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__ascat1.md

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Open the ASCAT profile

tumor2.ASCATprofile.png

We can see from the graph that major part of the genome is diploid (chr 1, 4, 5-partial, 6, 8, 9, 10, 14, 15, 17, 18, 21 and 22). Some few deletion can be observed (chr 2 and 3) and many large dupications (chr 2, 3, 5, 7, 11, 13, 16, 19, 20). This large amount of duplicated region explain the ploidy estimate.