DESCRIPTION

Package: FELLA
Type: Package
Title: Interpretation and enrichment for metabolomics data
Version: 1.11.0
Date: 2019-10-19
Authors@R: c(
    person(
        "Sergio", "Picart-Armada", role = c("aut", "cre"),
        email = "sergi.picart@upc.edu"), 
    person(
        "Francesc", "Fernandez-Albert", role = c("aut"),
        email = "francesc.fernandez.albert@upc.edu"),
    person(
        "Alexandre", "Perera-Lluna", role = c("aut"),
        email = "alexandre.perera@upc.edu"))
Maintainer: Sergio Picart-Armada <sergi.picart@upc.edu>
Description: Enrichment of metabolomics data using KEGG entries. 
    Given a set of affected compounds, FELLA suggests affected
    reactions, enzymes, modules and pathways using label propagation 
    in a knowledge model network. The resulting subnetwork 
    can be visualised and exported. 
License: GPL-3
LazyLoad: yes
Imports:
    methods,
    igraph,
    Matrix,
    KEGGREST,
    plyr, 
    stats, 
    graphics, 
    utils
Enhances: 
Depends:
    R (>= 3.5.0)
Suggests:
    shiny, 
    DT,
    magrittr,
    visNetwork, 
    knitr,
    BiocStyle,
    rmarkdown,
    testthat, 
    biomaRt,
    org.Hs.eg.db,
    org.Mm.eg.db,
    AnnotationDbi,
    GOSemSim
VignetteBuilder: knitr
RoxygenNote: 6.1.1
Encoding: UTF-8
biocViews: 
    Software, 
    Metabolomics, 
    GraphAndNetwork, 
    KEGG, 
    GO,
    Pathways, 
    Network, 
    NetworkEnrichment
Collate: 
    'AllArguments.R'
    'AllClasses.R'
    'AllMethods.R'
    'generateResultsTable.R'
    'generateEnzymesTable.R'
    'generateResultsGraph.R'
    'exportResults.R'
    'addGOToGraph.R'
    'buildGraphFromKEGGREST.R'
    'buildDataFromGraph.R'
    'defineCompounds.R'
    'doc-data.R'
    'doc-package.R'
    'runHypergeom.R'
    'runDiffusion.R'
    'runPagerank.R'
    'enrich.R'
    'get-.R'
    'is-.R'
    'launchApp.R'
    'list-.R'
    'loadKEGGdata.R'
    'plotBipartite.R'
    'plotGraph.R'
    'plotLegend.R'