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CHANGELOG.rst

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Changes

Version 1.2.15, 2024/02/21

  • Support for parallel run of MEME

Version 1.2.12, 2021/05/20

  • support for MEME up to 5.3.3

Version 1.2.11, 2018/08/24

  • bug fix: resume feature

Version 1.2.10, 2018/07/16

  • bug fix: BSCM switch ratios reference

Version 1.2.9, 2018/06/20

  • bug fix: set enrichment some parameters not referenced correctly

Version 1.2.8, 2018/06/20

  • removed memory profiling debug (can cause problems)
  • more tolerant debug score writing

Version 1.2.7, 2018/06/19

  • support for MEME versions 4.11.4 and 4.12.0
  • run log data now stored in database for consistency

Version 1.2.6, 2017/02/03

  • database aspects now handled with sqlalchemy
  • support for MEME 4.11.x added

Version 1.2.5, 2017/02/03

  • cm2view integrates the updated sequence logo viewer

Version 1.2.4, 2017/01/17

  • dependency update, missing packages included

Version 1.2.3, 2016/11/17

  • tweaks to export and plotting
  • fix for clusters_per_row option

Version 1.2.2, 2016/09/06

  • added the cm2plot tool

Version 1.2.1, 2016/08/25

  • fix: numeric row names are converted to string
  • fix: DataMatrix.subtract_with_quantile() did not have any effect
  • fix: set enrichment, bonferroni cutoff denominator-numerator were in wrong positions, value of the minium reference matrix value

Version 1.2.0, 2016/08/08

Initial PyPI version