From e8a35a067e54f76fff81d5a63c971bfbcb633bd3 Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Sun, 12 Nov 2023 14:17:03 +0000
Subject: [PATCH 1/5] build(deps): bump sigstore/cosign-installer from 3.1.2 to
 3.2.0 (#157)

Bumps [sigstore/cosign-installer](https://github.com/sigstore/cosign-installer) from 3.1.2 to 3.2.0.
- [Release notes](https://github.com/sigstore/cosign-installer/releases)
- [Commits](https://github.com/sigstore/cosign-installer/compare/11086d25041f77fe8fe7b9ea4e48e3b9192b8f19...1fc5bd396d372bee37d608f955b336615edf79c8)

---
updated-dependencies:
- dependency-name: sigstore/cosign-installer
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
---
 .github/workflows/build.yml  | 2 +-
 .github/workflows/deploy.yml | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/build.yml b/.github/workflows/build.yml
index 9cbd592..0eac6f0 100644
--- a/.github/workflows/build.yml
+++ b/.github/workflows/build.yml
@@ -43,7 +43,7 @@ jobs:
         run: |
           poetry export -o requirements.txt
       - name: install cosign
-        uses: sigstore/cosign-installer@11086d25041f77fe8fe7b9ea4e48e3b9192b8f19
+        uses: sigstore/cosign-installer@1fc5bd396d372bee37d608f955b336615edf79c8
       - name: verify base images
         run: |
           cosign dockerfile verify \
diff --git a/.github/workflows/deploy.yml b/.github/workflows/deploy.yml
index f023bd0..bb58693 100644
--- a/.github/workflows/deploy.yml
+++ b/.github/workflows/deploy.yml
@@ -25,7 +25,7 @@ jobs:
       - name: checkout project
         uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11
       - name: install cosign
-        uses: sigstore/cosign-installer@11086d25041f77fe8fe7b9ea4e48e3b9192b8f19
+        uses: sigstore/cosign-installer@1fc5bd396d372bee37d608f955b336615edf79c8
       - name: verify rwalk image
         run: |
           cosign verify \

From 73d71348c7a02dc563659386958600304648167e Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Sun, 19 Nov 2023 09:32:01 +0000
Subject: [PATCH 2/5] build(deps): bump docker/build-push-action from 5.0.0 to
 5.1.0 (#158)

Bumps [docker/build-push-action](https://github.com/docker/build-push-action) from 5.0.0 to 5.1.0.
- [Release notes](https://github.com/docker/build-push-action/releases)
- [Commits](https://github.com/docker/build-push-action/compare/0565240e2d4ab88bba5387d719585280857ece09...4a13e500e55cf31b7a5d59a38ab2040ab0f42f56)

---
updated-dependencies:
- dependency-name: docker/build-push-action
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
---
 .github/workflows/build.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/build.yml b/.github/workflows/build.yml
index 0eac6f0..452268f 100644
--- a/.github/workflows/build.yml
+++ b/.github/workflows/build.yml
@@ -67,7 +67,7 @@ jobs:
           images: ${{ env.IMAGE_NAME }}
       - name: build rwalk (devel)
         id: docker
-        uses: docker/build-push-action@0565240e2d4ab88bba5387d719585280857ece09
+        uses: docker/build-push-action@4a13e500e55cf31b7a5d59a38ab2040ab0f42f56
         with:
           context: .
           push: true

From 2890f8f3f57a0bd0a5662b6b1fac71752af7c2d5 Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Fri, 1 Dec 2023 07:04:03 +0000
Subject: [PATCH 3/5] build(deps): bump the poetry group with 4 updates (#159)

Bumps the poetry group with 4 updates: [pandas](https://github.com/pandas-dev/pandas), [numpy](https://github.com/numpy/numpy), [dash](https://github.com/plotly/dash) and [scipy](https://github.com/scipy/scipy).


Updates `pandas` from 2.1.2 to 2.1.3
- [Release notes](https://github.com/pandas-dev/pandas/releases)
- [Commits](https://github.com/pandas-dev/pandas/compare/v2.1.2...v2.1.3)

Updates `numpy` from 1.26.1 to 1.26.2
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)
- [Commits](https://github.com/numpy/numpy/compare/v1.26.1...v1.26.2)

Updates `dash` from 2.14.1 to 2.14.2
- [Release notes](https://github.com/plotly/dash/releases)
- [Changelog](https://github.com/plotly/dash/blob/dev/CHANGELOG.md)
- [Commits](https://github.com/plotly/dash/compare/v2.14.1...v2.14.2)

Updates `scipy` from 1.11.3 to 1.11.4
- [Release notes](https://github.com/scipy/scipy/releases)
- [Commits](https://github.com/scipy/scipy/compare/v1.11.3...v1.11.4)

---
updated-dependencies:
- dependency-name: pandas
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: poetry
- dependency-name: numpy
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: poetry
- dependency-name: dash
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: poetry
- dependency-name: scipy
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: poetry
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
---
 poetry.lock    | 196 +++++++++++++++++++++++++------------------------
 pyproject.toml |   8 +-
 2 files changed, 104 insertions(+), 100 deletions(-)

diff --git a/poetry.lock b/poetry.lock
index 422a6eb..9504624 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -1,4 +1,4 @@
-# This file is automatically @generated by Poetry 1.6.1 and should not be changed by hand.
+# This file is automatically @generated by Poetry 1.7.1 and should not be changed by hand.
 
 [[package]]
 name = "ansi2html"
@@ -137,13 +137,13 @@ files = [
 
 [[package]]
 name = "dash"
-version = "2.14.1"
+version = "2.14.2"
 description = "A Python framework for building reactive web-apps. Developed by Plotly."
 optional = false
 python-versions = ">=3.6"
 files = [
-    {file = "dash-2.14.1-py3-none-any.whl", hash = "sha256:ce440ef7416945c9daa8274948483a0aac928a4fec768c0384fd4e9a6196eaf2"},
-    {file = "dash-2.14.1.tar.gz", hash = "sha256:93dc9d665ec5d3720647d4cef4520a1c7cd1bde57e893ffeb7e6cd59781d3294"},
+    {file = "dash-2.14.2-py3-none-any.whl", hash = "sha256:8e1a280f1c7be0714825f04786beab41d40752095e116204e64b13ac978b654d"},
+    {file = "dash-2.14.2.tar.gz", hash = "sha256:602e7b0047cc9c48a81244377b812e79198678ef759a0039dadfe81023e20e96"},
 ]
 
 [package.dependencies]
@@ -395,43 +395,47 @@ test = ["pytest (>=7.2)", "pytest-cov (>=4.0)"]
 
 [[package]]
 name = "numpy"
-version = "1.26.1"
+version = "1.26.2"
 description = "Fundamental package for array computing in Python"
 optional = false
-python-versions = "<3.13,>=3.9"
-files = [
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-    {file = "scipy-1.11.3-cp39-cp39-musllinux_1_1_x86_64.whl", hash = "sha256:15f237e890c24aef6891c7d008f9ff7e758c6ef39a2b5df264650eb7900403c0"},
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-    {file = "scipy-1.11.3.tar.gz", hash = "sha256:bba4d955f54edd61899776bad459bf7326e14b9fa1c552181f0479cc60a568cd"},
+python-versions = ">=3.9"
+files = [
+    {file = "scipy-1.11.4-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:bc9a714581f561af0848e6b69947fda0614915f072dfd14142ed1bfe1b806710"},
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+    {file = "scipy-1.11.4-cp312-cp312-musllinux_1_1_x86_64.whl", hash = "sha256:ce7fff2e23ab2cc81ff452a9444c215c28e6305f396b2ba88343a567feec9660"},
+    {file = "scipy-1.11.4-cp312-cp312-win_amd64.whl", hash = "sha256:36750b7733d960d7994888f0d148d31ea3017ac15eef664194b4ef68d36a4a97"},
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+    {file = "scipy-1.11.4-cp39-cp39-macosx_12_0_arm64.whl", hash = "sha256:f3cd9e7b3c2c1ec26364856f9fbe78695fe631150f94cd1c22228456404cf1ec"},
+    {file = "scipy-1.11.4-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:d10e45a6c50211fe256da61a11c34927c68f277e03138777bdebedd933712fea"},
+    {file = "scipy-1.11.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:91af76a68eeae0064887a48e25c4e616fa519fa0d38602eda7e0f97d65d57937"},
+    {file = "scipy-1.11.4-cp39-cp39-musllinux_1_1_x86_64.whl", hash = "sha256:6df1468153a31cf55ed5ed39647279beb9cfb5d3f84369453b49e4b8502394fd"},
+    {file = "scipy-1.11.4-cp39-cp39-win_amd64.whl", hash = "sha256:ee410e6de8f88fd5cf6eadd73c135020bfbbbdfcd0f6162c36a7638a1ea8cc65"},
+    {file = "scipy-1.11.4.tar.gz", hash = "sha256:90a2b78e7f5733b9de748f589f09225013685f9b218275257f8a8168ededaeaa"},
 ]
 
 [package.dependencies]
@@ -743,4 +747,4 @@ testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "p
 [metadata]
 lock-version = "2.0"
 python-versions = ">=3.11,<3.13"
-content-hash = "d0f362e3c60c5d6357e4fa3cf259b645483fb3da9aefa54e45fedffc1773dc61"
+content-hash = "b8ffac5c0dfe04500fe05ceff2ea0f32546c9db37342a590d9ad0f335564279c"
diff --git a/pyproject.toml b/pyproject.toml
index c9df80b..ca16f20 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -7,12 +7,12 @@ license = "GPL-3.0-only"
 
 [tool.poetry.dependencies]
 python = ">=3.11,<3.13"
-pandas = "^2.1.2"
-numpy = "^1.26.1"
-dash = "^2.14.1"
+pandas = "^2.1.3"
+numpy = "^1.26.2"
+dash = "^2.14.2"
 networkx = "^3.2"
 gunicorn = "^21.2.0"
-scipy = "^1.11.3"
+scipy = "^1.11.4"
 dash-cytoscape = "^0.3.0"
 
 [tool.poetry.dev-dependencies]

From 50433d8678da20079feff60f3c0a729b73adb319 Mon Sep 17 00:00:00 2001
From: "github-actions[bot]"
 <41898282+github-actions[bot]@users.noreply.github.com>
Date: Fri, 1 Dec 2023 07:11:06 +0000
Subject: [PATCH 4/5] build(Dockerfile): bump python latest tag digest (#160)

Co-authored-by: andros21 <andros21@users.noreply.github.com>
---
 Dockerfile | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/Dockerfile b/Dockerfile
index f26231a..10991b1 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -20,7 +20,7 @@ RUN [".venv/bin/python3", "rwalker.py"]
 #  * Copy venv from st stage
 #  * Copy simulation data results from nd stage
 #
-FROM cgr.dev/chainguard/python:latest@sha256:b8ae05271a3ac82634033e938cac688a92952119197056865ffb76e8edf1c008
+FROM cgr.dev/chainguard/python:latest@sha256:ded184cec247b6d6e4dcd202442cee861691c0943f3df47eb92a3ef9fe98875e
 WORKDIR /home/nonroot
 COPY . .
 COPY --from=venv /home/nonroot/.venv .venv

From d0daf675377b053c59ab85af3d7eb9e69f790adb Mon Sep 17 00:00:00 2001
From: andros21 <andrea.ros21@murena.io>
Date: Thu, 9 Nov 2023 09:51:49 +0100
Subject: [PATCH 5/5] chore(build.yml): divide build process from sign process

best practices advice to isolate build process from deploy,
provenance, signing process
---
 .github/workflows/build.yml | 22 ++++++++++++++++------
 1 file changed, 16 insertions(+), 6 deletions(-)

diff --git a/.github/workflows/build.yml b/.github/workflows/build.yml
index 452268f..aaf179a 100644
--- a/.github/workflows/build.yml
+++ b/.github/workflows/build.yml
@@ -15,11 +15,6 @@ name: build rwalk
       - .github/workflows/digesta.yml
       - .github/dependabot.yml
 
-permissions:
-  contents: read
-  id-token: write
-  packages: write
-
 env:
   REGISTRY: ghcr.io
   IMAGE_NAME: ${{ github.repository }}
@@ -27,6 +22,11 @@ env:
 jobs:
   build:
     name: build rwalk
+    permissions:
+      contents: read
+      packages: write
+    outputs:
+      digest: ${{ steps.docker.outputs.digest }}
     runs-on: ubuntu-latest
     steps:
       - name: checkout project
@@ -85,9 +85,19 @@ jobs:
           curl -X GET http://localhost:8080 || (docker logs smoke_rwalk && exit 1)
           docker logs smoke_rwalk
           docker stop smoke_rwalk
+  cosign:
+    name: cosign rwalk
+    runs-on: ubuntu-latest
+    permissions:
+      id-token: write
+      packages: write
+    needs: build
+    steps:
+      - name: install cosign
+        uses: sigstore/cosign-installer@11086d25041f77fe8fe7b9ea4e48e3b9192b8f19
       - name: cosign rwalk
         run: |
-          cosign sign -y "${{ env.REGISTRY }}/${{ env.IMAGE_NAME }}@${{ steps.docker.outputs.digest }}"
+          cosign sign -y "${{ env.REGISTRY }}/${{ env.IMAGE_NAME }}@${{ needs.build.outputs.digest }}"
       - name: install crane
         uses: imjasonh/setup-crane@00c9e93efa4e1138c9a7a5c594acd6c75a2fbf0c
       - name: tag rwalk (latest)