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error when hisat2 mapping sort bam file #19

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hust-yyan opened this issue May 9, 2021 · 1 comment
Open

error when hisat2 mapping sort bam file #19

hust-yyan opened this issue May 9, 2021 · 1 comment

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@hust-yyan
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@hust-yyan
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hi
when i run circexplorer3 in raw fastq file, I encountered the following error
image
and this is my running code:
~/.conda/envs/yyan3.7/bin/clear_quant -1 $b1 -2 $b2 -g $ref
-i $hisat -j $hisat -G $gtf -o /data1/yyan_tmp/LUNG_CANCER/analysis/CircRNA/CLEAR_output
thanks!

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