Biocontainer dependency issue

[tzvi909]

quay.io biocontainer: quay.io/biocontainers/bcbio-variation-recall:0.2.6--hdfd78af_1 doesn't contain bcftools.

error: java.lang.Exception: Shell command failed: bcftools isec -n '+1' -o /mnt/sample_ref.merged-work/txtmp3861171492212019963/sample_ref.merged-intersect.txt ./sample.1.vcf.gz ./sample.2.vcf.gz ./sample.3.vcf.gz /mnt/sample_ref.merged-work/txtmp3861171492212019963/run.sh: line 2: bcftools: command not found bash: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)

[tzvi909]

or when trying to run on docker getting the following error:

` bcbio.variation.recall.main.main
...
bcbio.variation.recall.main/-main main.clj: 30

              bcbio.variation.recall.main/-main            main.clj:  33

           bcbio.variation.recall.main/-main/fn            main.clj:  34

                             clojure.core/apply            core.clj: 665

                                            ...                         
       bcbio.variation.ensemble.intersect/-main       intersect.clj: 117

       bcbio.variation.ensemble.intersect/-main       intersect.clj: 141

bcbio.variation.ensemble.intersect/ensemble-vcfs intersect.clj: 87

bcbio.variation.ensemble.intersect/ensemble-vcfs/fn intersect.clj: 89

                                            ...                         

bcbio.variation.variantcontext/write-vcf-w-template variantcontext.clj: 165

bcbio.variation.variantcontext/write-vcf-w-template variantcontext.clj: 186

                                            ...                         

java.lang.IllegalArgumentException: No matching method writeHeader found taking 1 args for class htsjdk.variant.variantcontext.writer.VCFWriter`

This is all despite using the conda package in the conda docker