No such file: sa_crop.nii.gz、 seg_sa_crop.nii.gz

[Tiantian089]

Hi,
I ran into some problems when running eval_strain_sax.py.
It shows that FileNotFoundError: No such file or no access: '/cine_motion/sa_crop.nii.gz'

I think maybe the following statement did not execute successfully:
os.system('mirtk transform-image {0}/sa.nii.gz {1}/sa_crop.nii.gz '
'-target {1}/seg_sa_lv_crop_ED.nii.gz'.format(data_dir, output_dir))
os.system('mirtk transform-image {0}/seg_sa.nii.gz {1}/seg_sa_crop.nii.gz '
'-target {1}/seg_sa_lv_crop_ED.nii.gz'.format(data_dir, output_dir))

But I've downloaded the MIRTK successful.... Could you give me some guidances?

[tramanhphambme]

Hello,
I recently downloaded and tried to run the code. I also download the MIRTK program completely. But I couldn't run that statement as well. If you firgure it out, could you please share with me? Thanks

[iimog]

Can you verify, that mirtk is not only downloaded but in a location where it can be found by your shell. You can check with which mirtk. If the output is empty you need to add the folder containing mirtk to your PATH. For me this command works.

[Taylent]

I would like to ask what features should I select when compiling MIRTK with CMAKE?