diff --git a/tests/test_repeats.py b/tests/test_repeats.py index 9e572b41..8ad48965 100644 --- a/tests/test_repeats.py +++ b/tests/test_repeats.py @@ -2,7 +2,6 @@ from hgvs.assemblymapper import AssemblyMapper from parameterized import parameterized -import time import pytest import hgvs import hgvs.dataproviders @@ -19,7 +18,8 @@ def to_hgvs_repeat(chrom_ac, fs: VariantCoords , ra: RepeatAnalyser): """ return f"{chrom_ac}:g.{fs.start+1}_{fs.end}{ra.alt_str}" - + +@pytest.mark.skip(reason="too data hungry") class TestHGVSExamples(unittest.TestCase): """ The variants in this class are taken from the HGVS nomenclature page about repeats https://hgvs-nomenclature.org/stable/recommendations/DNA/repeated/ @@ -114,6 +114,7 @@ def test_ATXN7_repeat(self): # invalid HGVS, due to the shuffle-able bases, but comes pretty close to what HGVS recommends. assert to_hgvs_repeat(var_g.ac, fs, ra2) == 'NC_000003.12:g.63912685_63912716G[1]C[1]AGC[13]' +@pytest.mark.skip(reason="too data hungry") class TestRepeats(unittest.TestCase): @classmethod @@ -214,6 +215,8 @@ def test_large_variant(self): ra = RepeatAnalyser(fs) assert not ra.is_repeat + +class TestRepeatMethods: @parameterized.expand( [