From 08fdf3b06900ea0201217bfec8202b6ba5a87384 Mon Sep 17 00:00:00 2001 From: chapmanb Date: Wed, 3 Apr 2019 05:32:17 -0400 Subject: [PATCH] v1.1.4 release --- HISTORY.md | 5 ++++- docs/conf.py | 4 ++-- requirements-conda.txt | 2 +- requirements.txt | 2 +- setup.py | 2 +- 5 files changed, 9 insertions(+), 6 deletions(-) diff --git a/HISTORY.md b/HISTORY.md index e3ed04b9e..32cbcbae9 100644 --- a/HISTORY.md +++ b/HISTORY.md @@ -1,5 +1,8 @@ -## 1.1.4 (in progress) +## 1.1.4 (3 April 2019) +- Move to Python 3.6. A python2 environment in the install runs non python3 + compatible programs. The codebase is still compatible with python 2.7 but + will only get run and tested on python 3 for future releases. - RNA-seq: fix for race condition when creating the pizzly cache - RNA-seq: Add Salmon to multiqc report. - RNA-seq single-cell/DGE: Properly strip transcript versions from GENCODE GTFs. diff --git a/docs/conf.py b/docs/conf.py index 6e78f9433..6583ae59e 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -48,9 +48,9 @@ # built documents. # # The short X.Y version. -version = '1.1.3' +version = '1.1.4' # The full version, including alpha/beta/rc tags. -release = '1.1.3' +release = '1.1.4' # The language for content autogenerated by Sphinx. Refer to documentation # for a list of supported languages. diff --git a/requirements-conda.txt b/requirements-conda.txt index abcfec8bd..990197b56 100644 --- a/requirements-conda.txt +++ b/requirements-conda.txt @@ -1 +1 @@ -bcbio-nextgen=1.1.3 +bcbio-nextgen=1.1.4 diff --git a/requirements.txt b/requirements.txt index dafa590a8..f9581af89 100644 --- a/requirements.txt +++ b/requirements.txt @@ -1 +1 @@ -bcbio-nextgen==1.1.2 +bcbio-nextgen==1.1.4 diff --git a/setup.py b/setup.py index 25b48c4eb..fe931ef63 100755 --- a/setup.py +++ b/setup.py @@ -4,7 +4,7 @@ import os from setuptools import setup, find_packages -version = "1.1.4a" +version = "1.1.4" def write_version_py(): version_py = os.path.join(os.path.dirname(__file__), 'bcbio', 'pipeline',