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add genome rendered images to Gene page #244

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nathandunn opened this issue Mar 21, 2017 · 2 comments
Open

add genome rendered images to Gene page #244

nathandunn opened this issue Mar 21, 2017 · 2 comments
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@nathandunn
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Going to use the visualization server to generate images on the gene page initially. This will let us know what data is still missing or other potential issues.

http://dev.alliancegenome.org:8891/?url=http%3A%2F%2Fbw.scottcain.net%2Fjbrowse%2F%3Fdata%3Ddata%252FCaenorhabditis%2520elegans%26loc%3DIV%253A12893065..12894996%26tracks%3DAll%2520Genes%26highlight%3D%26screenshot%3Dp20o0r0n0u0b1m111s000000z1~0h2500i0q0d0&format=PNG&delay=16000&width=600&height=300&zoom=1&quality=0.7

@nathandunn nathandunn added this to the 0.6.0 milestone Mar 21, 2017
@nathandunn nathandunn self-assigned this Mar 21, 2017
@nathandunn
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nathandunn commented Mar 21, 2017

  • need chromosome, species, symbol, fmin / fmax

    • default fmin /fmax = 0/100
    • attempt with just symbol
  • remove track labels tracklabels=0 (update jbrowse version)?

  • need to get passed in or most recent assembly

@nathandunn
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nathandunn commented Mar 24, 2017

Works using these in conjunction with these branches:

Working on it here: https://github.com/nathandunn/agr/tree/test_jbrowse_tempfix

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