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<html><head>
<meta charset="utf-8">
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<title>Alex Felmeister</title>
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<a class="navbar-brand" href="index.html"><img src="images/DragonIcon_Blue_HEX.png">Alex S. Felmeister</a>
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<h4>News and Upcoming Activity</h4>
<h5>2015</h5>
<ul class="list-group">
<li class="list-group-item"><h5>Special Issue Invite in BMC Genomics</h5>
<p>Invited to expand IEEE conference paper to full journal article in a special issue of BMC Genomics</p>
<p><i>This is a first!</i></p>
</li>
<li class="list-group-item">
<h5>Abstract Accepted for Talk</h5>
<p>2016 Joint Summits on Translational Science | AMIA in San Francisco, March 22, 2016.</p>
<p><em>Bringing Genomes Back to Biology: How Integration of Public Genomic Data Sets with a Biorepository Translate Genomic Discoveries into Biological Insight<em></p>
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<h5> Conference Paper Presentation</h5>
<p>
Felmeister AS, Rivera TJ, Masino AJ, Resnick AC, Pennington JW. <em><b>Scalable Biobanking: A Modular Electronic Honest Broker and Biorepository for Integrated Clinical, Specimen and Genomic Research.</b></em> In: IEEE International Conference on Bioinformatics and Biomedicine (BIBM). Bethesda, MD; 2015:484-490. doi:10.1109/BIBM.2015.7359732.</p>
<a href="http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=7359732&isnumber=7359638">Direct URL</a>
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<h5>Open Source Biorepository Portal Toolkit Project Launched</h5>
<p>Information page and demonstration of open source project supporting biorepository work. --- September 24, 2015</p>
<p><a href="http://www.brptoolkit.com">www.brptoolkit.com</a></p>
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<h5>Poster Presentation</h5>
<p>8th Annual Mid-Atlantic Healthcare Informatics Symposium, Phiadelphia, PA --- October 23, 2015</p>
<p><em>Bringing Genomes Back to Biology Integration of the CBioPortal with a multi-institution brain tumor biorepository resource for open research across heterogeneous sources of phenotypic, biologic and genomic information.</em></p>
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<p>
First Peer Reviewed Conference Paper Accepted to IEEE Bioinformatics Biomedical Informatics (BIBM)</p>
</li>
<li class="list-group-item"><h5>PhD Program Milestone</h5>
<p>Completed all first year requirements and method classes! --- June, 2015</p></li>
<li class="list-group-item">
<h5>May Was Brain Tumor Awareness Month
<br>
<a href="http://blog.research.chop.edu/award-celebrates-chop-experts-brain-tumor-research/" target="_blank">Award Celebrates CHOP Expert’s, Tom Curran, Ph.D., Brain Tumor Research</a>
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<h5>Presenter</h5>
<p>REDCap Consortium Webinar --- May 6, 2015</p>
<p>Presentation Title: Utilizing an open source portal and electronic honest broker to annotate biospecimens with REDCap form data asynchronously and longitudinally.</p>
</li>
<li class="list-group-item"><h5>
Presenter - New Format Peer Guided Workshop</h5>
<p>AMIA- Joint Summits on Translational Science, San Francisco CA --- March 26, 2015</p>
<p>Abstract Title: Catalyzing Tissue-Based Brain Tumor Research Using Integrated Tumor Versus Somatic Variant Data.</p></li>
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<h5>2014</h5>
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<li class="list-group-item"><h5>Panelist</h5>
<p>CI4CC Cancer Informatics for Cancer Centers - Fall Meeting, Sonoma CA --- November 11,2014<p>
<p>Panel Subject: Biospecimen Informatics for the Modern Cancer Center.</p></li>
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<h4 class="modal-title" id="myModalLabel">Scalable Biobanking: A Modular Electronic Honest Broker and Biorepository
for Integrated Clinical, Specimen and Genomic Research</h4>
<h5>A Data Driven and Integrative Approach to Asychronous, Longitudinal and
Collaborative Specimen and Genomic Research</h5>
<p class="text-justify">
<i>Abstract</i>— Biorepository research has introduced significant challenges
to biomedical informatics systems design and implementation. We take a
best-of-breed system integrative approach to finding solutions to administer
a biobank operationally, use a biobank scientifically and integrate clinical,
specimen and genomic data. We introduce an electronic Honest Broker (eHB)
and Biorepository Portal (BRP) open source project that, in tandem, allow
for integration of data on the input and output while protecting subject
privacy, a primary issue in research and healthcare informatics. Research
data management systems like REDCap and our proprietary laboratory information
management system (LIMS) are used as best-of- breed client systems and
integrated with downstream genomic analyses. Taking this honest brokered
system-client based, modular approach to biorepository research, we allow
for data and specimens to be associated with a biorepository subject at
anytime point asynchronously, lowering the bar to develop new research
projects based on scientific merit and having a future proofed specimen
set for collaborative advanced genomic and tissue research yet to be established.
<br>
<a href="http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=7359732&isnumber=7359638 " target="_blank">View on IEEE Xplore</a>
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<h4 class="modal-title" id="myModalLabel">The Brain Tumor Team at CHOP</h4>
<p class="text-justify">May is Brain Tumor Awareness Month. The Children's Brain Tumor Tissue
Consortium (CBTTC) is the hub of new brain tumor research at CHOP and across
multiple institutions. Here is a photo of many of the folks that research
and are involved in the care of these kids with this terrible disease.
The link below includes a webinar given by some of the lead clinicians
and scientists behind the consortium and neurosurgery at CHOP. My team
is involved in building the informatics infrastructure around the CBTTC.
<br>
<a href="http://blog.research.chop.edu/award-celebrates-chop-experts-brain-tumor-research/" target="_blank">Award Celebrates CHOP Expert’s Brain Tumor Research</a>
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<a href="http://www.chop.edu/events/webinar-chop-experts-present-pediatric-brain-tumor-research#.VVoDe1VVhBd" target="_blank">Webinar on Collaborative Brain Tumor Research May 15 at 3:00PM EST</a>
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