build-test.yml

name: Build SPARC using conda-build toolchains and perform quick test (no upload)

on: 
  push:
    branches:
      - master
  pull_request:
    branches:
      - master
  workflow_dispatch:

jobs:
  build-linux:
    runs-on: ubuntu-latest
    defaults:
      run:
        shell: bash -l {0}
    strategy:
      max-parallel: 5

    steps:
    - uses: actions/checkout@v3
    - uses: conda-incubator/setup-miniconda@v2
      with:
        python-version: "3.10"
        activate-environment: sparc-test
        conda-build-version: ">=3.20"
        #mamba-version: "*"
        miniforge-variant: "Mambaforge" # Fix according to https://github.com/nextstrain/cli/commit/4a764976519ca5c540c745463548a9d883eae079
        channels: conda-forge,defaults
        channel-priority: true
    - name: Install boa dependencies
      run: |
        mamba install -c conda-forge pip "conda-build>=3.20" "colorama=0.4"  "ruamel=1.0" "ruamel.yaml=0.17" "rich=13.6" "mamba=1.5" "jsonschema=4.19"
        pip install git+https://github.com/mamba-org/boa.git@81dc74a9974ecd02494b300fb97a0a7b2f186afc
    - name: Build with mambabuild
      run: |
        echo $CONDA_PREFIX
        conda info
        CPU_COUNT=2 conda mambabuild .conda/
    - name: Install local build
      run: |
        mamba install --use-local sparc
    - name: Test simple sparc run
      run: |
        cd tests/Cu_FCC/standard/
        mpirun -n 2 sparc -name Cu_FCC
    - name: Perform comprehensive tests using `quick_run`
      run: |
        cp $(which sparc) lib/
        cd tests
        export LD_LIBRARY_PATH=${CONDA_PREFIX}/lib:${LD_LIBRARY_PATH}
        python SPARC_testing_script.py quick_run | tee output
        n_failed=$(grep -o 'Tests failed: [0-9]\+' output | grep -o '[0-9]\+$')
        # Force fail, see what happens
        unset LD_LIBRARY_PATH
        python -c "import os, re; match = re.findall(r'Tests failed: (\d+)', open('output').read()); [print('All pass'), os._exit(0)] if int(match[0]) == 0 else [print('Failed'), os._exit(1)]"
        rm -rf output

  build-linux-socket:
    runs-on: ubuntu-latest
    defaults:
      run:
        shell: bash -l {0}
    strategy:
      max-parallel: 5

    steps:
    - uses: actions/checkout@v3
    - uses: conda-incubator/setup-miniconda@v2
      with:
        python-version: "3.10"
        activate-environment: sparc-test
        conda-build-version: ">=3.20"
        #mamba-version: "*"
        miniforge-variant: "Mambaforge" # Fix according to https://github.com/nextstrain/cli/commit/4a764976519ca5c540c745463548a9d883eae079
        channels: conda-forge,defaults
        channel-priority: true
    - name: Install compiler dependencies
      run: |
        mamba install -c conda-forge python=3.10 pip compilers openmpi fftw openblas scalapack sparc-x-api
    - name: Build the socket version
      run: |
        echo $CONDA_PREFIX
        conda info
        cd src/ && make -j2 USE_MKL=0 USE_SCALAPACK=1 USE_SOCKET=1 DEBUG_MODE=1
  
    - name: Run socket unit tests
      run: |
        cd tests/Socket_tests
        bash run_all.sh