Nova New Files command causes CodeKit to process ignored files

[lolbat]

Quick, short summary:
When I create a new file using the New: File command from the Command Palette, CodeKit will process the file even though the directory is set to ignore files.

Expected results:
CodeKit would ignore it

Actual results:
CodeKit copies the file to the build directory

Exact steps to reproduce:
Create a directory and set its Output Options to 'Ignore'
Go into Nova
Create a new file using the New:File command from the Command Palette
Nova creates the file
CodeKit copies the file to the build directory