diff --git a/src/pyscenic/cli/pyscenic.py b/src/pyscenic/cli/pyscenic.py index 536d8f0..53f3a32 100644 --- a/src/pyscenic/cli/pyscenic.py +++ b/src/pyscenic/cli/pyscenic.py @@ -77,7 +77,7 @@ def find_adjacencies_command(args): LOGGER.info("Writing results to file.") - extension = PurePath(fname).suffixes + extension = PurePath(args.output.name).suffixes network.to_csv(args.output, index=False, sep=suffixes_to_separator(extension))