From 430c4adcf6b1a0d6158dc478ccaf93763b668990 Mon Sep 17 00:00:00 2001 From: "Arian R. Jamasb" Date: Wed, 24 Jul 2024 16:10:32 +0200 Subject: [PATCH] docs: rename arg to newer arg in documentation notebooks #389 --- notebooks/ppi_graph.ipynb | 6 +++--- notebooks/residue_graphs.ipynb | 2 +- 2 files changed, 4 insertions(+), 4 deletions(-) diff --git a/notebooks/ppi_graph.ipynb b/notebooks/ppi_graph.ipynb index b4caa9fb..3e915326 100644 --- a/notebooks/ppi_graph.ipynb +++ b/notebooks/ppi_graph.ipynb @@ -1990,11 +1990,11 @@ "for n, d in g.nodes(data=True):\n", " try:\n", " fp = download_alphafold_structure(d['uniprot_ids'][0])[0]\n", - " pg = construct_graph(pg_config, pdb_path=fp)\n", - " \n", + " pg = construct_graph(pg_config, path=fp)\n", + "\n", " # Add protein graph as node feature\n", " d['protein_graph'] = pg\n", - " \n", + "\n", " # Plot\n", " ax = plot_protein_structure_graph(pg, label_node_ids=False, colour_nodes_by=\"residue_name\")\n", " ax.set_title(d[\"uniprot_ids\"][0])\n", diff --git a/notebooks/residue_graphs.ipynb b/notebooks/residue_graphs.ipynb index ff4f3486..656ba39e 100644 --- a/notebooks/residue_graphs.ipynb +++ b/notebooks/residue_graphs.ipynb @@ -273,7 +273,7 @@ "If you wish to use a local `.pdb` file, you can run:\n", "\n", "```python\n", - "g = construct_graph(config=config, pdb_path=\"../graphein/examples/pdbs/3eiy.pdb\")\n", + "g = construct_graph(config=config, path=\"../graphein/examples/pdbs/3eiy.pdb\")\n", "```" ] },