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Issue
The current implementation of snappy pull-processed-data takes only one file type as argument per execution (arg: --file-type). That is slightly inconvenient for when one wants to download several file types. For example, for CADS execution both VCFs and BAM are required, so the command is called twice:
Issue
The current implementation of
snappy pull-processed-data
takes only one file type as argument per execution (arg:--file-type
). That is slightly inconvenient for when one wants to download several file types. For example, for CADS execution both VCFs and BAM are required, so the command is called twice:Possible Solution
Change argument
--file-type
from string to list. Change the impacted methods accordingly.Alternatives
None.
Additional context
None.
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