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Updated Walkthrough of a Complete cMonkey Run (markdown)
Updated Quickstart (markdown)
Updated cm2view (markdown)
Updated More tips (markdown)
Updated Home (markdown)
Destroyed EC2 Setup (markdown)
Updated Installation (markdown)
Updated Configuration and run options (markdown)
Updated cmviewer (markdown)
Updated Input file formats (markdown)
updated deb file installation instructions
fixes
added ipython docs