From 6d2f3d0c528f5ddb035a6f1d8a16324cbc26d889 Mon Sep 17 00:00:00 2001
From: Arian Jamasb <arian.jamasb@roche.com>
Date: Wed, 7 Feb 2024 15:54:50 +0100
Subject: [PATCH] switch CI to pip installs for torch, pyg and deps.

---
 .github/workflows/build.yaml | 10 ++++++----
 1 file changed, 6 insertions(+), 4 deletions(-)

diff --git a/.github/workflows/build.yaml b/.github/workflows/build.yaml
index b60e51d9..32d77726 100644
--- a/.github/workflows/build.yaml
+++ b/.github/workflows/build.yaml
@@ -47,12 +47,14 @@ jobs:
       - name: Install mmseqs
         run: mamba install -c conda-forge -c bioconda mmseqs2
       - name: Install PyTorch
-        run: mamba install -c pytorch pytorch==${{matrix.torch}} cpuonly
-        #run: pip install torch==${{matrix.torch}}+cpu torchvision==${{matrix.torchvision}}+cpu -f https://download.pytorch.org/whl/torch_stable.html
+        #run: mamba install -c pytorch pytorch==${{matrix.torch}} cpuonly
+        run: pip install torch==${{matrix.torch}}+cpu torchvision==${{matrix.torchvision}}+cpu -f https://download.pytorch.org/whl/torch_stable.html
       - name: Install PyG
-        run: mamba install -c pyg pyg
+        #run: mamba install -c pyg pyg
+        run: pip install torch_geometric
       - name: Install torch-cluster
-        run: mamba install pytorch-cluster -c pyg
+        #run: mamba install pytorch-cluster -c pyg
+        run: pip install pyg_lib torch_scatter torch_sparse torch_cluster torch_spline_conv -f https://data.pyg.org/whl/torch-${{matrix.torch}}.html
       - name: Install BLAST
         run: sudo apt install ncbi-blast+
       - name: Install Graphein