Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

RSS top eRegulon jaccard heatmap #436

Open
alirosen opened this issue Jan 4, 2024 · 0 comments
Open

RSS top eRegulon jaccard heatmap #436

alirosen opened this issue Jan 4, 2024 · 0 comments

Comments

@alirosen
Copy link

alirosen commented Jan 4, 2024

Hi!

I'm trying to visualize my top eRegulons with the jaccard_heatmap function (following 10X multiome pbmc tutorial).

My code is here:

from scenicplus.plotting.correlation_plot import *
region_intersetc_data, Z = jaccard_heatmap(scplus_obj,
                                           method = 'intersect',
                                           gene_or_region_based = 'Region_based',
                                           use_plotly = False,
                                           selected_regulons = selected_markers,
                                           signature_key = 'eRegulon_signatures_filtered',
                                           figsize = (10, 10), return_data = True, vmax = 0.5, cmap = 'plasma')  

When I save with plt.savefig the image just shows the last plot generated. Can someone help me generate this heatmap? Thank you!

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant