Tn5 motif, hmm profile

[MWSchmid]

Hi there

I would be interested in the hmm profile of the Tn5 preference motif in Figure 2 of the paper. In case you have it still at hand, could you add it do the repository?

Many thanks and best regards,

Marc

P.S. We would like to use it to search whether we can find an over-representation of the motif in Cut and Tag peaks compared to ChIP-Seq peaks.

[kuangyuyen]

Hi Marc Thank you for taking an interest in our paper. I have forwarded your email to the first author (cc’d here) and he will get back to you shortly. Best regards Kuangyu Get Outlook for iOS<https://aka.ms/o0ukef>

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________________________________ From: Marc ***@***.***> Sent: Tuesday, April 9, 2024 8:05 PM To: YenLab/Tn5InsertPrefer ***@***.***> Cc: Subscribed ***@***.***> Subject: [YenLab/Tn5InsertPrefer] Tn5 motif, hmm profile (Discussion #2) Hi there I would be interested in the hmm profile of the Tn5 preference motif in Figure 2<https://academic.oup.com/view-large/figure/312269342/lqab094fig2.jpg> of the paper. In case you have it still at hand, could you add it do the repository? Many thanks and best regards, Marc P.S. We would like to use it to search whether we can find an over-representation of the motif in Cut and Tag peaks compared to ChIP-Seq peaks. — Reply to this email directly, view it on GitHub<#2>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/AANSEPTDZBN45FPFXISMDODY4PKPPAVCNFSM6AAAAABF6OAMH6VHI2DSMVQWIX3LMV43ERDJONRXK43TNFXW4OZWGQ4DENZUGM>. You are receiving this because you are subscribed to this thread.Message ID: ***@***.***>

[HouyuZhang]

Hi Marc,

All Tn5 motifs for 8 species in Figure 2 were uploaded to this repository in MEME format.

Best regards,
Houyu Zhang

[MWSchmid]

Hi Houyu

Thanks a lot for the motifs :)

Best regards,

Marc