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run.py
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run.py
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import argparse
import json
import logging
import numpy as np
import os
import random
import torch
from typing import Any
from typing import Dict
from typing import TextIO
from typing import Tuple
from collections import Counter, defaultdict
from sklearn.metrics import f1_score
from sklearn.preprocessing import MultiLabelBinarizer
from tokenizers import BertWordPieceTokenizer
from torch.utils.data import DataLoader
from torch.utils.tensorboard import SummaryWriter
from tqdm import tqdm
from tqdm import trange
from transformers import AdamW
from constants import SPECIAL_TOKENS
from data_readers import IntentDataset, SlotDataset, TOPDataset
from bert_models import BertPretrain, ExampleIntentBertModel, IntentBertModel, JointSlotIntentBertModel, SlotBertModel
logging.basicConfig(
format="%(asctime)s - %(levelname)s - %(name)s - %(message)s",
datefmt="%m/%d/%Y %H:%M:%S",
level=logging.INFO
)
LOGGER = logging.getLogger(__name__)
def read_args():
parser = argparse.ArgumentParser()
parser.add_argument("--train_data_path", type=str)
parser.add_argument("--test_data_path", type=str)
parser.add_argument("--val_data_path", type=str, default='')
parser.add_argument("--mlm_data_path", type=str, default='')
parser.add_argument("--token_vocab_path", type=str)
parser.add_argument("--output_dir", type=str, default='')
parser.add_argument("--model_name_or_path", type=str, default="bert-base-uncased")
parser.add_argument("--task", type=str, choices=["intent", "slot", "top"])
parser.add_argument("--dump_outputs", action="store_true")
parser.add_argument("--mlm_pre", action="store_true")
parser.add_argument("--mlm_during", action="store_true")
parser.add_argument("--example", action="store_true")
parser.add_argument("--use_observers", action="store_true")
parser.add_argument("--repeat", type=int, default=1)
parser.add_argument("--grad_accum", type=int, default=1)
parser.add_argument("--train_batch_size", type=int, default=16)
parser.add_argument("--max_seq_length", type=int, default=50)
parser.add_argument("--num_epochs", type=int, default=3)
parser.add_argument("--patience", type=int, default=5)
parser.add_argument("--logging_steps", type=int, default=100)
parser.add_argument("--do_lowercase", action="store_true")
parser.add_argument("--dropout", type=float, default=0.5)
parser.add_argument("--learning_rate", default=5e-5, type=float, help="The initial learning rate for Adam.")
parser.add_argument("--adam_epsilon", default=1e-8, type=float, help="Epsilon for Adam optimizer.")
parser.add_argument("--weight_decay", default=0.0, type=float, help="Weight decay if we apply some.")
parser.add_argument("--device", default=0, type=int, help="GPU device #")
parser.add_argument("--max_grad_norm", default=-1.0, type=float, help="Max gradient norm.")
parser.add_argument("--seed", type=int, default=42)
return parser.parse_args()
def retrieve_examples(dataset, labels, inds, task, num=None, cache=defaultdict(list)):
if num is None and labels is not None:
num = len(labels) * 2
assert task == "intent", "Example-driven may only be used with intent prediction"
if len(cache) == 0:
# Populate cache
for i, example in enumerate(dataset):
cache[example['intent_label']].append(i)
print("Populated example cache.")
# One example for each label
example_inds = []
for l in set(labels.tolist()):
if l == -1:
continue
ind = random.choice(cache[l])
retries = 0
while ind in inds.tolist() or type(ind) is not int:
ind = random.choice(cache[l])
retries += 1
if retries > len(dataset):
break
example_inds.append(ind)
# Sample randomly until we hit batch size
while len(example_inds) < min(len(dataset), num):
ind = random.randint(0, len(dataset) - 1)
if ind not in example_inds and ind not in inds.tolist():
example_inds.append(ind)
# Create examples
example_data = [dataset[i] for i in example_inds]
examples = {}
for key in ['input_ids', 'attention_mask', 'token_type_ids']:
examples[key] = torch.stack([torch.LongTensor(e[key]) for e in example_data], dim=0).cuda()
examples['intent_label'] = torch.LongTensor([e['intent_label'] for e in example_data]).cuda()
return examples
def evaluate(model: torch.nn.Module,
eval_dataloader: DataLoader,
ex_dataloader: DataLoader,
tokenizer: Any,
task: str = "intent",
example: bool = False,
device: int = 0,
args: Any = None) -> Tuple[float, float, float]:
model.eval()
bert_output = []
labels = []
if example:
assert task == "intent", "Example-Driven may only be used for intent prediction"
with torch.no_grad():
for batch in tqdm(ex_dataloader, desc="Building train memory."):
# Move to GPU
if torch.cuda.is_available():
for key, val in batch.items():
if type(batch[key]) is list:
continue
batch[key] = batch[key].to(device)
pooled_output = model.encode(batch["input_ids"], batch["attention_mask"], batch["token_type_ids"])
bert_output.append(pooled_output.cpu())
labels += batch["intent_label"].tolist()
mem = torch.cat(bert_output, dim=0).cuda()
print("Memory size:", mem.size())
pred = []
true = []
for batch in tqdm(eval_dataloader, desc="Evaluating"):
with torch.no_grad():
# Move to GPU
if torch.cuda.is_available():
for key, val in batch.items():
if type(batch[key]) is list:
continue
batch[key] = batch[key].to(device)
if task == "intent":
if not example:
# Forward prop
intent_logits, intent_loss = model(input_ids=batch["input_ids"],
attention_mask=batch["attention_mask"],
token_type_ids=batch["token_type_ids"],
intent_label=batch["intent_label"])
# Argmax to get predictions
intent_preds = torch.argmax(intent_logits, dim=1).cpu().tolist()
pred += intent_preds
true += batch["intent_label"].cpu().tolist()
else:
# Encode input
pooled_output = model.encode(batch["input_ids"], batch["attention_mask"], batch["token_type_ids"])
# Probability distribution over examples
probs = torch.softmax(pooled_output.mm(mem.t())[0], dim=-1)
# Copy mechanism over training set
intent_probs = torch.zeros(len(ex_dataloader.dataset.intent_idx_to_label)).cuda().scatter_add(0,
torch.LongTensor(
labels).cuda(),
probs)
pred.append(intent_probs.argmax(dim=-1).item())
true += batch["intent_label"].cpu().tolist()
elif task == "slot":
# Forward prop
slot_logits, slot_loss = model(input_ids=batch["input_ids"],
attention_mask=batch["attention_mask"],
token_type_ids=batch["token_type_ids"],
slot_labels=batch["slot_labels"])
# Argmax to get predictions
slot_preds = torch.argmax(slot_logits, dim=2).detach().cpu().numpy()
# Generate words, true slots and pred slots
words = [tokenizer.decode([e]) for e in batch["input_ids"][0].tolist()]
actual_gold_slots = batch["slot_labels"].cpu().numpy().squeeze().tolist()
true_slots = [eval_dataloader.dataset.slot_idx_to_label[s] for s in actual_gold_slots]
actual_predicted_slots = slot_preds.squeeze().tolist()
pred_slots = [eval_dataloader.dataset.slot_idx_to_label[s] for s in actual_predicted_slots]
# Find the last turn and only include that. Irrelevant for restaurant8k/dstc8-sgd.
if '>' in words:
ind = words[::-1].index('>')
words = words[-ind:]
true_slots = true_slots[-ind:]
pred_slots = pred_slots[-ind:]
# Filter out words that are padding
filt_words = [w for w in words if w not in ['', 'user']]
true_slots = [s for w, s in zip(words, true_slots) if w not in ['', 'user']]
pred_slots = [s for w, s in zip(words, pred_slots) if w not in ['', 'user']]
# Convert to slot labels
pred.append(pred_slots)
true.append(true_slots)
assert len(pred_slots) == len(true_slots)
assert len(pred_slots) == len(filt_words)
elif task == "top":
intent_logits, slot_logits, _ = model(input_ids=batch["input_ids"],
attention_mask=batch["attention_mask"],
token_type_ids=batch["token_type_ids"])
# Argmax to get intent predictions
intent_preds = torch.argmax(intent_logits, dim=1).cpu().tolist()
# Argmax to get slot predictions
slot_preds = torch.argmax(slot_logits, dim=2).detach().cpu().numpy()
actual_predicted_slots = slot_preds.squeeze().tolist()
intent_true = batch["intent_label"].cpu().tolist()
actual_gold_slots = batch["slot_labels"].cpu().numpy().squeeze().tolist()
# Only unmasked
pad_ind = batch["attention_mask"].tolist()[0].index(0)
actual_gold_slots = actual_gold_slots[1:pad_ind - 1]
actual_predicted_slots = actual_predicted_slots[1:pad_ind - 1]
# Add to lists
pred.append((intent_preds if type(intent_preds) is int else intent_preds[0], actual_predicted_slots))
true.append((intent_true[0], actual_gold_slots))
def _extract(slot_labels):
"""
Convert from IBO slot labels to spans.
"""
slots = []
cur_key = None
start_ind = -1
for i, s in enumerate(slot_labels):
if s == "O" or s == "[PAD]":
# Add on-going slot if there is one
if cur_key is not None:
slots.append("{}:{}-{}".format(cur_key, start_ind, i))
cur_key = None
continue
token_type, slot_key = s.split("-", 1)
if token_type == "B":
# If there is an on-going slot right now, add it
if cur_key is not None:
slots.append("{}:{}-{}".format(cur_key, start_ind, i))
cur_key = slot_key
start_ind = i
elif token_type == "I":
# If the slot key doesn't match the currently active, this is invalid.
# Treat this as an O.
if slot_key != cur_key:
if cur_key is not None:
slots.append("{}:{}-{}".format(cur_key, start_ind, i))
cur_key = None
continue
# After the loop, add any oongoing slots
if cur_key is not None:
slots.append("{}:{}-{}".format(cur_key, start_ind, len(slot_labels)))
return slots
# Perform evaluation
if task == "intent":
if args.dump_outputs:
pred_labels = [eval_dataloader.dataset.intent_idx_to_label.get(p) for p in pred]
json.dump(pred_labels, open(args.output_dir + "outputs.json", "w+"))
return sum(p == t for p, t in zip(pred, true)) / len(pred)
elif task == "slot":
pred_slots = [_extract(e) for e in pred]
true_slots = [_extract(e) for e in true]
if args.dump_outputs:
json.dump(pred_slots, open(args.output_dir + "outputs.json", "w+"))
slot_types = set([slot.split(":")[0] for row in true_slots for slot in row])
slot_type_f1_scores = []
for slot_type in slot_types:
predictions_for_slot = [
[p for p in prediction if slot_type in p] for prediction in pred_slots
]
labels_for_slot = [
[l for l in label if slot_type in l] for label in true_slots
]
proposal_made = [len(p) > 0 for p in predictions_for_slot]
has_label = [len(l) > 0 for l in labels_for_slot]
prediction_correct = [
prediction == label for prediction, label in zip(predictions_for_slot, labels_for_slot)
]
true_positives = sum([
int(proposed and correct)
for proposed, correct in zip(proposal_made, prediction_correct)
])
num_predicted = sum([int(proposed) for proposed in proposal_made])
num_to_recall = sum([int(hl) for hl in has_label])
precision = true_positives / (1e-5 + num_predicted)
recall = true_positives / (1e-5 + num_to_recall)
f1_score = 2 * precision * recall / (1e-5 + precision + recall)
slot_type_f1_scores.append(f1_score)
return np.mean(slot_type_f1_scores)
elif task == "top":
if args.dump_outputs:
pred_labels = [(eval_dataloader.dataset.intent_idx_to_label[intent],
[eval_dataloader.dataset.slot_idx_to_label[e] for e in slots]) for intent, slots in pred]
json.dump(pred_labels, open(args.output_dir + "outputs.json", "w+"))
return sum(p == t for p, t in zip(pred, true)) / len(pred)
def mask_tokens(inputs, tokenizer, mlm_probability=0.15):
""" Prepare masked tokens inputs/labels for masked language modeling: 80% MASK, 10% random, 10% original. """
labels = inputs.clone()
# We sample a few tokens in each sequence for masked-LM training (with probability args.mlm_probability defaults to 0.15 in Bert/RoBERTa)
probability_matrix = torch.full(labels.shape, mlm_probability)
# special_tokens_mask = [tokenizer.get_special_tokens_mask(val, already_has_special_tokens=True) for val in labels.tolist()]
probability_matrix.masked_fill_(torch.tensor(labels == 0, dtype=torch.bool), value=0.0)
masked_indices = torch.bernoulli(probability_matrix).bool()
labels[~masked_indices] = -1 # We only compute loss on masked tokens
# 80% of the time, we replace masked input tokens with tokenizer.mask_token ([MASK])
indices_replaced = torch.bernoulli(torch.full(labels.shape, 0.8)).bool() & masked_indices
inputs[indices_replaced] = tokenizer.token_to_id("[MASK]")
# 10% of the time, we replace masked input tokens with random word
indices_random = torch.bernoulli(torch.full(labels.shape, 0.5)).bool() & masked_indices & ~indices_replaced
random_words = torch.randint(tokenizer.get_vocab_size(), labels.shape, dtype=torch.long)
inputs[indices_random] = random_words[indices_random].cuda()
# The rest of the time (10% of the time) we keep the masked input tokens unchanged
return inputs, labels
def train(args, rep):
# Set random seed
random.seed(args.seed)
np.random.seed(args.seed)
torch.manual_seed(args.seed)
# Rename output dir based on arguments
if args.output_dir == "":
cwd = os.getcwd()
base = args.model_name_or_path.split("/")[-1]
model_type = "_example" if args.example else "_linear"
data_path = '_' + '_'.join(args.train_data_path.split("/")[-2:]).replace(".csv", "")
mlm_on = "_mlmtrain" if args.mlm_data_path == "" or args.mlm_data_path == args.train_data_path else "_mlmfull"
mlm_pre = "_mlmpre" if args.mlm_pre else ""
mlm_dur = "_mlmdur" if args.mlm_during else ""
observer = "_observer" if args.use_observers else ""
name = base + model_type + data_path + mlm_on + mlm_pre + mlm_dur + observer + "_v{}".format(rep)
args.output_dir = os.path.join(cwd, "checkpoints", name)
if not os.path.exists(args.output_dir):
os.makedirs(args.output_dir)
elif args.num_epochs == 0:
# This means we're evaluating. Don't create the directory.
pass
else:
raise Exception("Directory {} already exists".format(args.output_dir))
# Dump arguments to the checkpoint directory, to ensure reproducability.
if args.num_epochs > 0:
json.dump(args.__dict__, open(os.path.join(args.output_dir, 'args.json'), "w+"))
torch.save(args, os.path.join(args.output_dir, "run_args"))
# Configure tensorboard writer
tb_writer = SummaryWriter(log_dir=args.output_dir)
# Configure tokenizer
token_vocab_name = os.path.basename(args.token_vocab_path).replace(".txt", "")
tokenizer = BertWordPieceTokenizer(args.token_vocab_path,
lowercase=args.do_lowercase)
tokenizer.enable_padding(length=args.max_seq_length)
if args.num_epochs > 0:
tokenizer.save(args.output_dir)
# Data readers
if args.task == "intent":
dataset_initializer = IntentDataset
elif args.task == "slot":
dataset_initializer = SlotDataset
elif args.task == "top":
dataset_initializer = TOPDataset
else:
raise ValueError("Not a valid task type: {}".format(args.task))
train_dataset = dataset_initializer(args.train_data_path,
tokenizer,
args.max_seq_length,
token_vocab_name)
if args.mlm_data_path != '':
mlm_dataset = dataset_initializer(args.mlm_data_path,
tokenizer,
args.max_seq_length,
token_vocab_name)
else:
mlm_dataset = train_dataset
val_dataset = dataset_initializer(args.val_data_path,
tokenizer,
512,
token_vocab_name) if args.val_data_path else None
test_dataset = dataset_initializer(args.test_data_path,
tokenizer,
512,
token_vocab_name)
# Data loaders
train_dataloader = DataLoader(dataset=train_dataset,
batch_size=args.train_batch_size,
shuffle=True,
pin_memory=True)
mlm_dataloader = DataLoader(dataset=mlm_dataset,
batch_size=args.train_batch_size,
shuffle=True,
pin_memory=True)
val_dataloader = DataLoader(dataset=val_dataset,
batch_size=1,
pin_memory=True) if val_dataset else None
test_dataloader = DataLoader(dataset=test_dataset,
batch_size=1,
pin_memory=True)
# Load model
if args.task == "intent":
if args.example:
model = ExampleIntentBertModel(args.model_name_or_path,
dropout=args.dropout,
num_intent_labels=len(train_dataset.intent_label_to_idx),
use_observers=args.use_observers)
else:
model = IntentBertModel(args.model_name_or_path,
dropout=args.dropout,
num_intent_labels=len(train_dataset.intent_label_to_idx),
use_observers=args.use_observers)
elif args.task == "slot":
model = SlotBertModel(args.model_name_or_path,
dropout=args.dropout,
num_slot_labels=len(train_dataset.slot_label_to_idx))
elif args.task == "top":
model = JointSlotIntentBertModel(args.model_name_or_path,
dropout=args.dropout,
num_intent_labels=len(train_dataset.intent_label_to_idx),
num_slot_labels=len(train_dataset.slot_label_to_idx))
else:
raise ValueError("Cannot instantiate model for task: {}".format(args.task))
if torch.cuda.is_available():
model.to(args.device)
# Initialize MLM model
if args.mlm_pre or args.mlm_during:
pre_model = BertPretrain(args.model_name_or_path)
mlm_optimizer = AdamW(pre_model.parameters(), lr=args.learning_rate, eps=args.adam_epsilon)
if torch.cuda.is_available():
pre_model.to(args.device)
# MLM Pre-train
if args.mlm_pre and args.num_epochs > 0:
# Maintain most recent score per label.
for epoch in trange(3, desc="Pre-train Epochs"):
pre_model.train()
epoch_loss = 0
num_batches = 0
for batch in tqdm(mlm_dataloader):
num_batches += 1
# Train model
if "input_ids" in batch:
inputs, labels = mask_tokens(batch["input_ids"].cuda(), tokenizer)
else:
inputs, labels = mask_tokens(batch["ctx_input_ids"].cuda(), tokenizer)
loss = pre_model(inputs, labels)
if args.grad_accum > 1:
loss = loss / args.grad_accum
loss.backward()
epoch_loss += loss.item()
if args.grad_accum <= 1 or num_batches % args.grad_accum == 0:
if args.max_grad_norm > 0:
torch.nn.utils.clip_grad_norm_(pre_model.parameters(), args.max_grad_norm)
mlm_optimizer.step()
pre_model.zero_grad()
LOGGER.info("Epoch loss: {}".format(epoch_loss / num_batches))
# Transfer BERT weights
model.bert_model = pre_model.bert_model.bert
# Train
optimizer = AdamW(model.parameters(), lr=args.learning_rate, eps=args.adam_epsilon)
global_step = 0
metrics_to_log = {}
best_score = -1
patience = 0
for epoch in trange(args.num_epochs, desc="Epoch"):
model.train()
epoch_loss = 0
num_batches = 0
for batch in tqdm(train_dataloader):
num_batches += 1
global_step += 1
# Transfer to gpu
if torch.cuda.is_available():
for key, val in batch.items():
if type(batch[key]) is list:
continue
batch[key] = batch[key].to(args.device)
# Train model
if args.task == "intent":
if args.example:
examples = retrieve_examples(train_dataset, batch["intent_label"], batch["ind"], task="intent")
_, intent_loss = model(input_ids=batch["input_ids"],
attention_mask=batch["attention_mask"],
token_type_ids=batch["token_type_ids"],
intent_label=batch["intent_label"],
example_input=examples["input_ids"],
example_mask=examples["attention_mask"],
example_token_types=examples["token_type_ids"],
example_intents=examples["intent_label"])
else:
_, intent_loss = model(input_ids=batch["input_ids"],
attention_mask=batch["attention_mask"],
token_type_ids=batch["token_type_ids"],
intent_label=batch["intent_label"])
if args.grad_accum > 1:
intent_loss = intent_loss / args.grad_accum
intent_loss.backward()
epoch_loss += intent_loss.item()
elif args.task == "slot":
_, slot_loss = model(input_ids=batch["input_ids"],
attention_mask=batch["attention_mask"],
token_type_ids=batch["token_type_ids"],
slot_labels=batch["slot_labels"])
if args.grad_accum > 1:
slot_loss = slot_loss / args.grad_accum
slot_loss.backward()
epoch_loss += slot_loss.item()
elif args.task == "top":
_, _, loss = model(input_ids=batch["input_ids"],
attention_mask=batch["attention_mask"],
token_type_ids=batch["token_type_ids"],
intent_label=batch["intent_label"],
slot_labels=batch["slot_labels"])
if args.grad_accum > 1:
loss = loss / args.grad_accum
loss.backward()
epoch_loss += loss.item()
if args.grad_accum <= 1 or num_batches % args.grad_accum == 0:
if args.max_grad_norm > 0:
torch.nn.utils.clip_grad_norm_(model.parameters(), args.max_grad_norm)
optimizer.step()
model.zero_grad()
LOGGER.info("Epoch loss: {}".format(epoch_loss / num_batches))
# Evaluate and save checkpoint
score = evaluate(model, val_dataloader, train_dataloader, tokenizer, task=args.task, example=args.example,
device=args.device, args=args)
metrics_to_log["eval_score"] = score
LOGGER.info("Task: {}, score: {}---".format(args.task,
score))
if score < best_score:
patience += 1
else:
patience = 0
if score > best_score:
LOGGER.info("New best results found for {}! Score: {}".format(args.task,
score))
torch.save(model.state_dict(), os.path.join(args.output_dir, "model.pt"))
torch.save(optimizer.state_dict(), os.path.join(args.output_dir, "optimizer.pt"))
best_score = score
for name, val in metrics_to_log.items():
tb_writer.add_scalar(name, val, global_step)
if patience >= args.patience:
LOGGER.info("Stopping early due to patience")
break
# Run MLM during training
if args.mlm_during:
pre_model.train()
epoch_loss = 0
num_batches = 0
for batch in tqdm(mlm_dataloader):
num_batches += 1
# Train model
if "input_ids" in batch:
inputs, labels = mask_tokens(batch["input_ids"].cuda(), tokenizer)
else:
inputs, labels = mask_tokens(batch["ctx_input_ids"].cuda(), tokenizer)
loss = pre_model(inputs, labels)
if args.grad_accum > 1:
loss = loss / args.grad_accum
loss.backward()
epoch_loss += loss.item()
if args.grad_accum <= 1 or num_batches % args.grad_accum == 0:
if args.max_grad_norm > 0:
torch.nn.utils.clip_grad_norm_(pre_model.parameters(), args.max_grad_norm)
mlm_optimizer.step()
pre_model.zero_grad()
LOGGER.info("MLMloss: {}".format(epoch_loss / num_batches))
# Evaluate on test set
LOGGER.info("Loading up best model for test evaluation...")
model.load_state_dict(torch.load(os.path.join(args.output_dir, "model.pt")))
score = evaluate(model, test_dataloader, train_dataloader, tokenizer, task=args.task, example=args.example,
device=args.device, args=args)
print("Best result for {}: Score: {}".format(args.task, score))
tb_writer.add_scalar("final_test_score", score, global_step)
tb_writer.close()
return score
if __name__ == "__main__":
args = read_args()
print(args)
scores = []
seeds = [33, 42, 19, 55, 34, 63]
for i in range(args.repeat):
if args.num_epochs > 0:
args.output_dir = ""
args.seed = seeds[i] if i < len(seeds) else random.randint(1, 999)
scores.append(train(args, i))
print("Average score so far:", np.mean(scores))
print(scores)
print(np.mean(scores), max(scores), min(scores))