pull-request.yml

# This is a basic workflow to help you get started with Actions

name: Pull Request

# Controls when the workflow will run
on:
  # Triggers the workflow on pull request events but only for the master branch
  pull_request:
    branches: [ main ]

  # Allows you to run this workflow manually from the Actions tab
#  workflow_dispatch:

permissions:
  contents: read

# A workflow run is made up of one or more jobs that can run sequentially or in parallel
jobs:
  # This workflow contains a single job called "build"
  build:
    # The type of runner that the job will run on
    runs-on: ubuntu-latest
    defaults:
      run:
        shell: bash -el {0}

    # Steps represent a sequence of tasks that will be executed as part of the job
    steps:
      # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
    - uses: actions/checkout@1d96c772d19495a3b5c517cd2bc0cb401ea0529f # v4
      with:
        fetch-depth: 0  # Shallow clones should be disabled for a better relevancy of analysis
    - name: Install dependencies
      # https://github.com/conda-incubator/setup-miniconda
      uses: conda-incubator/setup-miniconda@3b0f2504dd76ef23b6d31f291f4913fb60ab5ff3 # v2
      with:
        channels: defaults,conda-forge,joshburt
        auto-activate-base: true
        activate-environment: github.action
        environment-file: environment.github.yml
    - name: Conda Info
      run: |
        conda info
    - name: Anaconda Project Setup
      run: |
        anaconda-project prepare --env-spec development
    - name: Activate Anaconda Project Environment
      run: |
        conda activate envs/development
    - name: Unit Tests
      run: |
        anaconda-project run test:unit
    - name: Generate Coverage Report
      run: |
        anaconda-project run coverage
    - name: SonarCloud Scan
      uses: sonarsource/sonarcloud-github-action@master
      env:
        GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
        SONAR_TOKEN: ${{ secrets.SONAR_TOKEN }}