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setup.py
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setup.py
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from setuptools import setup, find_packages
with open("doc/description.txt") as f:
long_description = f.read()
setup(
license = "Apache License 2.0 (http://www.apache.org/licenses/LICENSE-2.0)",
long_description = long_description,
use_scm_version = True,
zip_safe = True,
author="UTA Contributors",
author_email="[email protected]",
description="Universal Transcript Archive",
name="uta",
packages=find_packages(),
url="https://github.com/biocommons/uta",
classifiers = [
"Development Status :: 3 - Alpha",
"Intended Audience :: Developers",
"Intended Audience :: Healthcare Industry",
"Intended Audience :: Science/Research",
"License :: OSI Approved :: Apache Software License",
"Operating System :: OS Independent",
"Programming Language :: Python :: 3",
"Programming Language :: Python",
"Topic :: Database :: Front-Ends",
"Topic :: Scientific/Engineering :: Bio-Informatics",
"Topic :: Scientific/Engineering :: Medical Science Apps.",
],
keywords = [
"bioinformatics",
"computational biology",
"genome variants",
"genome variation",
"genomic variants",
"genomic variation",
"genomics",
"hgvs",
],
entry_points = {
"console_scripts": [
"uta = uta.cli:main",
],
},
install_requires=[
"attrs",
"biocommons.seqrepo",
"biopython>=1.69",
"bioutils",
"colorlog",
"configparser",
"docopt",
"eutils>=0.3.2",
"nose",
"prettytable",
"psycopg2-binary",
"pytz",
"recordtype",
"sqlalchemy",
"uta-align",
],
setup_requires = [
"nose",
"setuptools_scm==1.11.1",
"sphinx",
"sphinxcontrib-fulltoc",
"wheel",
],
tests_require=[
"coverage",
"testing.postgresql",
"wheel", # to suppress warnings from build env
],
)
# <LICENSE>
# Copyright 2021 UTA Contributors (https://github.com/biocommons/uta)
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
# </LICENSE>