What is rankingsInDb? #313
Unanswered
brush111111111111
asked this question in
[R]
Replies: 0 comments
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
-
Hi. I've created my own feather file for Rat genome and tried to run SCENIC with it, and SCENIC throws this error when I run
scenicOptions <- runSCENIC_2_createRegulons(scenicOptions)
.Also, when I import my feathers when initializing, SCENIC throws a warning
I tried using the default mouse database on my rat dataset with everything else the same and the entire SCENIC process runs fine, so something must be wrong with my feather file.
I created my feather following aertslab/create_cisTarget_databases#4 , and the outputs were all normal. Genes were ranked properly, and
importRankings
had no problem reading it. So I am unsure what I'm missing, and whatrankingsInDB
is.Beta Was this translation helpful? Give feedback.
All reactions