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spmm_tfplot.m
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spmm_tfplot.m
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function [cfg] = spmm_tfplot(cfg, varargin)
% selcomp=1:size(varargin{1}.topo,2);
% Fs=varargin{1}.Fs; % am loc
% fs=varargin{1}.fs; % fm loc
xmin=cfg.xmin;
xmax=cfg.xmax;
ymin=cfg.ymin;
ymax=cfg.ymax;
clim=cfg.clim;
fF=cfg.fF;
if ~isfield(cfg,'pdf')
pdf=0;
else
pdf=cfg.pdf;
end
if ~isfield(cfg,'imse')
imse=0;
else
imse=cfg.imse;
end
if ~isfield(cfg,'ierp')
ierp=0;
else
ierp=cfg.ierp;
end
if ~isfield(cfg,'tf')
tf=0;
else
tf=cfg.tf;
end
dyadic=cfg.dyadic;
if ~isfield(cfg,'op')
op=0;
else
op=cfg.op;
end
if ~isfield(cfg,'F_inf')
cfg.F_inf=[];
end
if length(varargin)>1
sigbool=varargin{2}.sigbool;
try
nonparam=varargin{2}.nonparam;
catch
nonparam=0;
end
try
alpha=varargin{2}.alpha;
catch
alpha=[];
end
P=varargin{1}.P;
if ~ nonparam
tail=varargin{2}.tail;
if ~tail
P=2*P;
end
if sigbool(1)==1
if isempty(alpha)
P_masked=P<0.05;
else
P_masked=P< alpha;
end
end
if sigbool(2)==1
if isempty(alpha)
P_masked=P<0.01;
else
P_masked=P< alpha;
end
end
if sigbool(3)==1
if isempty(alpha)
P_masked=P<0.001;
else
P_masked=P< alpha;
end
end
if sigbool(4)==1 || sigbool(5)==1
try
fdr_roi=varargin{2}.fdr_roi;
catch
fdr_roi=[];
end
if isempty(fdr_roi)
if ~isfield(cfg,'fdr_dependence') || cfg.fdr_dependence==0
if sigbool(4)==1
[p_fdr,P_masked]=fdr(P,0.05);
end
if sigbool(5)==1
[p_fdr,P_masked]=fdr(P,0.01);
end
else
if sigbool(4)==1
[p_fdr,P_masked]=fdr(P,0.05,'nonParametric');
end
if sigbool(5)==1
[p_fdr,P_masked]=fdr(P,0.01,'nonParametric');
end
end
else
abs_roi=[xmin, xmax];
x_time=linspace(xmin,xmax, size(P,2));
if fdr_roi(1)<abs_roi(1)
fdr_roi(1)=abs_roi(1) ;
end
if fdr_roi(2)>abs_roi(2)
fdr_roi(2)=abs_roi(2) ;
end
fdr_id=(x_time-fdr_roi(1)>=0)&(x_time-fdr_roi(2)<=0);
fdr_time=x_time(fdr_id);
P_roi=P(:,fdr_id);
%[p_fdr,~]=fdr(P_roi);
P_masked=false(size(P));
if ~isfield(cfg,'fdr_dependence') || cfg.fdr_dependence==0
if sigbool(4)==1
[pi_fdr,Pi_masked]=fdr(P_roi,0.05);
end
if sigbool(5)==1
[pi_fdr,Pi_masked]=fdr(P_roi,0.01);
end
else
if sigbool(4)==1
[pi_fdr,Pi_masked]=fdr(P_roi,0.05,'nonParametric');
end
if sigbool(5)==1
[pi_fdr,Pi_masked]=fdr(P_roi,0.01,'nonParametric');
end
end
P_masked(:,fdr_id)=Pi_masked;
%p_plot(fdr_id,:)=p_fdr;
end
end
else
if isempty(alpha)
P_masked=P<0.05;
else
P_masked=P<alpha;
end
end
else
P_masked=zeros(size(varargin{1}.T));
end
%chs=cfg.chs;
if ~isfield(cfg, 'collapse')
collapse=0;
else
collapse=cfg.collapse;
end
if ~isfield(cfg, 'style')
cfg.style=1;
end
sptdata=varargin{1}.T;
% if isfield(varargin{1},'chlbls')
% lbls=varargin{1}.chlbls;
% else
% lbls=cellstr(string(1:size(sptdata,1)));
% end
clev=linspace (clim(1), clim(2),33);
load colormap_myhot;
%load colormap_myjet;
myhot=myhot(1:2:63,:);
%tint_jet=tint(jet,0.9);
tint_jet=jet;
if ~collapse
%T=shiftdim(sptdata(chid,:,:),1);
T=sptdata(:,:);
figure
%colormap(myjet)
switch cfg.style
case 1
%colormap(myjet);
colormap(tint_jet);
ham=imagesc([xmin, xmax],[ymin, ymax],T,clim);
case 2
colormap(myhot);
xs=linspace(xmin,xmax,size(T,2));
ys=linspace(ymin,ymax,size(T,1));
cx=repmat(xs,size(T,1),1);
cy=repmat(ys',1,size(T,2));
%contourf(cx,cy,T,clev);
ham=contourfcmap(cx,cy,T,clev,myhot, ...
'lo', [.9 .9 .9], ...
'hi', [.25 .25 .25], ...
'cbarloc', 'eastoutside');
end
%title(lbls{chid});
set(gca,'YDir','normal','FontSize',20,'FontName','Arial');
set(gca,'box','on');
if isfield(cfg,'title')
title(cfg.title,'FontSize',20);
end
if fF
if dyadic
ytickmin=ceil(ymin/1)*1;
ytickmax=floor(ymax/1)*1;
if (ymax-ytickmax)>0.1
halfypix=0.5*(ymax-ymin)/(size(T,1)-1);
ymaxp=ymax+halfypix;
ytick_value=[ytickmin:1:ytickmax ymaxp];
else
ytick_value=ytickmin:1:ytickmax;
end
set(gca,'YTick',ytick_value);
ylblval=2.^ytick_value;
ylblval(end)=round(ylblval(end),1);
set(gca,'YTickLabel',ylblval);
tickmin=ceil(xmin/1)*1;
tickmax=floor(xmax/1)*1;
if (xmax-tickmax)>0.1
halfxpix=0.5*(xmax-xmin)/(size(T,2)-1);
xmaxp=xmax+halfxpix;
xtick_value=[tickmin:1:tickmax xmaxp];
else
xtick_value=tickmin:1:tickmax;
end
% set(gca,'XTick',xtick_value);
% set(gca,'XTickLabel',2.^xtick_value);
set(gca,'XTick',xtick_value);
xlblval=2.^xtick_value;
%xlblval(end)=round(xlblval(end),1);
xlblval(end)=round(xlblval(end)); % reset it to previous line after drafting
set(gca,'XTickLabel',xlblval);
else
tickmin=ceil(xmin/10)*10;
tickmax=floor(xmax/10)*10;
set(gca,'XTick',tickmin:10:tickmax);
set(gca,'XTickLabel',tickmin:10:tickmax);
end
set(get(gca, 'XLabel'),'String','carrier frequency (Hz)','FontSize',20);
set(get(gca, 'YLabel'),'String','AM frequency (Hz)','FontSize',20);
hold on
ssy=linspace(xmin,ymax);
%ssx=zeros(size(ssy));
ssx=ssy;
plot(ssx,ssy,'k:','LineWidth',2);
else
if dyadic
ytickmin=ceil(ymin/1)*1;
ytickmax=floor(ymax/1)*1;
if (ymax-ytickmax)>0.1
halfypix=0.5*(ymax-ymin)/(size(T,1)-1);
ymaxp=ymax+halfypix;
ytick_value=[ytickmin:1:ytickmax ymaxp];
else
ytick_value=ytickmin:1:ytickmax;
end
set(gca,'YTick',ytick_value);
ylblval=2.^ytick_value;
ylblval(end)=round(ylblval(end),1);
set(gca,'YTickLabel',ylblval);
elseif ierp
ytickmin=ceil(ymin/1)*1;
ytickmax=floor(ymax/1)*1;
ytick_value=ytickmin:1:ytickmax;
set(gca,'YTick',ytick_value);
if ~isempty(cfg.F_inf)
for ii=1:size(cfg.F_inf,1)
ylblval{1,ii}=strcat(num2str(cfg.F_inf(ii,1)),':',num2str(cfg.F_inf(ii,2)));
end
end
set(gca,'YTickLabel',ylblval);
end
tickmin=ceil(xmin/500)*500;
tickmax=floor(xmax/500)*500;
set(gca,'XTick',tickmin:500:tickmax);
set(gca,'XTickLabel',tickmin:500:tickmax);
set(get(gca, 'XLabel'),'String','time (ms)','FontSize',20);
if ~imse && ~ierp
set(get(gca, 'YLabel'),'String','carrier frequency (Hz)','FontSize',20);
else
if imse
set(get(gca, 'YLabel'),'String','imse mode','FontSize',20);
elseif ierp
set(get(gca, 'YLabel'),'String','iERP mode','FontSize',20);
end
end
curr_xlim=get(gca,'xlim');
hold on
ssy=linspace(ymin,ymax);
ssx=zeros(size(ssy));
%ssx=ssy;
plot(ssx,ssy,'k:','LineWidth',2);
% delete after the 2012 tDCS WM project
ssx_m1100=-1100*ones(size(ssy));
plot(ssx_m1100,ssy,'k:','LineWidth',2);
ssx_m900=-900*ones(size(ssy));
plot(ssx_m900,ssy,'k:','LineWidth',2);
% delete after the binding WM project
ssx_1000=1000*ones(size(ssy));
plot(ssx_1000,ssy,'k:','LineWidth',2);
ssx_3000=3000*ones(size(ssy));
plot(ssx_3000,ssy,'k:','LineWidth',2);
set(gca,'xlim',curr_xlim);
end
if length(varargin)>1
xs=linspace(xmin,xmax,size(T,2));
ys=linspace(ymin,ymax,size(T,1));
cx=repmat(xs,size(T,1),1);
cy=repmat(ys',1,size(T,2));
maskch=P_masked(:,:);
% separate + & -
maskch_p=maskch & (T>0);
maskch_n=maskch & (T<0);
switch cfg.style
case 1
if ~op
contour(cx,cy,maskch_p,1,'w','LineWidth',3);
contour(cx,cy,maskch_n,1,'w','LineWidth',3);
else
maskch=maskch+0;
maskch(maskch==0)=0.3;
set(ham,'alphadata',maskch);
end
case 2
contour(cx,cy,maskch,1,'r','LineWidth',2);
end
end
old_pos=get(gcf,'position');
new_pos=old_pos;
new_pos(4)= old_pos(4)*1.1;
new_pos(2)= old_pos(2)*0.8;
set(gcf,'position',new_pos);
set(gcf,'position',[1,1,1.4,1.15].*get(gcf,'position'));
cax_pos=get(gca,'position');
amax_opos=get(ham.Parent,'position');
amax_npos=amax_opos;
amax_npos(3)=cax_pos(3);
amax_npos(1)=cax_pos(1);
set(ham.Parent,'position',amax_npos);
else
T=sptdata(2:end,:);
figure
subplot(9,1,1:8);
switch cfg.style
case 1
%colormap(myjet);
colormap(tint_jet);
ham=imagesc([xmin, xmax],[ymin, ymax],T,clim);
case 2
colormap(myhot);
xs=linspace(xmin,xmax,size(T,2));
ys=linspace(ymin,ymax,size(T,1));
cx=repmat(xs,size(T,1),1);
cy=repmat(ys',1,size(T,2));
%contourf(cx,cy,T,clev);
ham=contourfcmap(cx,cy,T,clev,myhot, ...
'lo', [.9 .9 .9], ...
'hi', [.25 .25 .25], ...
'cbarloc', 'eastoutside');
end
%title(lbls{chid});
set(gca,'YDir','normal','FontSize',20,'FontName','Arial');
set(gca,'box','on');
if isfield(cfg,'title')
title(cfg.title,'FontSize',20);
end
%colorbar
if fF
if dyadic
ytickmin=ceil(ymin/1)*1;
ytickmax=floor(ymax/1)*1;
if (ymax-ytickmax)>0.1
halfypix=0.5*(ymax-ymin)/(size(T,1)-1);
ymaxp=ymax+halfypix;
ytick_value=[ytickmin:1:ytickmax ymaxp];
else
ytick_value=ytickmin:1:ytickmax;
end
set(gca,'YTick',ytick_value);
ylblval=2.^ytick_value;
ylblval(end)=round(ylblval(end),1);
set(gca,'YTickLabel',ylblval);
tickmin=ceil(xmin/1)*1;
tickmax=floor(xmax/1)*1;
if (xmax-tickmax)>0.1
%xtick_value=[tickmin:1:tickmax xmax];
halfxpix=0.5*(xmax-xmin)/(size(T,2)-1);
xmaxp=xmax+halfxpix;
xtick_value=[tickmin:1:tickmax xmaxp];
else
xtick_value=tickmin:1:tickmax;
end
set(gca,'XTick',xtick_value);
%set(gca,'XTickLabel',2.^xtick_value);
set(gca,'XTickLabel',{});
%set(gca,'xlim',[xmin xmax]);
else
tickmin=ceil(xmin/10)*10;
tickmax=floor(xmax/10)*10;
set(gca,'XTick',tickmin:10:tickmax);
%set(gca,'XTickLabel',tickmin:10:tickmax);
set(gca,'XTickLabel',{});
%set(gca,'xlim',[xmin xmax]);
end
%set(get(gca, 'XLabel'),'String','frequency (Hz)','FontSize',14);
set(get(gca, 'YLabel'),'String','AM frequency (Hz)','FontSize',20);
hold on
ssy=linspace(xmin,ymax);
%ssx=zeros(size(ssy));
ssx=ssy;
plot(ssx,ssy,'k:','LineWidth',2);
else
if dyadic
ytickmin=ceil(ymin/1)*1;
ytickmax=floor(ymax/1)*1;
% if (ymax-ytickmax)>0.1
% ytick_value=[ytickmin:1:ytickmax ymax];
% else
% ytick_value=ytickmin:1:ytickmax;
% end
if (ymax-ytickmax)>0.1
halfypix=0.5*(ymax-ymin)/(size(T,1)-1);
ymaxp=ymax+halfypix;
ytick_value=[ytickmin:1:ytickmax ymaxp];
else
ytick_value=ytickmin:1:ytickmax;
end
set(gca,'YTick',ytick_value);
ylblval=2.^ytick_value;
ylblval(end)=round(ylblval(end),1);
set(gca,'YTickLabel',ylblval);
end
tickmin=ceil(xmin/500)*500;
tickmax=floor(xmax/500)*500;
set(gca,'XTick',tickmin:500:tickmax);
%set(gca,'XTickLabel',tickmin:500:tickmax);
set(gca,'XTickLabel',{});
%set(gca,'xlim',[xmin xmax]);
%set(get(gca, 'XLabel'),'String','Time (ms)','FontSize',14);
set(get(gca, 'YLabel'),'String','AM frequency (Hz)','FontSize',20);
xlimv=get(gca,'xlim');
hold on
ssy=linspace(ymin,ymax);
ssx=zeros(size(ssy));
%ssx=ssy;
plot(ssx,ssy,'k-','LineWidth',1);
% delete after the 2012 tDCS WM project
ssx_m1100=-1100*ones(size(ssy));
plot(ssx_m1100,ssy,'k:','LineWidth',2);
ssx_m900=-900*ones(size(ssy));
plot(ssx_m900,ssy,'k:','LineWidth',2);
% delete after the binding WM project
ssx_1000=1000*ones(size(ssy));
plot(ssx_1000,ssy,'k:','LineWidth',2);
ssx_3000=3000*ones(size(ssy));
plot(ssx_3000,ssy,'k:','LineWidth',2);
set (gca,'xlim',xlimv);
end
if length(varargin)>1
xs=linspace(xmin,xmax,size(T,2));
ys=linspace(ymin,ymax,size(T,1));
cx=repmat(xs,size(T,1),1);
cy=repmat(ys',1,size(T,2));
maskch=P_masked(2:end,:);
% separate + & -
maskch_p=maskch & (T>0);
maskch_n=maskch & (T<0);
switch cfg.style
case 1
if ~ op
contour(cx,cy,maskch_p,1,'w','LineWidth',3);
contour(cx,cy,maskch_n,1,'w','LineWidth',3);
else
if (sigbool(4)==1 || sigbool(5)==1) || nonparam
maskch=maskch+0;
maskch(maskch==0)=0.3;
set(ham,'alphadata',maskch);
else
maskch=maskch+0;
maskch(:)=0.3;
set(ham,'alphadata',maskch);
contour(cx,cy,maskch_p,1,'r:','LineWidth',3);
contour(cx,cy,maskch_n,1,'r:','LineWidth',3);
end
end
case 2
contour(cx,cy,maskch,1,'r','LineWidth',2);
end
end
%axis tight
T_dc=sptdata(1,:);
T_dc3=repmat(T_dc,3,1);
subplot(9,1,9);
switch cfg.style
case 1
hdc=imagesc([xmin, xmax],[-1, 1],T_dc3,clim);
case 2
xs=linspace(xmin,xmax,size(T_dc3,2));
ys=linspace(-1.5,1.5,size(T_dc3,1));
cx=repmat(xs,size(T_dc3,1),1);
cy=repmat(ys',1,size(T_dc3,2));
%contourf(cx,cy,T_dc3,clev);
hdc=contourfcmap(cx,cy,T_dc3,clev,myhot, ...
'lo', [.9 .9 .9], ...
'hi', [.25 .25 .25], ...
'cbarloc', 'eastoutside');
set(hdc.cb.p,'visible','off');
set(hdc.cb.ax,'visible','off');
ham_pos=get(ham.h.Parent,'position');
hdc_pos=get(hdc.h.Parent,'position');
hdc_pos(3)=ham_pos(3);
set(hdc.h.Parent,'position',hdc_pos);
end
set(gca,'YDir','normal','FontSize',20,'FontName','Arial');
set(gca,'box','on');
axis tight
%hb2=colorbar;
if fF
if dyadic
ytickmin=-1.5;
ytickmax=1.5;
ytick_value=0;
set(gca,'YTick',ytick_value);
set(gca,'YTickLabel','trend_A_M');
tickmin=ceil(xmin/1)*1;
tickmax=floor(xmax/1)*1;
if (xmax-tickmax)>0.1
halfxpix=0.5*(xmax-xmin)/(size(T_dc3,2)-1);
xmaxp=xmax+halfxpix;
xtick_value=[tickmin:1:tickmax xmaxp];
else
xtick_value=tickmin:1:tickmax;
end
set(gca,'XTick',xtick_value);
xlblval=2.^xtick_value;
%xlblval(end)=round(xlblval(end),1);
xlblval(end)=round(xlblval(end)); % reset it to previous line after drafting
set(gca,'XTickLabel',xlblval);
%set(gca,'xlim',[xmin xmax]);
else
ytickmin=-1.5;
ytickmax=1.5;
ytick_value=0;
set(gca,'YTick',ytick_value);
set(gca,'YTickLabel','trend_A_M');
tickmin=ceil(xmin/10)*10;
tickmax=floor(xmax/10)*10;
set(gca,'XTick',tickmin:10:tickmax);
set(gca,'XTickLabel',tickmin:10:tickmax);
%set(gca,'xlim',[xmin xmax]);
end
set(get(gca, 'XLabel'),'String','carrier frequency (Hz)','FontSize',20);
% set(get(gca, 'YLabel'),'String','AM (Hz)','FontSize',14);
% hold on
% ssy=linspace(xmin,ymax);
% %ssx=zeros(size(ssy));
% ssx=ssy;
% plot(ssx,ssy,'k:','LineWidth',2);
else
if dyadic
ytickmin=-1.5;
ytickmax=1.5;
ytick_value=0;
set(gca,'YTick',ytick_value);
set(gca,'YTickLabel','trend_A_M');
end
tickmin=ceil(xmin/500)*500;
tickmax=floor(xmax/500)*500;
set(gca,'XTick',tickmin:500:tickmax);
set(gca,'XTickLabel',tickmin:500:tickmax);
set(get(gca, 'XLabel'),'String','time (ms)','FontSize',20);
%set(gca,'xlim',[xmin xmax]);
% set(get(gca, 'YLabel'),'String','Frequency (Hz)','FontSize',14);
% hold on
% ssy=linspace(ymin,ymax);
% ssx=zeros(size(ssy));
% %ssx=ssy;
% plot(ssx,ssy,'k:','LineWidth',2.5);
end
hold on
if length(varargin)>1
xs=linspace(xmin,xmax,size(T_dc3,2));
ys=linspace(-1.5,1.5,size(T_dc3,1));
%ys=0;
cx=repmat(xs,size(T_dc3,1),1);
cy=repmat(ys',1,size(T_dc3,2));
maskch=P_masked(1,:);
% separate + & -
maskch_p=maskch & (T_dc>0);
maskch_n=maskch & (T_dc<0);
maskch_ex=zeros(3,length(maskch));
maskch_ex(2,:)=maskch;
maskch_pex=zeros(3,length(maskch_p));
maskch_pex(2,:)=maskch_p;
maskch_nex=zeros(3,length(maskch_n));
maskch_nex(2,:)=maskch_n;
switch cfg.style
case 1
if ~op
contour(cx,cy,maskch_pex,1,'w','LineWidth',3);
contour(cx,cy,maskch_nex,1,'w','LineWidth',3);
else
if (sigbool(4)==1 || sigbool(5)==1) || nonparam
maskch_ex=maskch_ex+0;
maskch_ex(maskch_ex==0)=0.3;
set(hdc,'alphadata',maskch_ex);
else
maskch_ex=maskch_ex+0;
maskch_ex(:)=0.3;
set(hdc,'alphadata',maskch_ex);
contour(cx,cy,maskch_pex,1,'r:','LineWidth',3);
contour(cx,cy,maskch_nex,1,'r:','LineWidth',3);
end
% maskch_ex=maskch_ex+0;
% maskch_ex(maskch_ex==0)=0.3;
% set(hdc,'alphadata',maskch_ex);
end
case 2
contour(cx,cy,maskch_ex,1,'r','LineWidth',2);
end
end
set(gca,'ylim',[-0.9 0.9]);
old_pos=get(gcf,'position');
new_pos=old_pos;
new_pos(4)= old_pos(4)*1.1;
new_pos(2)= old_pos(2)*0.8;
set(gcf,'position',new_pos);
set(gcf,'position',[1,1,1.4,1.15].*get(gcf,'position'));
cax_pos=get(gca,'position');
amax_opos=get(ham.Parent,'position');
amax_npos=amax_opos;
amax_npos(3)=cax_pos(3);
amax_npos(1)=cax_pos(1);
set(ham.Parent,'position',amax_npos);
end