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brcapaper2.md

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  name:  <unnamed>
   log:  /Users/arindambose/Documents/ann-brca-paper/annetal/R-codes/brcapa

per2.md log type: text opened on: 16 Oct 2014, 00:26:31

. . tab programtype1

ProgramType | 1 | Freq. Percent Cum. ------------+----------------------------------- N | 11 44.00 44.00 NS | 7 28.00 72.00 O | 2 8.00 80.00 S | 5 20.00 100.00 ------------+----------------------------------- Total | 25 100.00

. tab YrClosestto2008

YrClosestto | 2008 | Freq. Percent Cum. ------------+----------------------------------- 1992 | 1 4.00 4.00 2000 | 2 8.00 12.00 2001 | 1 4.00 16.00 2002 | 4 16.00 32.00 2003 | 4 16.00 48.00 2004 | 1 4.00 52.00 2005 | 2 8.00 60.00 2006 | 2 8.00 68.00 2007 | 3 12.00 80.00 No Data | 5 20.00 100.00 ------------+----------------------------------- Total | 25 100.00

. summarize CorrHRT brcaincidence2008 brcamortality2008

Variable |       Obs        Mean    Std. Dev.       Min        Max

-------------+-------------------------------------------------------- CorrHRT | 20 17.42 13.77513 2.5 46 brcainc2008 | 23 75.1 20.7219 22.4 99.7 brcamor2008 | 23 15.11304 3.565148 5.3 20.8

. tab corrhrt3

RECODE of | CorrHRT | Freq. Percent Cum. ------------+----------------------------------- Low Use | 6 30.00 30.00 High Use | 14 70.00 100.00 ------------+----------------------------------- Total | 20 100.00

. tabstat brcaincidence2008 brcamortality, by(corrhrt3) statistics(mean sd)

Summary statistics: mean, sd by categories of: corrhrt3 (RECODE of CorrHRT)

corrhrt3 | brcain8 brcamo8 ---------+-------------------- Low Use | 74.46 15.42 | 22.19894 4.808534 ---------+-------------------- High Use | 79.55714 16 | 20.33771 2.374869 ---------+-------------------- Total | 78.21579 15.84737 | 20.33605 3.046376

. kwallis brcaincidence2008, by(corrhrt3)

Kruskal-Wallis equality-of-populations rank test

+---------------------------+ | corrhrt3 | Obs | Rank Sum | |----------+-----+----------| | Low Use | 5 | 44.50 | | High Use | 14 | 145.50 | +---------------------------+

chi-squared = 0.259 with 1 d.f. probability = 0.6106

chi-squared with ties = 0.260 with 1 d.f. probability = 0.6103

. kwallis brcamortality2008, by(corrhrt3)

Kruskal-Wallis equality-of-populations rank test

+---------------------------+ | corrhrt3 | Obs | Rank Sum | |----------+-----+----------| | Low Use | 5 | 48.00 | | High Use | 14 | 142.00 | +---------------------------+

chi-squared = 0.034 with 1 d.f. probability = 0.8531

chi-squared with ties = 0.035 with 1 d.f. probability = 0.8518

. graph bar brcamortality2008, over(corrhrt3)

. . tabstat brcaincidence2008, by(hrtuserec) statistics(mean sd)

Summary for variables: brcaincidence2008 by categories of: hrtuserec (RECODE of hrtusenext (HRTUseNext))

hrtuserec | mean sd -----------+-------------------- Low Use | 78.8 15.4787 Medium Use | 95.675 4.40104 High Use | 83.53333 4.186487 46 | 89.4 . -----------+-------------------- Total | 86.40714 9.610128

. kwallis brcaincidence2008, by(hrtuserec)

Kruskal-Wallis equality-of-populations rank test

+-----------------------------+ | hrtuserec | Obs | Rank Sum | |------------+-----+----------| | Low Use | 3 | 16.00 | | Medium Use | 4 | 49.50 | | High Use | 6 | 29.00 | | 46 | 1 | 10.50 | +-----------------------------+

chi-squared = 9.189 with 3 d.f. probability = 0.0269

chi-squared with ties = 9.230 with 3 d.f. probability = 0.0264

. . . log close name: log: /Users/arindambose/Documents/ann-brca-paper/annetal/R-codes/brcapa

per2.md log type: text closed on: 16 Oct 2014, 00:26:34