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Updated For People Looking to Run the Pipeline (markdown)
I only use the google docs general documentation, because it is much more helpful than the description here. I thought I might as well include the document in this body of text for others to see
Updated the for the current version of the pipeline and added a link to properly setting up minconda.
Added The 3rd link to the miniconda doc
Created Conda Manual For Mudd's Computing Environments (purves/knuth/hopper) (markdown)
Updated Defining your own ROIs (markdown)
Added in a sample call to the script which clarifies that Python 3.7 needs to be used.
Links to page explaining how to use roidetect.py
Explains how to use roidetect.py
Updated to reflect the creation of pipeline.py
Wrote an explanation of how to use the pipeline.
Added links
Created Tips for Editing the Pipeline (markdown)
Created For People Looking to Run the Pipeline (markdown)
Destroyed Protocol (markdown)
Destroyed Snakemake Pipeline (markdown)
Updated Protocol (markdown)
Destroyed antTracker.py (markdown)
Edited to indicate that the antTracker.py file is no longer preferred.
Created the start of a page detailing the pipeline.
Updated antTracker.py (markdown)