diff --git a/src/projects/mts/mts.py b/src/projects/mts/mts.py index cbe25f80f..daa280a7f 100755 --- a/src/projects/mts/mts.py +++ b/src/projects/mts/mts.py @@ -5,7 +5,7 @@ # See file LICENSE for details. ############################################################################ -#!/usr/bin/env python +#!/usr/bin/env python3 from __future__ import (print_function) import argparse diff --git a/src/projects/mts/multirun.py b/src/projects/mts/multirun.py index b2fab54ef..aca9a94ed 100755 --- a/src/projects/mts/multirun.py +++ b/src/projects/mts/multirun.py @@ -5,7 +5,7 @@ # See file LICENSE for details. ############################################################################ -#!/usr/bin/env python +#!/usr/bin/env python3 from __future__ import (print_function) import argparse diff --git a/src/projects/mts/scripts/bhtsne.py b/src/projects/mts/scripts/bhtsne.py index f19d228f7..9c7b98682 100755 --- a/src/projects/mts/scripts/bhtsne.py +++ b/src/projects/mts/scripts/bhtsne.py @@ -5,7 +5,7 @@ # See file LICENSE for details. ############################################################################ -#!/usr/bin/env python +#!/usr/bin/env python3 ''' A simple Python wrapper for the bh_tsne binary that makes it easier to use it diff --git a/src/projects/mts/scripts/bin_profiles.py b/src/projects/mts/scripts/bin_profiles.py index b234d05cf..394864839 100755 --- a/src/projects/mts/scripts/bin_profiles.py +++ b/src/projects/mts/scripts/bin_profiles.py @@ -5,7 +5,7 @@ # See file LICENSE for details. ############################################################################ -#!/usr/bin/env python +#!/usr/bin/env python3 from __future__ import (print_function) import pandas diff --git a/src/projects/mts/scripts/choose_bins.py b/src/projects/mts/scripts/choose_bins.py index 8cb670fc0..8e889032f 100755 --- a/src/projects/mts/scripts/choose_bins.py +++ b/src/projects/mts/scripts/choose_bins.py @@ -5,7 +5,7 @@ # See file LICENSE for details. ############################################################################ -#!/usr/bin/env python +#!/usr/bin/env python3 from __future__ import (print_function) import re diff --git a/src/projects/mts/scripts/choose_samples.py b/src/projects/mts/scripts/choose_samples.py index cec1301ab..3b1b6f330 100755 --- a/src/projects/mts/scripts/choose_samples.py +++ b/src/projects/mts/scripts/choose_samples.py @@ -5,7 +5,7 @@ # See file LICENSE for details. ############################################################################ -#!/usr/bin/env python +#!/usr/bin/env python3 from __future__ import (print_function) import argparse diff --git a/src/projects/mts/scripts/clusters2csv.py b/src/projects/mts/scripts/clusters2csv.py index c28f90f0d..687c261cd 100755 --- a/src/projects/mts/scripts/clusters2csv.py +++ b/src/projects/mts/scripts/clusters2csv.py @@ -5,7 +5,7 @@ # See file LICENSE for details. ############################################################################ -#!/usr/bin/env python +#!/usr/bin/env python3 from __future__ import print_function import sys diff --git a/src/projects/mts/scripts/combine_contigs.py b/src/projects/mts/scripts/combine_contigs.py index e3ff4e03a..dd9d41071 100755 --- a/src/projects/mts/scripts/combine_contigs.py +++ b/src/projects/mts/scripts/combine_contigs.py @@ -5,7 +5,7 @@ # See file LICENSE for details. ############################################################################ -#!/usr/bin/env python +#!/usr/bin/env python3 from __future__ import print_function import sys import os diff --git a/src/projects/mts/scripts/contig_name_filter.py b/src/projects/mts/scripts/contig_name_filter.py index f8c330f98..f3633067e 100755 --- a/src/projects/mts/scripts/contig_name_filter.py +++ b/src/projects/mts/scripts/contig_name_filter.py @@ -5,7 +5,7 @@ # See file LICENSE for details. ############################################################################ -#!/usr/bin/env python +#!/usr/bin/env python3 from __future__ import print_function import sys diff --git a/src/projects/mts/scripts/cut_fasta.py b/src/projects/mts/scripts/cut_fasta.py index 7b86cb370..e7015054e 100755 --- a/src/projects/mts/scripts/cut_fasta.py +++ b/src/projects/mts/scripts/cut_fasta.py @@ -5,7 +5,7 @@ # See file LICENSE for details. ############################################################################ -#!/usr/bin/env python +#!/usr/bin/env python3 """Cut up fasta file in non-overlapping or overlapping parts of equal length. """ from __future__ import print_function diff --git a/src/projects/mts/scripts/gather_stats.py b/src/projects/mts/scripts/gather_stats.py index f06c8b3de..f0cfe6927 100755 --- a/src/projects/mts/scripts/gather_stats.py +++ b/src/projects/mts/scripts/gather_stats.py @@ -5,7 +5,7 @@ # See file LICENSE for details. ############################################################################ -#!/usr/bin/env python +#!/usr/bin/env python3 from __future__ import (print_function) import argparse diff --git a/src/projects/mts/scripts/multi_stats.py b/src/projects/mts/scripts/multi_stats.py index 2c955a50d..299e55ba3 100755 --- a/src/projects/mts/scripts/multi_stats.py +++ b/src/projects/mts/scripts/multi_stats.py @@ -5,7 +5,7 @@ # See file LICENSE for details. ############################################################################ -#!/usr/bin/env python +#!/usr/bin/env python3 from __future__ import (print_function) import argparse diff --git a/src/projects/mts/scripts/split_bins.py b/src/projects/mts/scripts/split_bins.py index 8837ffe72..f65542804 100755 --- a/src/projects/mts/scripts/split_bins.py +++ b/src/projects/mts/scripts/split_bins.py @@ -5,7 +5,7 @@ # See file LICENSE for details. ############################################################################ -#!/usr/bin/env python +#!/usr/bin/env python3 from __future__ import print_function from operator import itemgetter diff --git a/src/projects/mts/scripts/subsample.py b/src/projects/mts/scripts/subsample.py index c3da064c8..cd95bbeb5 100755 --- a/src/projects/mts/scripts/subsample.py +++ b/src/projects/mts/scripts/subsample.py @@ -5,7 +5,7 @@ # See file LICENSE for details. ############################################################################ -#!/usr/bin/env python +#!/usr/bin/env python3 from __future__ import (print_function) import argparse diff --git a/src/projects/spades/pipeline/spades.py b/src/projects/spades/pipeline/spades.py index 2791772ae..258c0a490 100755 --- a/src/projects/spades/pipeline/spades.py +++ b/src/projects/spades/pipeline/spades.py @@ -1,4 +1,4 @@ -#!/usr/bin/env python +#!/usr/bin/env python3 ############################################################################ # Copyright (c) 2023-2024 SPAdes team diff --git a/src/projects/spades/pipeline/spades_init.py b/src/projects/spades/pipeline/spades_init.py index 393ff35f1..a3d850f8f 100755 --- a/src/projects/spades/pipeline/spades_init.py +++ b/src/projects/spades/pipeline/spades_init.py @@ -1,4 +1,4 @@ -#!/usr/bin/env python +#!/usr/bin/env python3 ############################################################################ # Copyright (c) 2023-2024 SPAdes team diff --git a/src/projects/spades/pipeline/spades_pipeline/commands_parser.py b/src/projects/spades/pipeline/spades_pipeline/commands_parser.py index 52a76d986..8b5820713 100644 --- a/src/projects/spades/pipeline/spades_pipeline/commands_parser.py +++ b/src/projects/spades/pipeline/spades_pipeline/commands_parser.py @@ -1,4 +1,4 @@ -#!/usr/bin/env python +#!/usr/bin/env python3 ############################################################################ # Copyright (c) 2023-2024 SPAdes team diff --git a/src/projects/spades/pipeline/spades_pipeline/executors/executor_local.py b/src/projects/spades/pipeline/spades_pipeline/executors/executor_local.py index 204348e22..6a38563c0 100644 --- a/src/projects/spades/pipeline/spades_pipeline/executors/executor_local.py +++ b/src/projects/spades/pipeline/spades_pipeline/executors/executor_local.py @@ -1,4 +1,4 @@ -#!/usr/bin/env python +#!/usr/bin/env python3 ############################################################################ # Copyright (c) 2023-2024 SPAdes team diff --git a/src/projects/spades/pipeline/spades_pipeline/executors/executor_save_yaml.py b/src/projects/spades/pipeline/spades_pipeline/executors/executor_save_yaml.py index 87e4c6b7a..2b11048da 100644 --- a/src/projects/spades/pipeline/spades_pipeline/executors/executor_save_yaml.py +++ b/src/projects/spades/pipeline/spades_pipeline/executors/executor_save_yaml.py @@ -1,4 +1,4 @@ -#!/usr/bin/env python +#!/usr/bin/env python3 ############################################################################ # Copyright (c) 2023-2024 SPAdes team diff --git a/src/projects/spades/pipeline/spades_pipeline/executors/executors.py b/src/projects/spades/pipeline/spades_pipeline/executors/executors.py index 3e6a996dc..9f46fa832 100644 --- a/src/projects/spades/pipeline/spades_pipeline/executors/executors.py +++ b/src/projects/spades/pipeline/spades_pipeline/executors/executors.py @@ -1,4 +1,4 @@ -#!/usr/bin/env python +#!/usr/bin/env python3 ############################################################################ # Copyright (c) 2023-2024 SPAdes team diff --git a/src/projects/spades/pipeline/spades_pipeline/options_parser.py b/src/projects/spades/pipeline/spades_pipeline/options_parser.py index 0360de0fa..07461f011 100644 --- a/src/projects/spades/pipeline/spades_pipeline/options_parser.py +++ b/src/projects/spades/pipeline/spades_pipeline/options_parser.py @@ -1,4 +1,4 @@ -#!/usr/bin/env python +#!/usr/bin/env python3 ############################################################################ # Copyright (c) 2023-2024 SPAdes team diff --git a/src/projects/spades/pipeline/spades_pipeline/options_storage.py b/src/projects/spades/pipeline/spades_pipeline/options_storage.py index 3bb7af3cd..693af58f8 100644 --- a/src/projects/spades/pipeline/spades_pipeline/options_storage.py +++ b/src/projects/spades/pipeline/spades_pipeline/options_storage.py @@ -1,4 +1,4 @@ -#!/usr/bin/env python +#!/usr/bin/env python3 ############################################################################ # Copyright (c) 2023-2024 SPAdes team diff --git a/src/projects/spades/pipeline/spades_pipeline/process_cfg.py b/src/projects/spades/pipeline/spades_pipeline/process_cfg.py index d7c7c80a1..c6e4295a2 100644 --- a/src/projects/spades/pipeline/spades_pipeline/process_cfg.py +++ b/src/projects/spades/pipeline/spades_pipeline/process_cfg.py @@ -1,4 +1,4 @@ -#!/usr/bin/env python +#!/usr/bin/env python3 ############################################################################ # Copyright (c) 2023-2024 SPAdes team diff --git a/src/projects/spades/pipeline/spades_pipeline/scripts/breaking_scaffolds_script.py b/src/projects/spades/pipeline/spades_pipeline/scripts/breaking_scaffolds_script.py index 3898c8914..b7ad60271 100644 --- a/src/projects/spades/pipeline/spades_pipeline/scripts/breaking_scaffolds_script.py +++ b/src/projects/spades/pipeline/spades_pipeline/scripts/breaking_scaffolds_script.py @@ -1,4 +1,4 @@ -#!/usr/bin/env python +#!/usr/bin/env python3 ############################################################################ # Copyright (c) 2023-2024 SPAdes team diff --git a/src/projects/spades/pipeline/spades_pipeline/scripts/check_test_script.py b/src/projects/spades/pipeline/spades_pipeline/scripts/check_test_script.py index 957df9e9c..02dbcd4cc 100644 --- a/src/projects/spades/pipeline/spades_pipeline/scripts/check_test_script.py +++ b/src/projects/spades/pipeline/spades_pipeline/scripts/check_test_script.py @@ -1,4 +1,4 @@ -#!/usr/bin/env python +#!/usr/bin/env python3 ############################################################################ # Copyright (c) 2023-2024 SPAdes team diff --git a/src/projects/spades/pipeline/spades_pipeline/scripts/compress_all.py b/src/projects/spades/pipeline/spades_pipeline/scripts/compress_all.py index f731a36da..951f5890c 100644 --- a/src/projects/spades/pipeline/spades_pipeline/scripts/compress_all.py +++ b/src/projects/spades/pipeline/spades_pipeline/scripts/compress_all.py @@ -1,4 +1,4 @@ -#!/usr/bin/env python +#!/usr/bin/env python3 ############################################################################ # Copyright (c) 2023-2024 SPAdes team diff --git a/src/projects/spades/pipeline/spades_pipeline/scripts/copy_files.py b/src/projects/spades/pipeline/spades_pipeline/scripts/copy_files.py index 3494cd642..f6017a360 100644 --- a/src/projects/spades/pipeline/spades_pipeline/scripts/copy_files.py +++ b/src/projects/spades/pipeline/spades_pipeline/scripts/copy_files.py @@ -1,4 +1,4 @@ -#!/usr/bin/env python +#!/usr/bin/env python3 ############################################################################ # Copyright (c) 2023-2024 SPAdes team diff --git a/src/projects/spades/pipeline/spades_pipeline/scripts/correction_iteration_script.py b/src/projects/spades/pipeline/spades_pipeline/scripts/correction_iteration_script.py index acdee2e7a..b4d073d7a 100644 --- a/src/projects/spades/pipeline/spades_pipeline/scripts/correction_iteration_script.py +++ b/src/projects/spades/pipeline/spades_pipeline/scripts/correction_iteration_script.py @@ -1,4 +1,4 @@ -#!/usr/bin/env python +#!/usr/bin/env python3 ############################################################################ # Copyright (c) 2023-2024 SPAdes team diff --git a/src/projects/spades/pipeline/spades_pipeline/scripts/plasmid_glue.py b/src/projects/spades/pipeline/spades_pipeline/scripts/plasmid_glue.py index f9f6b5507..dd17b70be 100755 --- a/src/projects/spades/pipeline/spades_pipeline/scripts/plasmid_glue.py +++ b/src/projects/spades/pipeline/spades_pipeline/scripts/plasmid_glue.py @@ -5,7 +5,7 @@ # See file LICENSE for details. ############################################################################ -#!/usr/bin/env python +#!/usr/bin/env python3 import os import sys diff --git a/src/projects/spades/pipeline/spades_pipeline/scripts/preprocess_contigs.py b/src/projects/spades/pipeline/spades_pipeline/scripts/preprocess_contigs.py index d3afc7f89..f75c6daec 100644 --- a/src/projects/spades/pipeline/spades_pipeline/scripts/preprocess_contigs.py +++ b/src/projects/spades/pipeline/spades_pipeline/scripts/preprocess_contigs.py @@ -1,4 +1,4 @@ -#!/usr/bin/env python +#!/usr/bin/env python3 ############################################################################ # Copyright (c) 2023-2024 SPAdes team diff --git a/src/projects/spades/pipeline/spades_pipeline/scripts/preprocess_interlaced_reads.py b/src/projects/spades/pipeline/spades_pipeline/scripts/preprocess_interlaced_reads.py index 496d1214e..ded6fddf2 100644 --- a/src/projects/spades/pipeline/spades_pipeline/scripts/preprocess_interlaced_reads.py +++ b/src/projects/spades/pipeline/spades_pipeline/scripts/preprocess_interlaced_reads.py @@ -1,4 +1,4 @@ -#!/usr/bin/env python +#!/usr/bin/env python3 ############################################################################ # Copyright (c) 2023-2024 SPAdes team diff --git a/src/projects/spades/pipeline/spades_pipeline/stages/before_start_stage.py b/src/projects/spades/pipeline/spades_pipeline/stages/before_start_stage.py index f2df4a3e5..55fe9855c 100644 --- a/src/projects/spades/pipeline/spades_pipeline/stages/before_start_stage.py +++ b/src/projects/spades/pipeline/spades_pipeline/stages/before_start_stage.py @@ -1,4 +1,4 @@ -#!/usr/bin/env python +#!/usr/bin/env python3 ############################################################################ # Copyright (c) 2023-2024 SPAdes team diff --git a/src/projects/spades/pipeline/spades_pipeline/stages/breaking_scaffolds_stage.py b/src/projects/spades/pipeline/spades_pipeline/stages/breaking_scaffolds_stage.py index e56681d22..cb42c45ea 100644 --- a/src/projects/spades/pipeline/spades_pipeline/stages/breaking_scaffolds_stage.py +++ b/src/projects/spades/pipeline/spades_pipeline/stages/breaking_scaffolds_stage.py @@ -1,4 +1,4 @@ -#!/usr/bin/env python +#!/usr/bin/env python3 ############################################################################ # Copyright (c) 2023-2024 SPAdes team diff --git a/src/projects/spades/pipeline/spades_pipeline/stages/check_test_stage.py b/src/projects/spades/pipeline/spades_pipeline/stages/check_test_stage.py index 5d2ec86e9..34ec390fc 100644 --- a/src/projects/spades/pipeline/spades_pipeline/stages/check_test_stage.py +++ b/src/projects/spades/pipeline/spades_pipeline/stages/check_test_stage.py @@ -1,4 +1,4 @@ -#!/usr/bin/env python +#!/usr/bin/env python3 ############################################################################ # Copyright (c) 2023-2024 SPAdes team diff --git a/src/projects/spades/pipeline/spades_pipeline/stages/correction_stage.py b/src/projects/spades/pipeline/spades_pipeline/stages/correction_stage.py index 4b8423de5..4c1b7b4db 100644 --- a/src/projects/spades/pipeline/spades_pipeline/stages/correction_stage.py +++ b/src/projects/spades/pipeline/spades_pipeline/stages/correction_stage.py @@ -1,4 +1,4 @@ -#!/usr/bin/env python +#!/usr/bin/env python3 ############################################################################ # Copyright (c) 2023-2024 SPAdes team diff --git a/src/projects/spades/pipeline/spades_pipeline/stages/error_correction_stage.py b/src/projects/spades/pipeline/spades_pipeline/stages/error_correction_stage.py index bd21e9053..2cf8e0bd2 100644 --- a/src/projects/spades/pipeline/spades_pipeline/stages/error_correction_stage.py +++ b/src/projects/spades/pipeline/spades_pipeline/stages/error_correction_stage.py @@ -1,4 +1,4 @@ -#!/usr/bin/env python +#!/usr/bin/env python3 ############################################################################ # Copyright (c) 2023-2024 SPAdes team diff --git a/src/projects/spades/pipeline/spades_pipeline/stages/pipeline.py b/src/projects/spades/pipeline/spades_pipeline/stages/pipeline.py index b50d9564c..b65ad7032 100644 --- a/src/projects/spades/pipeline/spades_pipeline/stages/pipeline.py +++ b/src/projects/spades/pipeline/spades_pipeline/stages/pipeline.py @@ -1,4 +1,4 @@ -#!/usr/bin/env python +#!/usr/bin/env python3 ############################################################################ # Copyright (c) 2023-2024 SPAdes team diff --git a/src/projects/spades/pipeline/spades_pipeline/stages/preprocess_reads_stage.py b/src/projects/spades/pipeline/spades_pipeline/stages/preprocess_reads_stage.py index 3c6eb0065..72821e061 100644 --- a/src/projects/spades/pipeline/spades_pipeline/stages/preprocess_reads_stage.py +++ b/src/projects/spades/pipeline/spades_pipeline/stages/preprocess_reads_stage.py @@ -1,4 +1,4 @@ -#!/usr/bin/env python +#!/usr/bin/env python3 ############################################################################ # Copyright (c) 2023-2024 SPAdes team diff --git a/src/projects/spades/pipeline/spades_pipeline/stages/scaffold_correction_stage.py b/src/projects/spades/pipeline/spades_pipeline/stages/scaffold_correction_stage.py index 251e500b4..1729f9e5e 100644 --- a/src/projects/spades/pipeline/spades_pipeline/stages/scaffold_correction_stage.py +++ b/src/projects/spades/pipeline/spades_pipeline/stages/scaffold_correction_stage.py @@ -1,4 +1,4 @@ -#!/usr/bin/env python +#!/usr/bin/env python3 ############################################################################ # Copyright (c) 2023-2024 SPAdes team diff --git a/src/projects/spades/pipeline/spades_pipeline/stages/spades_iteration_stage.py b/src/projects/spades/pipeline/spades_pipeline/stages/spades_iteration_stage.py index 53fe75e1a..2b56dc654 100644 --- a/src/projects/spades/pipeline/spades_pipeline/stages/spades_iteration_stage.py +++ b/src/projects/spades/pipeline/spades_pipeline/stages/spades_iteration_stage.py @@ -1,4 +1,4 @@ -#!/usr/bin/env python +#!/usr/bin/env python3 ############################################################################ # Copyright (c) 2023-2024 SPAdes team diff --git a/src/projects/spades/pipeline/spades_pipeline/stages/spades_stage.py b/src/projects/spades/pipeline/spades_pipeline/stages/spades_stage.py index 846d1a9e7..6a563c67b 100644 --- a/src/projects/spades/pipeline/spades_pipeline/stages/spades_stage.py +++ b/src/projects/spades/pipeline/spades_pipeline/stages/spades_stage.py @@ -1,4 +1,4 @@ -#!/usr/bin/env python +#!/usr/bin/env python3 ############################################################################ # Copyright (c) 2023-2024 SPAdes team diff --git a/src/projects/spades/pipeline/spades_pipeline/stages/stage.py b/src/projects/spades/pipeline/spades_pipeline/stages/stage.py index 93f1c4b90..b1511129e 100644 --- a/src/projects/spades/pipeline/spades_pipeline/stages/stage.py +++ b/src/projects/spades/pipeline/spades_pipeline/stages/stage.py @@ -1,4 +1,4 @@ -#!/usr/bin/env python +#!/usr/bin/env python3 ############################################################################ # Copyright (c) 2023-2024 SPAdes team diff --git a/src/projects/spades/pipeline/spades_pipeline/stages/terminating_stage.py b/src/projects/spades/pipeline/spades_pipeline/stages/terminating_stage.py index 8ba740fb0..f0b7f1839 100644 --- a/src/projects/spades/pipeline/spades_pipeline/stages/terminating_stage.py +++ b/src/projects/spades/pipeline/spades_pipeline/stages/terminating_stage.py @@ -1,4 +1,4 @@ -#!/usr/bin/env python +#!/usr/bin/env python3 ############################################################################ # Copyright (c) 2023-2024 SPAdes team diff --git a/src/projects/spades/pipeline/spades_pipeline/support.py b/src/projects/spades/pipeline/spades_pipeline/support.py index 61d9d5c5d..0d5c4e38d 100644 --- a/src/projects/spades/pipeline/spades_pipeline/support.py +++ b/src/projects/spades/pipeline/spades_pipeline/support.py @@ -1,4 +1,4 @@ -#!/usr/bin/env python +#!/usr/bin/env python3 ############################################################################ # Copyright (c) 2023-2024 SPAdes team diff --git a/src/projects/spades_tools/kmerbin_converter.py b/src/projects/spades_tools/kmerbin_converter.py index 825ab5420..e82f1d2bb 100644 --- a/src/projects/spades_tools/kmerbin_converter.py +++ b/src/projects/spades_tools/kmerbin_converter.py @@ -1,4 +1,4 @@ -#!/usr/bin/env python +#!/usr/bin/env python3 ############################################################################ # Copyright (c) 2023-2024 SPAdes team diff --git a/src/projects/spaligner/benchmarking/benchmarking_stats.py b/src/projects/spaligner/benchmarking/benchmarking_stats.py index 6134842e5..31a78da67 100755 --- a/src/projects/spaligner/benchmarking/benchmarking_stats.py +++ b/src/projects/spaligner/benchmarking/benchmarking_stats.py @@ -5,7 +5,7 @@ # See file LICENSE for details. ############################################################################ -#!/usr/bin/env python +#!/usr/bin/env python3 import sys import json import unicodedata diff --git a/src/projects/spaligner/benchmarking/test_spaligner.py b/src/projects/spaligner/benchmarking/test_spaligner.py index 4a755c512..826cef677 100755 --- a/src/projects/spaligner/benchmarking/test_spaligner.py +++ b/src/projects/spaligner/benchmarking/test_spaligner.py @@ -5,7 +5,7 @@ # See file LICENSE for details. ############################################################################ -#!/usr/bin/env python +#!/usr/bin/env python3 import sys import json import unicodedata diff --git a/src/test/teamcity/github_runner.py b/src/test/teamcity/github_runner.py index 00ebb1e9b..a16e6d3a2 100755 --- a/src/test/teamcity/github_runner.py +++ b/src/test/teamcity/github_runner.py @@ -1,4 +1,4 @@ -#!/usr/bin/env python +#!/usr/bin/env python3 ############################################################################ # Copyright (c) 2023-2024 SPAdes team diff --git a/src/test/teamcity/process_cfg.py b/src/test/teamcity/process_cfg.py index 211b8b525..98f4148ee 100644 --- a/src/test/teamcity/process_cfg.py +++ b/src/test/teamcity/process_cfg.py @@ -1,4 +1,4 @@ -#!/usr/bin/env python +#!/usr/bin/env python3 ############################################################################ # Copyright (c) 2023-2024 SPAdes team diff --git a/src/test/teamcity/update_saves.py b/src/test/teamcity/update_saves.py index 9e6468b3d..5a07cd682 100755 --- a/src/test/teamcity/update_saves.py +++ b/src/test/teamcity/update_saves.py @@ -1,4 +1,4 @@ -#!/usr/bin/env python +#!/usr/bin/env python3 ############################################################################ # Copyright (c) 2023-2024 SPAdes team diff --git a/src/tools/misc/copyrighter.py b/src/tools/misc/copyrighter.py index 01cc3acb3..76d6c9d13 100755 --- a/src/tools/misc/copyrighter.py +++ b/src/tools/misc/copyrighter.py @@ -1,4 +1,4 @@ -#!/usr/bin/env python +#!/usr/bin/env python3 ############################################################################ # Copyright (c) 2023-2024 SPAdes team diff --git a/src/tools/misc/datasets_converter.py b/src/tools/misc/datasets_converter.py index 9c476ee12..f9fd27d6a 100755 --- a/src/tools/misc/datasets_converter.py +++ b/src/tools/misc/datasets_converter.py @@ -1,4 +1,4 @@ -#!/usr/bin/env python +#!/usr/bin/env python3 ############################################################################ # Copyright (c) 2023-2024 SPAdes team diff --git a/src/tools/misc/datasets_info2yaml_converter.py b/src/tools/misc/datasets_info2yaml_converter.py index 5bada4850..d12c8f363 100755 --- a/src/tools/misc/datasets_info2yaml_converter.py +++ b/src/tools/misc/datasets_info2yaml_converter.py @@ -1,4 +1,4 @@ -#!/usr/bin/env python +#!/usr/bin/env python3 ############################################################################ # Copyright (c) 2023-2024 SPAdes team diff --git a/src/tools/misc/datasets_info_cleaner.py b/src/tools/misc/datasets_info_cleaner.py index 7b4e03ada..22bc5bbfd 100755 --- a/src/tools/misc/datasets_info_cleaner.py +++ b/src/tools/misc/datasets_info_cleaner.py @@ -1,4 +1,4 @@ -#!/usr/bin/env python +#!/usr/bin/env python3 ############################################################################ # Copyright (c) 2023-2024 SPAdes team diff --git a/src/tools/misc/sv_simulator.py b/src/tools/misc/sv_simulator.py index b72b2aa7d..c3e792196 100644 --- a/src/tools/misc/sv_simulator.py +++ b/src/tools/misc/sv_simulator.py @@ -1,4 +1,4 @@ -#!/usr/bin/env python +#!/usr/bin/env python3 ############################################################################ # Copyright (c) 2023-2024 SPAdes team diff --git a/src/tools/misc/txt2gff.py b/src/tools/misc/txt2gff.py index 6dc080421..1ed371274 100755 --- a/src/tools/misc/txt2gff.py +++ b/src/tools/misc/txt2gff.py @@ -1,4 +1,4 @@ -#!/usr/bin/env python +#!/usr/bin/env python3 ############################################################################ # Copyright (c) 2023-2024 SPAdes team diff --git a/src/tools/reads_utils/crop/crop_bfaecium.py b/src/tools/reads_utils/crop/crop_bfaecium.py index 7707f271e..d7aa6ccae 100644 --- a/src/tools/reads_utils/crop/crop_bfaecium.py +++ b/src/tools/reads_utils/crop/crop_bfaecium.py @@ -1,4 +1,4 @@ -#!/usr/bin/env python +#!/usr/bin/env python3 ############################################################################ # Copyright (c) 2023-2024 SPAdes team diff --git a/src/tools/reads_utils/ideal_by_fasta.py b/src/tools/reads_utils/ideal_by_fasta.py index efba90dca..55523906e 100755 --- a/src/tools/reads_utils/ideal_by_fasta.py +++ b/src/tools/reads_utils/ideal_by_fasta.py @@ -1,4 +1,4 @@ -#!/usr/bin/env python +#!/usr/bin/env python3 ############################################################################ # Copyright (c) 2023-2024 SPAdes team