NAMESPACE

# Generated by roxygen2: do not edit by hand

export(MRNsurr)
export(NbClust)
export(brush_action)
export(changeColNames)
export(consensusCluster)
export(consensus_immunedeconvolute)
export(dge_DESeq)
export(dge_edgeR)
export(dge_limma)
export(drawHeatmap)
export(estimate_bestNumberofClusters)
export(filter_mutects)
export(filter_pindels)
export(getFill)
export(getGenes)
export(getGseaRes)
export(getHeatMapAnnotation)
export(getPthwy)
export(getVariables)
export(gsea)
export(multiCluster)
export(plotBoxPlot)
export(pplSetUp)
export(prepare_clean_RNA_sample_info_and_protein_expressions)
export(prepare_unsupervised_data)
export(reassignNA)
export(runExprPPL)
export(t_test2)
export(table_org)
export(unsupervised_analysis)
export(zscoreData)
import(ADAPTS)
import(ComplexHeatmap)
import(DESeq2)
import(DeconRNASeq)
import(EPIC)
import(NMF)
import(PCAtools)
import(RColorBrewer)
import(Rtsne)
import(apcluster)
import(dplyr)
import(ggplot2)
import(ggplotify)
import(goeveg)
import(gridExtra)
import(igraph)
import(kernlab)
import(ordinal)
import(pheatmap)
import(plotly)
import(plyranges)
import(rtracklayer)
import(statmod)
import(umap)
import(xCell)
importFrom(MCL,mcl)
importFrom(cluster,fanny)
importFrom(cluster,pam)
importFrom(cols4all,c4a)
importFrom(corto,ssgsea)
importFrom(dbscan,hdbscan)
importFrom(ggcorrplot,ggcorrplot)
importFrom(ggpubr,ggboxplot)
importFrom(graphics,par)
importFrom(kohonen,som)
importFrom(kohonen,somgrid)
importFrom(mclust,Mclust)
importFrom(mclust,adjustedRandIndex)
importFrom(mclust,mclustBIC)
importFrom(plotly,add_markers)
importFrom(plotly,plot_ly)
importFrom(skmeans,skmeans)
importFrom(stats,as.dist)
importFrom(stats,complete.cases)
importFrom(stats,cov)
importFrom(stats,cutree)
importFrom(stats,dist)
importFrom(stats,hclust)
importFrom(stats,kmeans)
importFrom(stats,lm)
importFrom(stats,median)
importFrom(stats,na.omit)
importFrom(stats,pf)
importFrom(stats,qqnorm)
importFrom(stats,quantile)
importFrom(stats,runif)
importFrom(stats,sd)
importFrom(stats,var)