : "blue", - "type" : "SvgFeatureRenderer", - "height" : 6 - } - } ], "category" : [ "modERN", - "late embryonic" + "L4 larva" ], - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for ets-4 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF453AMX/ and for more information on this ets-4 experiment, see https://www.encodeproject.org/experiments/ENCSR260GEE/.", - "trackId" : "c_elegans_PRJNA13758_ets-4-ENCFF453AMX", + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], + "trackId" : "c_elegans_PRJNA13758_ceh-32-ENCFF712XFS", + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for ceh-32 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF712XFS/ and for more information on this ceh-32 experiment, see https://www.encodeproject.org/experiments/ENCSR329YGE/.", + "adapter" : { + "type" : "BigBedAdapter", + "bigBedLocation" : { + "uri" : "https://www.encodeproject.org/files/ENCFF712XFS/@@download/ENCFF712XFS.bigBed", + "locationType" : "UriLocation" + } + }, + "type" : "FeatureTrack", + "name" : "ceh-32" + }, + { + "name" : "ets-4", + "type" : "FeatureTrack", "adapter" : { "bigBedLocation" : { "uri" : "https://www.encodeproject.org/files/ENCFF453AMX/@@download/ENCFF453AMX.bigBed", @@ -42617,27 +42038,28 @@ }, "type" : "BigBedAdapter" }, - "type" : "FeatureTrack" - }, - { + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for ets-4 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF453AMX/ and for more information on this ets-4 experiment, see https://www.encodeproject.org/experiments/ENCSR260GEE/.", + "trackId" : "c_elegans_PRJNA13758_ets-4-ENCFF453AMX", "category" : [ "modERN", - "young adult" + "late embryonic" + ], + "assemblyNames" : [ + "c_elegans_PRJNA13758" ], "displays" : [ { + "displayId" : "ets-4-ENCFF453AMX-LinearBasicDisplay", "renderer" : { + "height" : 6, "type" : "SvgFeatureRenderer", - "color1" : "blue", - "height" : 6 + "color1" : "blue" }, - "type" : "LinearBasicDisplay", - "displayId" : "unc-130-ENCFF800ALO-LinearBasicDisplay" + "type" : "LinearBasicDisplay" } - ], - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], + ] + }, + { "name" : "unc-130", "type" : "FeatureTrack", "adapter" : { @@ -42647,134 +42069,171 @@ "uri" : "https://www.encodeproject.org/files/ENCFF800ALO/@@download/ENCFF800ALO.bigBed" } }, + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for unc-130 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF800ALO/ and for more information on this unc-130 experiment, see https://www.encodeproject.org/experiments/ENCSR435FDM/.", "trackId" : "c_elegans_PRJNA13758_unc-130-ENCFF800ALO", - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for unc-130 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF800ALO/ and for more information on this unc-130 experiment, see https://www.encodeproject.org/experiments/ENCSR435FDM/." - }, - { - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], - "name" : "hlh-30", "category" : [ "modERN", - "late embryonic" + "young adult" + ], + "assemblyNames" : [ + "c_elegans_PRJNA13758" ], "displays" : [ { + "displayId" : "unc-130-ENCFF800ALO-LinearBasicDisplay", + "type" : "LinearBasicDisplay", "renderer" : { "height" : 6, "color1" : "blue", "type" : "SvgFeatureRenderer" - }, + } + } + ] + }, + { + "displays" : [ + { "type" : "LinearBasicDisplay", + "renderer" : { + "color1" : "blue", + "type" : "SvgFeatureRenderer", + "height" : 6 + }, "displayId" : "hlh-30-ENCFF206SEQ-LinearBasicDisplay" } ], + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], + "category" : [ + "modERN", + "late embryonic" + ], + "trackId" : "c_elegans_PRJNA13758_hlh-30-ENCFF206SEQ", "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for hlh-30 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF206SEQ/ and for more information on this hlh-30 experiment, see https://www.encodeproject.org/experiments/ENCSR091KQX/.", - "type" : "FeatureTrack", "adapter" : { + "type" : "BigBedAdapter", "bigBedLocation" : { "locationType" : "UriLocation", "uri" : "https://www.encodeproject.org/files/ENCFF206SEQ/@@download/ENCFF206SEQ.bigBed" - }, - "type" : "BigBedAdapter" + } }, - "trackId" : "c_elegans_PRJNA13758_hlh-30-ENCFF206SEQ" + "type" : "FeatureTrack", + "name" : "hlh-30" }, { + "trackId" : "c_elegans_PRJNA13758_rnt-1-ENCFF184OQV", + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], + "category" : [ + "modERN", + "L1 larva" + ], "displays" : [ { "displayId" : "rnt-1-ENCFF184OQV-LinearBasicDisplay", - "type" : "LinearBasicDisplay", "renderer" : { "height" : 6, "type" : "SvgFeatureRenderer", "color1" : "blue" - } + }, + "type" : "LinearBasicDisplay" } ], - "trackId" : "c_elegans_PRJNA13758_rnt-1-ENCFF184OQV", + "name" : "rnt-1", + "type" : "FeatureTrack", "adapter" : { + "type" : "BigBedAdapter", "bigBedLocation" : { "uri" : "https://www.encodeproject.org/files/ENCFF184OQV/@@download/ENCFF184OQV.bigBed", "locationType" : "UriLocation" - }, - "type" : "BigBedAdapter" + } }, - "type" : "FeatureTrack", - "category" : [ - "modERN", - "L1 larva" - ], - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for rnt-1 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF184OQV/ and for more information on this rnt-1 experiment, see https://www.encodeproject.org/experiments/ENCSR597WQR/.", - "name" : "rnt-1", - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ] + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for rnt-1 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF184OQV/ and for more information on this rnt-1 experiment, see https://www.encodeproject.org/experiments/ENCSR597WQR/." }, { "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for duxl-1 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF165NJP/ and for more information on this duxl-1 experiment, see https://www.encodeproject.org/experiments/ENCSR674PDL/.", - "type" : "FeatureTrack", + "name" : "duxl-1", "adapter" : { - "type" : "BigBedAdapter", "bigBedLocation" : { "locationType" : "UriLocation", "uri" : "https://www.encodeproject.org/files/ENCFF165NJP/@@download/ENCFF165NJP.bigBed" - } + }, + "type" : "BigBedAdapter" }, - "trackId" : "c_elegans_PRJNA13758_duxl-1-ENCFF165NJP", - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], - "name" : "duxl-1", - "category" : [ - "modERN", - "L4 larva" - ], + "type" : "FeatureTrack", "displays" : [ { - "type" : "LinearBasicDisplay", "renderer" : { - "height" : 6, "color1" : "blue", - "type" : "SvgFeatureRenderer" + "type" : "SvgFeatureRenderer", + "height" : 6 }, + "type" : "LinearBasicDisplay", "displayId" : "duxl-1-ENCFF165NJP-LinearBasicDisplay" } + ], + "trackId" : "c_elegans_PRJNA13758_duxl-1-ENCFF165NJP", + "category" : [ + "modERN", + "L4 larva" + ], + "assemblyNames" : [ + "c_elegans_PRJNA13758" ] }, { - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], - "name" : "odd-2", "displays" : [ { - "displayId" : "odd-2-ENCFF388KLR-LinearBasicDisplay", + "type" : "LinearBasicDisplay", "renderer" : { "height" : 6, - "type" : "SvgFeatureRenderer", - "color1" : "blue" + "color1" : "blue", + "type" : "SvgFeatureRenderer" }, - "type" : "LinearBasicDisplay" + "displayId" : "odd-2-ENCFF388KLR-LinearBasicDisplay" } ], + "trackId" : "c_elegans_PRJNA13758_odd-2-ENCFF388KLR", + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], "category" : [ "modERN", "late embryonic" ], "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for odd-2 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF388KLR/ and for more information on this odd-2 experiment, see https://www.encodeproject.org/experiments/ENCSR426MPH/.", - "trackId" : "c_elegans_PRJNA13758_odd-2-ENCFF388KLR", + "name" : "odd-2", "type" : "FeatureTrack", "adapter" : { "bigBedLocation" : { - "locationType" : "UriLocation", - "uri" : "https://www.encodeproject.org/files/ENCFF388KLR/@@download/ENCFF388KLR.bigBed" + "uri" : "https://www.encodeproject.org/files/ENCFF388KLR/@@download/ENCFF388KLR.bigBed", + "locationType" : "UriLocation" }, "type" : "BigBedAdapter" } }, { + "displays" : [ + { + "renderer" : { + "type" : "SvgFeatureRenderer", + "color1" : "blue", + "height" : 6 + }, + "type" : "LinearBasicDisplay", + "displayId" : "nhr-90-ENCFF222AUT-LinearBasicDisplay" + } + ], + "category" : [ + "modERN", + "L1 larva" + ], + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], + "trackId" : "c_elegans_PRJNA13758_nhr-90-ENCFF222AUT", "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. 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For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF052YIV/ and for more information on this sdz-38 experiment, see https://www.encodeproject.org/experiments/ENCSR505TSF/.", - "trackId" : "c_elegans_PRJNA13758_sdz-38-ENCFF052YIV", + "name" : "sdz-38", "adapter" : { - "type" : "BigBedAdapter", "bigBedLocation" : { - "locationType" : "UriLocation", - "uri" : "https://www.encodeproject.org/files/ENCFF052YIV/@@download/ENCFF052YIV.bigBed" - } + "uri" : "https://www.encodeproject.org/files/ENCFF052YIV/@@download/ENCFF052YIV.bigBed", + "locationType" : "UriLocation" + }, + "type" : "BigBedAdapter" }, "type" : "FeatureTrack", - "name" : "sdz-38", - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], "displays" : [ { - "displayId" : "sdz-38-ENCFF052YIV-LinearBasicDisplay", "type" : "LinearBasicDisplay", "renderer" : { "height" : 6, - "type" : "SvgFeatureRenderer", - "color1" : "blue" - } + "color1" : "blue", + "type" : "SvgFeatureRenderer" + }, + "displayId" : "sdz-38-ENCFF052YIV-LinearBasicDisplay" } ], + "trackId" : "c_elegans_PRJNA13758_sdz-38-ENCFF052YIV", + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], "category" : [ "modERN", "young adult" ] }, { - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for hnd-1 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF967ZEP/ and for more information on this hnd-1 experiment, see https://www.encodeproject.org/experiments/ENCSR374HBD/.", - "type" : "FeatureTrack", + "name" : "hnd-1", "adapter" : { "type" : "BigBedAdapter", "bigBedLocation" : { - "locationType" : "UriLocation", - "uri" : "https://www.encodeproject.org/files/ENCFF967ZEP/@@download/ENCFF967ZEP.bigBed" + "uri" : "https://www.encodeproject.org/files/ENCFF967ZEP/@@download/ENCFF967ZEP.bigBed", + "locationType" : "UriLocation" } }, + "type" : "FeatureTrack", + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for hnd-1 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF967ZEP/ and for more information on this hnd-1 experiment, see https://www.encodeproject.org/experiments/ENCSR374HBD/.", "trackId" : "c_elegans_PRJNA13758_hnd-1-ENCFF967ZEP", "assemblyNames" : [ "c_elegans_PRJNA13758" ], - "name" : "hnd-1", "category" : [ "modERN", "early embryonic" ], "displays" : [ { - "displayId" : "hnd-1-ENCFF967ZEP-LinearBasicDisplay", + "type" : "LinearBasicDisplay", "renderer" : { - "height" : 6, "color1" : "blue", - "type" : "SvgFeatureRenderer" + "type" : "SvgFeatureRenderer", + "height" : 6 }, - "type" : "LinearBasicDisplay" + "displayId" : "hnd-1-ENCFF967ZEP-LinearBasicDisplay" } ] }, { + "type" : "FeatureTrack", "adapter" : { "type" : "BigBedAdapter", "bigBedLocation" : { - "locationType" : "UriLocation", - "uri" : "https://www.encodeproject.org/files/ENCFF226OII/@@download/ENCFF226OII.bigBed" + "uri" : "https://www.encodeproject.org/files/ENCFF226OII/@@download/ENCFF226OII.bigBed", + "locationType" : "UriLocation" } }, - "type" : "FeatureTrack", - "trackId" : "c_elegans_PRJNA13758_mel-28-ENCFF226OII", + "name" : "mel-28", "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for mel-28 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF226OII/ and for more information on this mel-28 experiment, see https://www.encodeproject.org/experiments/ENCSR518VJU/.", + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], "category" : [ "modERN", "young adult" ], + "trackId" : "c_elegans_PRJNA13758_mel-28-ENCFF226OII", "displays" : [ { - "displayId" : "mel-28-ENCFF226OII-LinearBasicDisplay", + "type" : "LinearBasicDisplay", "renderer" : { - "color1" : "blue", "type" : "SvgFeatureRenderer", + "color1" : "blue", "height" : 6 }, - "type" : "LinearBasicDisplay" + "displayId" : "mel-28-ENCFF226OII-LinearBasicDisplay" } - ], - "name" : "mel-28", - "assemblyNames" : [ - "c_elegans_PRJNA13758" ] }, { "assemblyNames" : [ "c_elegans_PRJNA13758" ], - "name" : "him-1", + "category" : [ + "modERN", + "L4_young adult" + ], + "trackId" : "c_elegans_PRJNA13758_him-1-ENCFF253FRD", "displays" : [ { - "displayId" : "him-1-ENCFF253FRD-LinearBasicDisplay", "renderer" : { "height" : 6, "type" : "SvgFeatureRenderer", "color1" : "blue" }, - "type" : "LinearBasicDisplay" + "type" : "LinearBasicDisplay", + "displayId" : "him-1-ENCFF253FRD-LinearBasicDisplay" } ], - "category" : [ - "modERN", - "L4_young adult" - ], - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for him-1 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF253FRD/ and for more information on this him-1 experiment, see https://www.encodeproject.org/experiments/ENCSR607BSL/.", - "trackId" : "c_elegans_PRJNA13758_him-1-ENCFF253FRD", "type" : "FeatureTrack", "adapter" : { "type" : "BigBedAdapter", @@ -44012,10 +43450,13 @@ "locationType" : "UriLocation", "uri" : "https://www.encodeproject.org/files/ENCFF253FRD/@@download/ENCFF253FRD.bigBed" } - } + }, + "name" : "him-1", + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for him-1 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF253FRD/ and for more information on this him-1 experiment, see https://www.encodeproject.org/experiments/ENCSR607BSL/." }, { "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for snu-23 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF877FHQ/ and for more information on this snu-23 experiment, see https://www.encodeproject.org/experiments/ENCSR320MVY/.", + "type" : "FeatureTrack", "adapter" : { "bigBedLocation" : { "uri" : "https://www.encodeproject.org/files/ENCFF877FHQ/@@download/ENCFF877FHQ.bigBed", @@ -44023,205 +43464,203 @@ }, "type" : "BigBedAdapter" }, - "type" : "FeatureTrack", - "trackId" : "c_elegans_PRJNA13758_snu-23-ENCFF877FHQ", "name" : "snu-23", - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], - "category" : [ - "modERN", - "L1 larva" - ], "displays" : [ { - "displayId" : "snu-23-ENCFF877FHQ-LinearBasicDisplay", "renderer" : { "height" : 6, "color1" : "blue", "type" : "SvgFeatureRenderer" }, - "type" : "LinearBasicDisplay" - } - ] - }, - { - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for dao-5 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF034WER/ and for more information on this dao-5 experiment, see https://www.encodeproject.org/experiments/ENCSR213XFQ/.", - "adapter" : { - "type" : "BigBedAdapter", - "bigBedLocation" : { - "locationType" : "UriLocation", - "uri" : "https://www.encodeproject.org/files/ENCFF034WER/@@download/ENCFF034WER.bigBed" + "type" : "LinearBasicDisplay", + "displayId" : "snu-23-ENCFF877FHQ-LinearBasicDisplay" } - }, - "type" : "FeatureTrack", - "trackId" : "c_elegans_PRJNA13758_dao-5-ENCFF034WER", - "name" : "dao-5", + ], "assemblyNames" : [ "c_elegans_PRJNA13758" ], "category" : [ "modERN", - "L4_young adult" + "L1 larva" ], + "trackId" : "c_elegans_PRJNA13758_snu-23-ENCFF877FHQ" + }, + { "displays" : [ { "displayId" : "dao-5-ENCFF034WER-LinearBasicDisplay", + "type" : "LinearBasicDisplay", "renderer" : { - "height" : 6, + "color1" : "blue", "type" : "SvgFeatureRenderer", - "color1" : "blue" - }, - "type" : "LinearBasicDisplay" + "height" : 6 + } } - ] - }, - { - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for ceh-24 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF773RLK/ and for more information on this ceh-24 experiment, see https://www.encodeproject.org/experiments/ENCSR282OTW/.", - "trackId" : "c_elegans_PRJNA13758_ceh-24-ENCFF773RLK", + ], + "trackId" : "c_elegans_PRJNA13758_dao-5-ENCFF034WER", + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], + "category" : [ + "modERN", + "L4_young adult" + ], + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for dao-5 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF034WER/ and for more information on this dao-5 experiment, see https://www.encodeproject.org/experiments/ENCSR213XFQ/.", + "name" : "dao-5", "adapter" : { "type" : "BigBedAdapter", "bigBedLocation" : { - "uri" : "https://www.encodeproject.org/files/ENCFF773RLK/@@download/ENCFF773RLK.bigBed", + "uri" : "https://www.encodeproject.org/files/ENCFF034WER/@@download/ENCFF034WER.bigBed", "locationType" : "UriLocation" } }, - "type" : "FeatureTrack", - "name" : "ceh-24", - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], + "type" : "FeatureTrack" + }, + { "displays" : [ { - "type" : "LinearBasicDisplay", "renderer" : { "height" : 6, "color1" : "blue", "type" : "SvgFeatureRenderer" }, + "type" : "LinearBasicDisplay", "displayId" : "ceh-24-ENCFF773RLK-LinearBasicDisplay" } ], + "trackId" : "c_elegans_PRJNA13758_ceh-24-ENCFF773RLK", "category" : [ "modERN", "late embryonic" - ] + ], + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for ceh-24 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF773RLK/ and for more information on this ceh-24 experiment, see https://www.encodeproject.org/experiments/ENCSR282OTW/.", + "name" : "ceh-24", + "type" : "FeatureTrack", + "adapter" : { + "type" : "BigBedAdapter", + "bigBedLocation" : { + "locationType" : "UriLocation", + "uri" : "https://www.encodeproject.org/files/ENCFF773RLK/@@download/ENCFF773RLK.bigBed" + } + } }, { - "name" : "chd-7", + "category" : [ + "modERN", + "young adult" + ], "assemblyNames" : [ "c_elegans_PRJNA13758" ], + "trackId" : "c_elegans_PRJNA13758_chd-7-ENCFF814XNV", "displays" : [ { + "displayId" : "chd-7-ENCFF814XNV-LinearBasicDisplay", "renderer" : { + "height" : 6, "type" : "SvgFeatureRenderer", - "color1" : "blue", - "height" : 6 + "color1" : "blue" }, - "type" : "LinearBasicDisplay", - "displayId" : "chd-7-ENCFF814XNV-LinearBasicDisplay" + "type" : "LinearBasicDisplay" } ], - "category" : [ - "modERN", - "young adult" - ], - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for chd-7 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF814XNV/ and for more information on this chd-7 experiment, see https://www.encodeproject.org/experiments/ENCSR010MNU/.", - "trackId" : "c_elegans_PRJNA13758_chd-7-ENCFF814XNV", "adapter" : { - "type" : "BigBedAdapter", "bigBedLocation" : { "uri" : "https://www.encodeproject.org/files/ENCFF814XNV/@@download/ENCFF814XNV.bigBed", "locationType" : "UriLocation" - } + }, + "type" : "BigBedAdapter" }, - "type" : "FeatureTrack" + "type" : "FeatureTrack", + "name" : "chd-7", + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for chd-7 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF814XNV/ and for more information on this chd-7 experiment, see https://www.encodeproject.org/experiments/ENCSR010MNU/." }, { - "name" : "mes-4", - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], "displays" : [ { "displayId" : "mes-4-ENCFF048AAE-LinearBasicDisplay", - "type" : "LinearBasicDisplay", "renderer" : { "height" : 6, - "color1" : "blue", - "type" : "SvgFeatureRenderer" - } + "type" : "SvgFeatureRenderer", + "color1" : "blue" + }, + "type" : "LinearBasicDisplay" } ], + "trackId" : "c_elegans_PRJNA13758_mes-4-ENCFF048AAE", "category" : [ "modERN", "young adult" ], + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for mes-4 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF048AAE/ and for more information on this mes-4 experiment, see https://www.encodeproject.org/experiments/ENCSR665UXV/.", - "trackId" : "c_elegans_PRJNA13758_mes-4-ENCFF048AAE", + "name" : "mes-4", "adapter" : { "bigBedLocation" : { - "uri" : "https://www.encodeproject.org/files/ENCFF048AAE/@@download/ENCFF048AAE.bigBed", - "locationType" : "UriLocation" + "locationType" : "UriLocation", + "uri" : "https://www.encodeproject.org/files/ENCFF048AAE/@@download/ENCFF048AAE.bigBed" }, "type" : "BigBedAdapter" }, "type" : "FeatureTrack" }, { - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for C08G9.2 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF215SBJ/ and for more information on this C08G9.2 experiment, see https://www.encodeproject.org/experiments/ENCSR101QFW/.", "name" : "C08G9.2", + "adapter" : { + "type" : "BigBedAdapter", + "bigBedLocation" : { + "locationType" : "UriLocation", + "uri" : "https://www.encodeproject.org/files/ENCFF215SBJ/@@download/ENCFF215SBJ.bigBed" + } + }, "type" : "FeatureTrack", + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for C08G9.2 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF215SBJ/ and for more information on this C08G9.2 experiment, see https://www.encodeproject.org/experiments/ENCSR101QFW/.", + "trackId" : "c_elegans_PRJNA13758_C08G9.2-ENCFF215SBJ", "category" : [ "modERN", "late embryonic" ], - "adapter" : { - "bigBedLocation" : { - "uri" : "https://www.encodeproject.org/files/ENCFF215SBJ/@@download/ENCFF215SBJ.bigBed", - "locationType" : "UriLocation" - }, - "type" : "BigBedAdapter" - }, - "trackId" : "c_elegans_PRJNA13758_C08G9.2-ENCFF215SBJ", + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], "displays" : [ { "displayId" : "C08G9.2-ENCFF215SBJ-LinearBasicDisplay", - "type" : "LinearBasicDisplay", "renderer" : { - "color1" : "blue", + "height" : 6, "type" : "SvgFeatureRenderer", - "height" : 6 - } + "color1" : "blue" + }, + "type" : "LinearBasicDisplay" } ] }, { + "trackId" : "c_elegans_PRJNA13758_ceh-36-ENCFF524NXN", + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], + "category" : [ + "modERN", + "early embryonic" + ], "displays" : [ { "renderer" : { - "height" : 6, + "color1" : "blue", "type" : "SvgFeatureRenderer", - "color1" : "blue" + "height" : 6 }, "type" : "LinearBasicDisplay", "displayId" : "ceh-36-ENCFF524NXN-LinearBasicDisplay" } ], - "category" : [ - "modERN", - "early embryonic" - ], - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], "name" : "ceh-36", - "trackId" : "c_elegans_PRJNA13758_ceh-36-ENCFF524NXN", - "type" : "FeatureTrack", "adapter" : { "type" : "BigBedAdapter", "bigBedLocation" : { @@ -44229,23 +43668,18 @@ "uri" : "https://www.encodeproject.org/files/ENCFF524NXN/@@download/ENCFF524NXN.bigBed" } }, + "type" : "FeatureTrack", "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for ceh-36 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF524NXN/ and for more information on this ceh-36 experiment, see https://www.encodeproject.org/experiments/ENCSR002FCO/." }, { - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for hlh-12 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF845OMA/ and for more information on this hlh-12 experiment, see https://www.encodeproject.org/experiments/ENCSR292NVQ/.", - "trackId" : "c_elegans_PRJNA13758_hlh-12-ENCFF845OMA", - "adapter" : { - "type" : "BigBedAdapter", - "bigBedLocation" : { - "locationType" : "UriLocation", - "uri" : "https://www.encodeproject.org/files/ENCFF845OMA/@@download/ENCFF845OMA.bigBed" - } - }, - "type" : "FeatureTrack", - "name" : "hlh-12", "assemblyNames" : [ "c_elegans_PRJNA13758" ], + "category" : [ + "modERN", + "young adult" + ], + "trackId" : "c_elegans_PRJNA13758_hlh-12-ENCFF845OMA", "displays" : [ { "type" : "LinearBasicDisplay", @@ -44257,47 +43691,67 @@ "displayId" : "hlh-12-ENCFF845OMA-LinearBasicDisplay" } ], - "category" : [ - "modERN", - "young adult" - ] + "type" : "FeatureTrack", + "adapter" : { + "type" : "BigBedAdapter", + "bigBedLocation" : { + "locationType" : "UriLocation", + "uri" : "https://www.encodeproject.org/files/ENCFF845OMA/@@download/ENCFF845OMA.bigBed" + } + }, + "name" : "hlh-12", + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for hlh-12 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF845OMA/ and for more information on this hlh-12 experiment, see https://www.encodeproject.org/experiments/ENCSR292NVQ/." }, { + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], "category" : [ "modERN", "mixed stage (embryonic)" ], + "trackId" : "c_elegans_PRJNA13758_unc-120-ENCFF370PQI", "displays" : [ { + "displayId" : "unc-120-ENCFF370PQI-LinearBasicDisplay", "type" : "LinearBasicDisplay", "renderer" : { + "height" : 6, "color1" : "blue", - "type" : "SvgFeatureRenderer", - "height" : 6 - }, - "displayId" : "unc-120-ENCFF370PQI-LinearBasicDisplay" + "type" : "SvgFeatureRenderer" + } } ], - "name" : "unc-120", - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], "adapter" : { + "type" : "BigBedAdapter", "bigBedLocation" : { "locationType" : "UriLocation", "uri" : "https://www.encodeproject.org/files/ENCFF370PQI/@@download/ENCFF370PQI.bigBed" - }, - "type" : "BigBedAdapter" + } }, "type" : "FeatureTrack", - "trackId" : "c_elegans_PRJNA13758_unc-120-ENCFF370PQI", + "name" : "unc-120", "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for unc-120 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF370PQI/ and for more information on this unc-120 experiment, see https://www.encodeproject.org/experiments/ENCSR456GSL/." }, { + "type" : "FeatureTrack", + "adapter" : { + "type" : "BigBedAdapter", + "bigBedLocation" : { + "locationType" : "UriLocation", + "uri" : "https://www.encodeproject.org/files/ENCFF558HLP/@@download/ENCFF558HLP.bigBed" + } + }, + "name" : "hmbx-1", + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for hmbx-1 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF558HLP/ and for more information on this hmbx-1 experiment, see https://www.encodeproject.org/experiments/ENCSR889PUP/.", "category" : [ "modERN", "early embryonic" ], + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], + "trackId" : "c_elegans_PRJNA13758_hmbx-1-ENCFF558HLP", "displays" : [ { "displayId" : "hmbx-1-ENCFF558HLP-LinearBasicDisplay", @@ -44308,161 +43762,178 @@ "type" : "SvgFeatureRenderer" } } - ], - "name" : "hmbx-1", - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], + ] + }, + { + "name" : "pop-1", "adapter" : { "bigBedLocation" : { "locationType" : "UriLocation", - "uri" : "https://www.encodeproject.org/files/ENCFF558HLP/@@download/ENCFF558HLP.bigBed" + "uri" : "https://www.encodeproject.org/files/ENCFF939TKO/@@download/ENCFF939TKO.bigBed" }, "type" : "BigBedAdapter" }, "type" : "FeatureTrack", - "trackId" : "c_elegans_PRJNA13758_hmbx-1-ENCFF558HLP", - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. 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This track shows the best unique location for each cDNA.", + "category" : [ + "Genes", + "Supporting Evidence" + ], "assemblyNames" : [ "b_malayi_PRJNA10729" ], - "description" : "Matches to WormBase C. briggsae proteins, aligned with BLASTX (nucleotide to protein, via six-frame translation).", "adapter" : { "rootUrlTemplate" : { "locationType" : "UriLocation", - "uri" : "https://s3.amazonaws.com/agrjbrowse/MOD-jbrowses/WormBase/WS294/b_malayi_PRJNA10729/tracks/C. briggsae proteins/{refseq}/trackData.jsonz" + "uri" : "https://s3.amazonaws.com/agrjbrowse/MOD-jbrowses/WormBase/WS295/b_malayi_PRJNA10729/tracks/mRNAs_ncRNAs (best)/{refseq}/trackData.jsonz" }, "type" : "NCListAdapter" }, + "formatDetails" : { + "feature" : "jexl:{ JBrowse1: ''+feature.name+''}" + }, + "trackId" : "b_malayi_PRJNA10729_mrnas/ncrnas_(best)", "displays" : [ { - "mouseover" : "jexl:get(feature,'clone')", + "type" : "LinearBasicDisplay", "renderer" : { - "color1" : "orange", - "showLabels" : false, - "height" : 4, - "type" : "SvgFeatureRenderer" + "color1" : "jexl:startsWith(get(feature,'source'),'BLAT_mRNA_')==true?'yellow':'gray'", + "type" : "SvgFeatureRenderer", + "height" : 6, + "outline" : "black" }, - "displayId" : "C_briggsae_proteins-b_malayi_PRJNA10729-LinearBasicDisplay", - "type" : "LinearBasicDisplay" + "displayId" : "mrnas/ncrnas_(best)-b_malayi_PRJNA10729-LinearBasicDisplay" } ], - "category" : [ - "Sequence Similarity", - "Proteins" - ], "type" : "FeatureTrack" }, { "type" : "FeatureTrack", - "category" : [ - "Expression" - ], - "adapter" : { - "type" : "NCListAdapter", - "rootUrlTemplate" : { - "uri" : "https://s3.amazonaws.com/agrjbrowse/MOD-jbrowses/WormBase/WS294/b_malayi_PRJNA10729/tracks/RNASeq Asymmetries/{refseq}/trackData.jsonz", - "locationType" : "UriLocation" - } - }, "displays" : [ { - "mouseover" : "jexl:'Score: '+get(feature,'score')", + "displayId" : "yacs,_fosmids,_&_cosmids-b_malayi_PRJNA10729-LinearBasicDisplay", + "type" : "LinearBasicDisplay", "renderer" : { - "height" : 24, - "color1" : "jexl:get(feature,'source')=='RNASeq_R_asymmetry'?'red': get(feature,'source')=='RNASeq_F_asymmetry'?'green':'black'", - "showLabels" : false, - "displayMode" : "collapse", - "type" : "SvgFeatureRenderer" - }, - "displayId" : "rnaseq_asymmetries-b_malayi_PRJNA10729-LinearBasicDisplay", - "type" : "LinearBasicDisplay" + "color1" : "black", + "type" : "SvgFeatureRenderer", + "height" : 3 + } } ], - "description" : "Red boxes indicate regions where there are more than 2 times as many forward sense RNASeq reads aligned to the genome as reverse sense reads. This asymmetrical signal has been found empirically to be a sensitive marker for the ends of transcripts. Green boxes indicate regions where there are more than 2 times as many reverse sense RNASeq reads aligned to the genome as forward sense reads. This asymmetrical signal has been found empirically to be sensitive marker for the ends of transcripts. 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The Vancouver fosmids can be ordered directly from GeneService.", + "name" : "YACs, Fosmids, & Cosmids", + "category" : [ + "Reagents" + ] }, { - "assemblyNames" : [ - "b_malayi_PRJNA10729" - ], - "trackId" : "b_malayi_PRJNA10729_S_ratti_proteins", - "name" : "S. ratti proteins", - "category" : [ - "Sequence Similarity", - "Proteins" - ], - "type" : "FeatureTrack", "displays" : [ { - "mouseover" : "jexl:get(feature,'clone')", + "type" : "LinearBasicDisplay", "renderer" : { "type" : "SvgFeatureRenderer", - "color1" : "orange", - "showLabels" : false, - "height" : 4 + "color1" : "jexl:get(feature,'strand')>0?'violet':'turquoise'", + "labels" : { + "description" : "jexl:get(feature,'type')" + } }, - "displayId" : "S_ratti_proteins-b_malayi_PRJNA10729-LinearBasicDisplay", - "type" : "LinearBasicDisplay" + "displayId" : "gene_models_(historical)-b_malayi_PRJNA10729-LinearBasicDisplay" } ], + "trackId" : "b_malayi_PRJNA10729_gene_models_(historical)", "adapter" : { - "type" : "NCListAdapter", "rootUrlTemplate" : { - 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"Genome Structure", - "Repeats" - ], - "type" : "FeatureTrack", - "name" : "Low complextity region (Dust)", - "assemblyNames" : [ - "b_malayi_PRJNA10729" + "Sequence Similarity", + "Proteins" ], - "trackId" : "b_malayi_PRJNA10729_low_complextity_region_(dust)" + "type" : "FeatureTrack" }, { - "trackId" : "non-c._elegans_isoseq_collection_(best)-b_malayi_PRJNA10729", + "adapter" : { + "rootUrlTemplate" : { + "locationType" : "UriLocation", + "uri" : "https://s3.amazonaws.com/agrjbrowse/MOD-jbrowses/WormBase/WS295/b_malayi_PRJNA10729/tracks/Other UniProt proteins/{refseq}/trackData.jsonz" + }, + "type" : "NCListAdapter" + }, "assemblyNames" : [ "b_malayi_PRJNA10729" ], - "name" : "Non-C. elegans Isoseq collection (best)", - "type" : "FeatureTrack", + "trackId" : "b_malayi_PRJNA10729_other_uniprot_proteins", + "name" : "Other UniProt proteins", + "description" : "Matches to proteins from a slimmed-down version of UniProt (with proteins from WormBase core nematodes, human, fly and yeast removed), aligned with BLASTX (nucleotide to protein, via six-frame translation).", "category" : [ "Sequence Similarity", - 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This track shows the best location for each IsoSeqsequence." + "type" : "FeatureTrack" }, { - "type" : "FeatureTrack", "category" : [ "Expression" ], + "description" : "These are introns formed by aligned RNASeq reads spanning a region of the genome. Alignments of short read sequences from all available RNASeq projects were used. The number of reads spanning the introns is indicated by the thickness of the display.", + "name" : "RNASeq introns", + "trackId" : "b_malayi_PRJNA10729_rnaseq_introns", "adapter" : { + "type" : "NCListAdapter", "rootUrlTemplate" : { "locationType" : "UriLocation", - "uri" : "https://s3.amazonaws.com/agrjbrowse/MOD-jbrowses/WormBase/WS294/b_malayi_PRJNA10729/tracks/RNASeq/{refseq}/trackData.jsonz" - }, - "type" : "NCListAdapter" + "uri" : "https://s3.amazonaws.com/agrjbrowse/MOD-jbrowses/WormBase/WS295/b_malayi_PRJNA10729/tracks/RNASeq introns/{refseq}/trackData.jsonz" + } }, + "assemblyNames" : [ + "b_malayi_PRJNA10729" + ], "displays" : [ { + "displayId" : "rnaseq_introns-b_malayi_PRJNA10729-LinearBasicDisplay", "type" : "LinearBasicDisplay", - "displayId" : "rnaseq-b_malayi_PRJNA10729-LinearBasicDisplay", + "mouseover" : "jexl:get(feature,'score')+' reads'", "renderer" : { + "height" : "jexl:get(feature,'score')>100?50:get(feature,'score')<8?4:floor(get(feature,'score')/2)", "showLabels" : false, - "showDescriptions" : false, - "color1" : "black", - "height" : "jexl:get(feature,'score')>100?50:floor(get(feature,'score')/2)>4?floor(get(feature,'score')/2):4", + "color1" : "green", "type" : "SvgFeatureRenderer", - "displayMode" : "collapse" - }, - "mouseover" : "jexl:'Score: '+get(feature,'score')" + "showDescriptions" : false + } } ], - "description" : "These boxes indicate alignments of short read sequences from all available RNASeq projects. The number of reads has been normalised by averaging over the number of libraries. The height of all boxes indicates the relative score of the feature.", - "trackId" : "b_malayi_PRJNA10729_rnaseq", - "assemblyNames" : [ - "b_malayi_PRJNA10729" - ], - "name" : "RNASeq" + "type" : "FeatureTrack" }, { "type" : "FeatureTrack", - "category" : [ - "Sequence Similarity", - "Proteins" - ], "displays" : [ { + "mouseover" : "jexl:get(feature,'score')+' reads'", "type" : "LinearBasicDisplay", - "displayId" : "P_pacificus_proteins-b_malayi_PRJNA10729-LinearBasicDisplay", "renderer" : { "type" : "SvgFeatureRenderer", - "color1" : "orange", + "color1" : "jexl:get(feature,'score')>20000?(get(feature,'strand')>0?'#730073':'#007373'):get(feature,'strand')>0?'#'+hex(round(255-(140*(get(feature,'score')/20000))))+'00'+hex(round(255-(140*(get(feature,'score')/20000)))):'#00'+hex(round(255-(140*(get(feature,'score')/20000))))+hex(round(255-(140*(get(feature,'score')/20000))))", "showLabels" : false, - "height" : 4 + "showDescriptions" : false }, - "mouseover" : "jexl:get(feature,'clone')" + "displayId" : "rnaseq_splice_junctions_(common)-b_malayi_PRJNA10729-LinearBasicDisplay" } ], + "category" : [ + "Expression" + ], + "description" : "These are introns formed by aligned RNASeq reads spanning a region of the genome. Alignments of short read sequences from all available RNASeq projects were used. These junctions are considered 'common' in that there are more than 500 reads confirming their existence. The number of reads spanning the introns is indicated by the darkness of the color (shades of cyan for reverse, shades of violet for forward). 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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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For more information, see modENCODE's track detail page

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Data for nhr-48 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF066GNC/ and for more information on this nhr-48 experiment, see https://www.encodeproject.org/experiments/ENCSR176TET/.", - "type" : "FeatureTrack", - "category" : [ - "modERN", - "L4 larva" ] }, { - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for snpc-1.1 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF381NRD/ and for more information on this snpc-1.1 experiment, see https://www.encodeproject.org/experiments/ENCSR032CWX/.", - "adapter" : { - "bigBedLocation" : { - "uri" : "https://www.encodeproject.org/files/ENCFF381NRD/@@download/ENCFF381NRD.bigBed", - "locationType" : "UriLocation" - }, - "type" : "BigBedAdapter" - }, + "type" : "FeatureTrack", "displays" : [ { + "displayId" : "snpc-1.1-ENCFF381NRD-LinearBasicDisplay", + "type" : "LinearBasicDisplay", "renderer" : { - "height" : 6, + "type" : "SvgFeatureRenderer", "color1" : "blue", - "type" : "SvgFeatureRenderer" - }, - "type" : "LinearBasicDisplay", - "displayId" : "snpc-1.1-ENCFF381NRD-LinearBasicDisplay" + "height" : 6 + } } ], - "type" : "FeatureTrack", "category" : [ "modERN", "young adult" ], + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for snpc-1.1 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF381NRD/ and for more information on this snpc-1.1 experiment, see https://www.encodeproject.org/experiments/ENCSR032CWX/.", "name" : "snpc-1.1", "trackId" : "c_elegans_PRJNA13758_snpc-1.1-ENCFF381NRD", "assemblyNames" : [ "c_elegans_PRJNA13758" - ] + ], + "adapter" : { + "bigBedLocation" : { + "uri" : "https://www.encodeproject.org/files/ENCFF381NRD/@@download/ENCFF381NRD.bigBed", + "locationType" : "UriLocation" + }, + "type" : "BigBedAdapter" + } }, { - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], - "trackId" : "c_elegans_PRJNA13758_sdc-2-ENCFF005ETH", - "name" : "sdc-2", "type" : "FeatureTrack", - "category" : [ - "modERN", - "late embryonic" - ], "displays" : [ { - "type" : "LinearBasicDisplay", "displayId" : "sdc-2-ENCFF005ETH-LinearBasicDisplay", + "type" : "LinearBasicDisplay", "renderer" : { "type" : "SvgFeatureRenderer", "color1" : "blue", @@ -31803,47 +31933,62 @@ } } ], + "category" : [ + "modERN", + "late embryonic" + ], + "name" : "sdc-2", + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for sdc-2 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF005ETH/ and for more information on this sdc-2 experiment, see https://www.encodeproject.org/experiments/ENCSR438PSB/.", + "trackId" : "c_elegans_PRJNA13758_sdc-2-ENCFF005ETH", "adapter" : { - "type" : "BigBedAdapter", "bigBedLocation" : { - "uri" : "https://www.encodeproject.org/files/ENCFF005ETH/@@download/ENCFF005ETH.bigBed", - "locationType" : "UriLocation" - } + "locationType" : "UriLocation", + "uri" : "https://www.encodeproject.org/files/ENCFF005ETH/@@download/ENCFF005ETH.bigBed" + }, + "type" : "BigBedAdapter" }, - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for sdc-2 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF005ETH/ and for more information on this sdc-2 experiment, see https://www.encodeproject.org/experiments/ENCSR438PSB/." + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ] }, { - "type" : "FeatureTrack", "category" : [ "modERN", "late embryonic" ], "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for ref-2 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF320ZRR/ and for more information on this ref-2 experiment, see https://www.encodeproject.org/experiments/ENCSR320EEP/.", + "name" : "ref-2", + "trackId" : "c_elegans_PRJNA13758_ref-2-ENCFF320ZRR", "adapter" : { - "type" : "BigBedAdapter", "bigBedLocation" : { "uri" : "https://www.encodeproject.org/files/ENCFF320ZRR/@@download/ENCFF320ZRR.bigBed", "locationType" : "UriLocation" - } + }, + "type" : "BigBedAdapter" }, + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], "displays" : [ { - "type" : "LinearBasicDisplay", - "displayId" : "ref-2-ENCFF320ZRR-LinearBasicDisplay", "renderer" : { - "type" : "SvgFeatureRenderer", "color1" : "blue", + "type" : "SvgFeatureRenderer", "height" : 6 - } + }, + "type" : "LinearBasicDisplay", + "displayId" : "ref-2-ENCFF320ZRR-LinearBasicDisplay" } ], - "trackId" : "c_elegans_PRJNA13758_ref-2-ENCFF320ZRR", - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], - "name" : "ref-2" + "type" : "FeatureTrack" }, { + "name" : "nhr-179", + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for nhr-179 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF697CAP/ and for more information on this nhr-179 experiment, see https://www.encodeproject.org/experiments/ENCSR710GXZ/.", + "category" : [ + "modERN", + "young adult" + ], "adapter" : { "bigBedLocation" : { "locationType" : "UriLocation", @@ -31851,36 +31996,24 @@ }, "type" : "BigBedAdapter" }, + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], + "trackId" : "c_elegans_PRJNA13758_nhr-179-ENCFF697CAP", "displays" : [ { + "displayId" : "nhr-179-ENCFF697CAP-LinearBasicDisplay", "renderer" : { - "height" : 6, + "type" : "SvgFeatureRenderer", "color1" : "blue", - "type" : "SvgFeatureRenderer" + "height" : 6 }, - "type" : "LinearBasicDisplay", - "displayId" : "nhr-179-ENCFF697CAP-LinearBasicDisplay" + "type" : "LinearBasicDisplay" } ], - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for nhr-179 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF697CAP/ and for more information on this nhr-179 experiment, see https://www.encodeproject.org/experiments/ENCSR710GXZ/.", - "type" : "FeatureTrack", - "category" : [ - "modERN", - "young adult" - ], - "name" : "nhr-179", - "trackId" : "c_elegans_PRJNA13758_nhr-179-ENCFF697CAP", - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ] + "type" : "FeatureTrack" }, { - "name" : "syd-9", - "trackId" : "c_elegans_PRJNA13758_syd-9-ENCFF058IGA", - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for syd-9 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF058IGA/ and for more information on this syd-9 experiment, see https://www.encodeproject.org/experiments/ENCSR447EUI/.", "adapter" : { "type" : "BigBedAdapter", "bigBedLocation" : { @@ -31888,30 +32021,37 @@ "locationType" : "UriLocation" } }, + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], + "trackId" : "c_elegans_PRJNA13758_syd-9-ENCFF058IGA", + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for syd-9 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF058IGA/ and for more information on this syd-9 experiment, see https://www.encodeproject.org/experiments/ENCSR447EUI/.", + "name" : "syd-9", + "category" : [ + "modERN", + "late embryonic" + ], "displays" : [ { "displayId" : "syd-9-ENCFF058IGA-LinearBasicDisplay", - "type" : "LinearBasicDisplay", "renderer" : { - "color1" : "blue", "height" : 6, + "color1" : "blue", "type" : "SvgFeatureRenderer" - } + }, + "type" : "LinearBasicDisplay" } ], - "category" : [ - "modERN", - "late embryonic" - ], "type" : "FeatureTrack" }, { + "type" : "FeatureTrack", + "name" : "hrde-1", + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for hrde-1 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF986COB/ and for more information on this hrde-1 experiment, see https://www.encodeproject.org/experiments/ENCSR548OPZ/.", "category" : [ "modERN", "young adult" ], - "type" : "FeatureTrack", - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for hrde-1 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF986COB/ and for more information on this hrde-1 experiment, see https://www.encodeproject.org/experiments/ENCSR548OPZ/.", "adapter" : { "bigBedLocation" : { "locationType" : "UriLocation", @@ -31919,226 +32059,230 @@ }, "type" : "BigBedAdapter" }, - "displays" : [ - { - "type" : "LinearBasicDisplay", - "displayId" : "hrde-1-ENCFF986COB-LinearBasicDisplay", - "renderer" : { - "height" : 6, - "color1" : "blue", - "type" : "SvgFeatureRenderer" - } - } - ], - "trackId" : "c_elegans_PRJNA13758_hrde-1-ENCFF986COB", "assemblyNames" : [ "c_elegans_PRJNA13758" ], - "name" : "hrde-1" - }, - { - "category" : [ - "modERN", - "early embryonic" - ], - "type" : "FeatureTrack", - "adapter" : { - "type" : "BigBedAdapter", - "bigBedLocation" : { - "uri" : "https://www.encodeproject.org/files/ENCFF092GJQ/@@download/ENCFF092GJQ.bigBed", - "locationType" : "UriLocation" - } - }, + "trackId" : "c_elegans_PRJNA13758_hrde-1-ENCFF986COB", "displays" : [ { "renderer" : { - "color1" : "blue", "height" : 6, + "color1" : "blue", "type" : "SvgFeatureRenderer" }, "type" : "LinearBasicDisplay", - "displayId" : "aly-1-ENCFF092GJQ-LinearBasicDisplay" + "displayId" : "hrde-1-ENCFF986COB-LinearBasicDisplay" } - ], - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for aly-1 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF092GJQ/ and for more information on this aly-1 experiment, see https://www.encodeproject.org/experiments/ENCSR836LVI/.", + ] + }, + { "trackId" : "c_elegans_PRJNA13758_aly-1-ENCFF092GJQ", "assemblyNames" : [ "c_elegans_PRJNA13758" ], - "name" : "aly-1" - }, - { - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for elt-4 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF118UUK/ and for more information on this elt-4 experiment, see https://www.encodeproject.org/experiments/ENCSR714ZDK/.", "adapter" : { "bigBedLocation" : { "locationType" : "UriLocation", - "uri" : "https://www.encodeproject.org/files/ENCFF118UUK/@@download/ENCFF118UUK.bigBed" + "uri" : "https://www.encodeproject.org/files/ENCFF092GJQ/@@download/ENCFF092GJQ.bigBed" }, "type" : "BigBedAdapter" }, + "category" : [ + "modERN", + "early embryonic" + ], + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for aly-1 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF092GJQ/ and for more information on this aly-1 experiment, see https://www.encodeproject.org/experiments/ENCSR836LVI/.", + "name" : "aly-1", "displays" : [ { - "displayId" : "elt-4-ENCFF118UUK-LinearBasicDisplay", - "type" : "LinearBasicDisplay", + "displayId" : "aly-1-ENCFF092GJQ-LinearBasicDisplay", "renderer" : { + "type" : "SvgFeatureRenderer", "color1" : "blue", - "height" : 6, - "type" : "SvgFeatureRenderer" - } + "height" : 6 + }, + "type" : "LinearBasicDisplay" } ], + "type" : "FeatureTrack" + }, + { "type" : "FeatureTrack", + "name" : "elt-4", + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for elt-4 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF118UUK/ and for more information on this elt-4 experiment, see https://www.encodeproject.org/experiments/ENCSR714ZDK/.", "category" : [ "modERN", "late embryonic" ], - "name" : "elt-4", - "trackId" : "c_elegans_PRJNA13758_elt-4-ENCFF118UUK", - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ] - }, - { - "name" : "fax-1", - "trackId" : "c_elegans_PRJNA13758_fax-1-ENCFF333ESJ", "assemblyNames" : [ "c_elegans_PRJNA13758" ], "adapter" : { "type" : "BigBedAdapter", "bigBedLocation" : { - "uri" : "https://www.encodeproject.org/files/ENCFF333ESJ/@@download/ENCFF333ESJ.bigBed", + "uri" : "https://www.encodeproject.org/files/ENCFF118UUK/@@download/ENCFF118UUK.bigBed", "locationType" : "UriLocation" } }, + "trackId" : "c_elegans_PRJNA13758_elt-4-ENCFF118UUK", + "displays" : [ + { + "displayId" : "elt-4-ENCFF118UUK-LinearBasicDisplay", + "renderer" : { + "height" : 6, + "color1" : "blue", + "type" : "SvgFeatureRenderer" + }, + "type" : "LinearBasicDisplay" + } + ] + }, + { + "type" : "FeatureTrack", "displays" : [ { - "displayId" : "fax-1-ENCFF333ESJ-LinearBasicDisplay", - "type" : "LinearBasicDisplay", "renderer" : { - "type" : "SvgFeatureRenderer", "color1" : "blue", + "type" : "SvgFeatureRenderer", "height" : 6 - } + }, + "type" : "LinearBasicDisplay", + "displayId" : "fax-1-ENCFF333ESJ-LinearBasicDisplay" } ], - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for fax-1 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF333ESJ/ and for more information on this fax-1 experiment, see https://www.encodeproject.org/experiments/ENCSR517JNQ/.", + "trackId" : "c_elegans_PRJNA13758_fax-1-ENCFF333ESJ", + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], + "adapter" : { + "bigBedLocation" : { + "locationType" : "UriLocation", + "uri" : "https://www.encodeproject.org/files/ENCFF333ESJ/@@download/ENCFF333ESJ.bigBed" + }, + "type" : "BigBedAdapter" + }, "category" : [ "modERN", "late embryonic" ], - "type" : "FeatureTrack" + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for fax-1 was generated at the Kevin White, UChicago lab. 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For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF214IKK/ and for more information on this xnd-1 experiment, see https://www.encodeproject.org/experiments/ENCSR327NRA/.", + "trackId" : "c_elegans_PRJNA13758_xnd-1-ENCFF214IKK", + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], "adapter" : { - "type" : "BigBedAdapter", "bigBedLocation" : { "locationType" : "UriLocation", "uri" : "https://www.encodeproject.org/files/ENCFF214IKK/@@download/ENCFF214IKK.bigBed" - } + }, + "type" : "BigBedAdapter" }, "displays" : [ { - "type" : "LinearBasicDisplay", "displayId" : "xnd-1-ENCFF214IKK-LinearBasicDisplay", + "type" : "LinearBasicDisplay", "renderer" : { - "color1" : "blue", "height" : 6, + "color1" : "blue", "type" : "SvgFeatureRenderer" } } ] }, { - "category" : [ - "modERN", - "young adult" - ], "type" : "FeatureTrack", - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for B0035.1 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF829GJL/ and for more information on this B0035.1 experiment, see https://www.encodeproject.org/experiments/ENCSR450GPA/.", - "adapter" : { - "type" : "BigBedAdapter", - "bigBedLocation" : { - "uri" : "https://www.encodeproject.org/files/ENCFF829GJL/@@download/ENCFF829GJL.bigBed", - "locationType" : "UriLocation" - } - }, "displays" : [ { + "displayId" : "B0035.1-ENCFF829GJL-LinearBasicDisplay", "renderer" : { "height" : 6, - "color1" : "blue", - "type" : "SvgFeatureRenderer" + "type" : "SvgFeatureRenderer", + "color1" : "blue" }, - "type" : "LinearBasicDisplay", - "displayId" : "B0035.1-ENCFF829GJL-LinearBasicDisplay" + "type" : "LinearBasicDisplay" } ], "trackId" : "c_elegans_PRJNA13758_B0035.1-ENCFF829GJL", "assemblyNames" : [ "c_elegans_PRJNA13758" ], + "adapter" : { + "bigBedLocation" : { + "locationType" : "UriLocation", + "uri" : "https://www.encodeproject.org/files/ENCFF829GJL/@@download/ENCFF829GJL.bigBed" + }, + "type" : "BigBedAdapter" + }, + "category" : [ + "modERN", + "young adult" + ], + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for B0035.1 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF829GJL/ and for more information on this B0035.1 experiment, see https://www.encodeproject.org/experiments/ENCSR450GPA/.", "name" : "B0035.1" }, { + "type" : "FeatureTrack", "assemblyNames" : [ "c_elegans_PRJNA13758" ], + "adapter" : { + "type" : "BigBedAdapter", + "bigBedLocation" : { + "uri" : "https://www.encodeproject.org/files/ENCFF270KYW/@@download/ENCFF270KYW.bigBed", + "locationType" : "UriLocation" + } + }, "trackId" : "c_elegans_PRJNA13758_nhr-232-ENCFF270KYW", "name" : "nhr-232", + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for nhr-232 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF270KYW/ and for more information on this nhr-232 experiment, see https://www.encodeproject.org/experiments/ENCSR182IGG/.", "category" : [ "modERN", "late embryonic" ], - "type" : "FeatureTrack", "displays" : [ { "renderer" : { - "color1" : "blue", "height" : 6, + "color1" : "blue", "type" : "SvgFeatureRenderer" }, - "displayId" : "nhr-232-ENCFF270KYW-LinearBasicDisplay", - "type" : "LinearBasicDisplay" - } - ], - "adapter" : { - "type" : "BigBedAdapter", - "bigBedLocation" : { - "uri" : "https://www.encodeproject.org/files/ENCFF270KYW/@@download/ENCFF270KYW.bigBed", - "locationType" : "UriLocation" + "type" : "LinearBasicDisplay", + "displayId" : "nhr-232-ENCFF270KYW-LinearBasicDisplay" } - }, - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for nhr-232 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF270KYW/ and for more information on this nhr-232 experiment, see https://www.encodeproject.org/experiments/ENCSR182IGG/." + ] }, { "type" : "FeatureTrack", - "category" : [ - "modERN", - "late embryonic" - ], "displays" : [ { - "type" : "LinearBasicDisplay", "displayId" : "ceh-2-ENCFF736OZW-LinearBasicDisplay", + "type" : "LinearBasicDisplay", "renderer" : { + "color1" : "blue", "type" : "SvgFeatureRenderer", - "height" : 6, - "color1" : "blue" + "height" : 6 } } ], + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for ceh-2 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF736OZW/ and for more information on this ceh-2 experiment, see https://www.encodeproject.org/experiments/ENCSR534TFA/.", + "name" : "ceh-2", + "category" : [ + "modERN", + "late embryonic" + ], + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], "adapter" : { "type" : "BigBedAdapter", "bigBedLocation" : { @@ -32146,92 +32290,89 @@ "uri" : "https://www.encodeproject.org/files/ENCFF736OZW/@@download/ENCFF736OZW.bigBed" } }, - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for ceh-2 was generated at the Kevin White, UChicago lab. 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For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF038IUP/ and for more information on this pag-3 experiment, see https://www.encodeproject.org/experiments/ENCSR680ZDH/.", + "trackId" : "c_elegans_PRJNA13758_pag-3-ENCFF038IUP", + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], "adapter" : { "bigBedLocation" : { - "uri" : "https://www.encodeproject.org/files/ENCFF545QMO/@@download/ENCFF545QMO.bigBed", + "uri" : "https://www.encodeproject.org/files/ENCFF038IUP/@@download/ENCFF038IUP.bigBed", "locationType" : "UriLocation" }, "type" : "BigBedAdapter" @@ -34840,95 +34948,119 @@ "displays" : [ { "type" : "LinearBasicDisplay", - "displayId" : "irx-1-ENCFF545QMO-LinearBasicDisplay", "renderer" : { "height" : 6, - "color1" : "blue", - "type" : "SvgFeatureRenderer" - } + "type" : "SvgFeatureRenderer", + "color1" : "blue" + }, + "displayId" : "pag-3-ENCFF038IUP-LinearBasicDisplay" } ], - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. 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Data for che-1 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF482GOQ/ and for more information on this che-1 experiment, see https://www.encodeproject.org/experiments/ENCSR598GFQ/.", + "name" : "che-1", "category" : [ "modERN", - "young adult" - ], - "type" : "FeatureTrack" + "late embryonic" + ] }, { + "type" : "FeatureTrack", "displays" : [ { + "type" : "LinearBasicDisplay", "renderer" : { - "type" : "SvgFeatureRenderer", "color1" : "blue", + "type" : "SvgFeatureRenderer", "height" : 6 }, - "displayId" : "che-1-ENCFF482GOQ-LinearBasicDisplay", - "type" : "LinearBasicDisplay" + "displayId" : "sdz-38-ENCFF052YIV-LinearBasicDisplay" } ], + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], "adapter" : { "type" : "BigBedAdapter", "bigBedLocation" : { - "uri" : "https://www.encodeproject.org/files/ENCFF482GOQ/@@download/ENCFF482GOQ.bigBed", - "locationType" : "UriLocation" + "locationType" : "UriLocation", + "uri" : "https://www.encodeproject.org/files/ENCFF052YIV/@@download/ENCFF052YIV.bigBed" } }, - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. 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For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF226OII/ and for more information on this mel-28 experiment, see https://www.encodeproject.org/experiments/ENCSR518VJU/.", + "name" : "mel-28", + "trackId" : "c_elegans_PRJNA13758_mel-28-ENCFF226OII", "adapter" : { - "type" : "BigBedAdapter", "bigBedLocation" : { "locationType" : "UriLocation", "uri" : "https://www.encodeproject.org/files/ENCFF226OII/@@download/ENCFF226OII.bigBed" - } + }, + "type" : "BigBedAdapter" }, + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], "displays" : [ { + "displayId" : "mel-28-ENCFF226OII-LinearBasicDisplay", "renderer" : { "type" : "SvgFeatureRenderer", - "height" : 6, - "color1" : "blue" + "color1" : "blue", + "height" : 6 }, - "displayId" : "mel-28-ENCFF226OII-LinearBasicDisplay", "type" : "LinearBasicDisplay" } - ], - "type" : "FeatureTrack", - "category" : [ - "modERN", - "young adult" ] }, { - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. 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Data for chd-7 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF814XNV/ and for more information on this chd-7 experiment, see https://www.encodeproject.org/experiments/ENCSR010MNU/.", "adapter" : { - "type" : "BigBedAdapter", "bigBedLocation" : { "locationType" : "UriLocation", "uri" : "https://www.encodeproject.org/files/ENCFF814XNV/@@download/ENCFF814XNV.bigBed" - } + }, + "type" : "BigBedAdapter" }, + "trackId" : "c_elegans_PRJNA13758_chd-7-ENCFF814XNV", + "type" : "FeatureTrack" + }, + { "displays" : [ { - "displayId" : "chd-7-ENCFF814XNV-LinearBasicDisplay", + "displayId" : "mes-4-ENCFF048AAE-LinearBasicDisplay", "type" : "LinearBasicDisplay", "renderer" : { - "color1" : "blue", "height" : 6, + "color1" : "blue", "type" : "SvgFeatureRenderer" } } ], - "type" : "FeatureTrack", - "category" : [ - "modERN", - "young adult" - ] - }, - { - "name" : "mes-4", "trackId" : "c_elegans_PRJNA13758_mes-4-ENCFF048AAE", - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], "adapter" : { - "type" : "BigBedAdapter", "bigBedLocation" : { "uri" : "https://www.encodeproject.org/files/ENCFF048AAE/@@download/ENCFF048AAE.bigBed", "locationType" : "UriLocation" - } + }, + "type" : "BigBedAdapter" }, - "displays" : [ - { - "renderer" : { - "type" : "SvgFeatureRenderer", - "color1" : "blue", - "height" : 6 - }, - "displayId" : "mes-4-ENCFF048AAE-LinearBasicDisplay", - "type" : "LinearBasicDisplay" - } + "assemblyNames" : [ + "c_elegans_PRJNA13758" ], - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for mes-4 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF048AAE/ and for more information on this mes-4 experiment, see https://www.encodeproject.org/experiments/ENCSR665UXV/.", "category" : [ "modERN", "young adult" ], + "name" : "mes-4", + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for mes-4 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF048AAE/ and for more information on this mes-4 experiment, see https://www.encodeproject.org/experiments/ENCSR665UXV/.", "type" : "FeatureTrack" }, { @@ -35630,12 +35769,6 @@ "assemblyNames" : [ "c_elegans_PRJNA13758" ], - "name" : "C08G9.2", - "category" : [ - "modERN", - "late embryonic" - ], - "type" : "FeatureTrack", "adapter" : { "type" : "BigBedAdapter", "bigBedLocation" : { @@ -35643,92 +35776,97 @@ "locationType" : "UriLocation" } }, + "category" : [ + "modERN", + "late embryonic" + ], + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for C08G9.2 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF215SBJ/ and for more information on this C08G9.2 experiment, see https://www.encodeproject.org/experiments/ENCSR101QFW/.", + "name" : "C08G9.2", "displays" : [ { + "type" : "LinearBasicDisplay", "renderer" : { "type" : "SvgFeatureRenderer", - "height" : 6, - "color1" : "blue" + "color1" : "blue", + "height" : 6 }, - "displayId" : "C08G9.2-ENCFF215SBJ-LinearBasicDisplay", - "type" : "LinearBasicDisplay" + "displayId" : "C08G9.2-ENCFF215SBJ-LinearBasicDisplay" } ], - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for C08G9.2 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF215SBJ/ and for more information on this C08G9.2 experiment, see https://www.encodeproject.org/experiments/ENCSR101QFW/." + "type" : "FeatureTrack" }, { - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], - "trackId" : "c_elegans_PRJNA13758_ceh-36-ENCFF524NXN", - "name" : "ceh-36", - "category" : [ - "modERN", - "early embryonic" - ], "type" : "FeatureTrack", - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for ceh-36 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF524NXN/ and for more information on this ceh-36 experiment, see https://www.encodeproject.org/experiments/ENCSR002FCO/.", "displays" : [ { - "type" : "LinearBasicDisplay", "displayId" : "ceh-36-ENCFF524NXN-LinearBasicDisplay", "renderer" : { "type" : "SvgFeatureRenderer", "color1" : "blue", "height" : 6 - } + }, + "type" : "LinearBasicDisplay" } ], + "category" : [ + "modERN", + "early embryonic" + ], + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for ceh-36 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF524NXN/ and for more information on this ceh-36 experiment, see https://www.encodeproject.org/experiments/ENCSR002FCO/.", + "name" : "ceh-36", + "trackId" : "c_elegans_PRJNA13758_ceh-36-ENCFF524NXN", "adapter" : { - "type" : "BigBedAdapter", "bigBedLocation" : { - "locationType" : "UriLocation", - "uri" : "https://www.encodeproject.org/files/ENCFF524NXN/@@download/ENCFF524NXN.bigBed" - } - } + "uri" : "https://www.encodeproject.org/files/ENCFF524NXN/@@download/ENCFF524NXN.bigBed", + "locationType" : "UriLocation" + }, + "type" : "BigBedAdapter" + }, + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ] }, { + "trackId" : "c_elegans_PRJNA13758_hlh-12-ENCFF845OMA", + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], "adapter" : { - "type" : "BigBedAdapter", "bigBedLocation" : { - "locationType" : "UriLocation", - "uri" : "https://www.encodeproject.org/files/ENCFF845OMA/@@download/ENCFF845OMA.bigBed" - } + "uri" : "https://www.encodeproject.org/files/ENCFF845OMA/@@download/ENCFF845OMA.bigBed", + "locationType" : "UriLocation" + }, + "type" : "BigBedAdapter" }, - "displays" : [ - { - "renderer" : { - "type" : "SvgFeatureRenderer", - "height" : 6, - "color1" : "blue" - }, - "type" : "LinearBasicDisplay", - "displayId" : "hlh-12-ENCFF845OMA-LinearBasicDisplay" - } - ], - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for hlh-12 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF845OMA/ and for more information on this hlh-12 experiment, see https://www.encodeproject.org/experiments/ENCSR292NVQ/.", - "type" : "FeatureTrack", "category" : [ "modERN", "young adult" ], + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for hlh-12 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF845OMA/ and for more information on this hlh-12 experiment, see https://www.encodeproject.org/experiments/ENCSR292NVQ/.", "name" : "hlh-12", - "trackId" : "c_elegans_PRJNA13758_hlh-12-ENCFF845OMA", - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ] + "displays" : [ + { + "displayId" : "hlh-12-ENCFF845OMA-LinearBasicDisplay", + "type" : "LinearBasicDisplay", + "renderer" : { + "height" : 6, + "color1" : "blue", + "type" : "SvgFeatureRenderer" + } + } + ], + "type" : "FeatureTrack" }, { - "trackId" : "c_elegans_PRJNA13758_unc-120-ENCFF370PQI", - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for unc-120 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF370PQI/ and for more information on this unc-120 experiment, see https://www.encodeproject.org/experiments/ENCSR456GSL/.", "name" : "unc-120", "category" : [ "modERN", "mixed stage (embryonic)" ], - "type" : "FeatureTrack", + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], "adapter" : { "bigBedLocation" : { "uri" : "https://www.encodeproject.org/files/ENCFF370PQI/@@download/ENCFF370PQI.bigBed", @@ -35736,25 +35874,29 @@ }, "type" : "BigBedAdapter" }, + "trackId" : "c_elegans_PRJNA13758_unc-120-ENCFF370PQI", "displays" : [ { "renderer" : { - "type" : "SvgFeatureRenderer", + "height" : 6, "color1" : "blue", - "height" : 6 + "type" : "SvgFeatureRenderer" }, "type" : "LinearBasicDisplay", "displayId" : "unc-120-ENCFF370PQI-LinearBasicDisplay" } ], - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for unc-120 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF370PQI/ and for more information on this unc-120 experiment, see https://www.encodeproject.org/experiments/ENCSR456GSL/." + "type" : "FeatureTrack" }, { + "type" : "FeatureTrack", + "category" : [ + "modERN", + "early embryonic" + ], + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for hmbx-1 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF558HLP/ and for more information on this hmbx-1 experiment, see https://www.encodeproject.org/experiments/ENCSR889PUP/.", "name" : "hmbx-1", "trackId" : "c_elegans_PRJNA13758_hmbx-1-ENCFF558HLP", - "assemblyNames" : [ - "c_elegans_PRJNA13758" - ], "adapter" : { "type" : "BigBedAdapter", "bigBedLocation" : { @@ -35762,62 +35904,72 @@ "locationType" : "UriLocation" } }, + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ], "displays" : [ { - "type" : "LinearBasicDisplay", - "displayId" : "hmbx-1-ENCFF558HLP-LinearBasicDisplay", "renderer" : { "height" : 6, "color1" : "blue", "type" : "SvgFeatureRenderer" - } + }, + "type" : "LinearBasicDisplay", + "displayId" : "hmbx-1-ENCFF558HLP-LinearBasicDisplay" } - ], - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for hmbx-1 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF558HLP/ and for more information on this hmbx-1 experiment, see https://www.encodeproject.org/experiments/ENCSR889PUP/.", + ] + }, + { + "name" : "pop-1", + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for pop-1 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF939TKO/ and for more information on this pop-1 experiment, see https://www.encodeproject.org/experiments/ENCSR880RBB/.", "category" : [ "modERN", "early embryonic" ], - "type" : "FeatureTrack" - }, - { - "name" : "pop-1", - "trackId" : "c_elegans_PRJNA13758_pop-1-ENCFF939TKO", "assemblyNames" : [ "c_elegans_PRJNA13758" ], "adapter" : { - "type" : "BigBedAdapter", "bigBedLocation" : { "uri" : "https://www.encodeproject.org/files/ENCFF939TKO/@@download/ENCFF939TKO.bigBed", "locationType" : "UriLocation" - } + }, + "type" : "BigBedAdapter" }, + "trackId" : "c_elegans_PRJNA13758_pop-1-ENCFF939TKO", "displays" : [ { "renderer" : { - "type" : "SvgFeatureRenderer", "height" : 6, - "color1" : "blue" + "color1" : "blue", + "type" : "SvgFeatureRenderer" }, - "displayId" : "pop-1-ENCFF939TKO-LinearBasicDisplay", - "type" : "LinearBasicDisplay" + "type" : "LinearBasicDisplay", + "displayId" : "pop-1-ENCFF939TKO-LinearBasicDisplay" } ], - "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for pop-1 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF939TKO/ and for more information on this pop-1 experiment, see https://www.encodeproject.org/experiments/ENCSR880RBB/.", - "category" : [ - "modERN", - "early embryonic" - ], "type" : "FeatureTrack" }, { + "type" : "FeatureTrack", + "displays" : [ + { + "renderer" : { + "height" : 6, + "type" : "SvgFeatureRenderer", + "color1" : "blue" + }, + "type" : "LinearBasicDisplay", + "displayId" : "ceh-48-ENCFF784CKU-LinearBasicDisplay" + } + ], "category" : [ "modERN", "late embryonic" ], - "type" : "FeatureTrack", + "name" : "ceh-48", "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for ceh-48 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF784CKU/ and for more information on this ceh-48 experiment, see https://www.encodeproject.org/experiments/ENCSR844VCY/.", + "trackId" : "c_elegans_PRJNA13758_ceh-48-ENCFF784CKU", "adapter" : { "type" : "BigBedAdapter", "bigBedLocation" : { @@ -35825,55 +35977,57 @@ "locationType" : "UriLocation" } }, + "assemblyNames" : [ + "c_elegans_PRJNA13758" + ] + }, + { + "type" : "FeatureTrack", "displays" : [ { - "type" : "LinearBasicDisplay", - "displayId" : "ceh-48-ENCFF784CKU-LinearBasicDisplay", "renderer" : { - "height" : 6, + "type" : "SvgFeatureRenderer", "color1" : "blue", - "type" : "SvgFeatureRenderer" - } + "height" : 6 + }, + "type" : "LinearBasicDisplay", + "displayId" : "ceh-9-ENCFF590HHF-LinearBasicDisplay" } ], - "trackId" : "c_elegans_PRJNA13758_ceh-48-ENCFF784CKU", + "trackId" : "c_elegans_PRJNA13758_ceh-9-ENCFF590HHF", + "adapter" : { + "type" : "BigBedAdapter", + "bigBedLocation" : { + "uri" : "https://www.encodeproject.org/files/ENCFF590HHF/@@download/ENCFF590HHF.bigBed", + "locationType" : "UriLocation" + } + }, "assemblyNames" : [ "c_elegans_PRJNA13758" ], - "name" : "ceh-48" - }, - { "category" : [ "modERN", "late embryonic" ], - "type" : "FeatureTrack", "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. Data for ceh-9 was generated at the Kevin White, UChicago lab. For more information on the data specifically for this track, see https://www.encodeproject.org/files/ENCFF590HHF/ and for more information on this ceh-9 experiment, see https://www.encodeproject.org/experiments/ENCSR432MSI/.", - "adapter" : { - "type" : "BigBedAdapter", - "bigBedLocation" : { - "locationType" : "UriLocation", - "uri" : "https://www.encodeproject.org/files/ENCFF590HHF/@@download/ENCFF590HHF.bigBed" - } - }, + "name" : "ceh-9" + }, + { + "type" : "FeatureTrack", "displays" : [ { + "type" : "LinearBasicDisplay", "renderer" : { + "height" : 6, "type" : "SvgFeatureRenderer", - "color1" : "blue", - "height" : 6 + "color1" : "blue" }, - "displayId" : "ceh-9-ENCFF590HHF-LinearBasicDisplay", - "type" : "LinearBasicDisplay" + "displayId" : "T26A5.8-ENCFF928KWT-LinearBasicDisplay" } ], - "trackId" : "c_elegans_PRJNA13758_ceh-9-ENCFF590HHF", "assemblyNames" : [ "c_elegans_PRJNA13758" ], - "name" : "ceh-9" - }, - { "adapter" : { "bigBedLocation" : { "uri" : "https://www.encodeproject.org/files/ENCFF928KWT/@@download/ENCFF928KWT.bigBed", @@ -35881,62 +36035,66 @@ }, "type" : "BigBedAdapter" }, + "trackId" : "c_elegans_PRJNA13758_T26A5.8-ENCFF928KWT", + "description" : "Data from the modERN project hosted at the https://www.encodeproject.org/. 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