diff --git a/README.md b/README.md index 9827ac2..2e5b743 100644 --- a/README.md +++ b/README.md @@ -268,27 +268,30 @@ reev-server-worker db to-bin \ To obtain ClinVar ```bash session -wget -O /tmp/annonars-clinvar-minimal-grch37-20230910+0.18.0.tar.gz \ - https://github.com/bihealth/annonars-data-clinvar/releases/download/clinvar-weekly-20230910/annonars-clinvar-minimal-grch37-20230910+0.18.0.tar.gz -wget -O /tmp/annonars-clinvar-minimal-grch38-20230910+0.18.0.tar.gz \ - https://github.com/bihealth/annonars-data-clinvar/releases/download/clinvar-weekly-20230910/annonars-clinvar-minimal-grch38-20230910+0.18.0.tar.gz - -tar --strip-components=2 -C .dev/volumes/reev-static/data/download/annonars/ \ - -xf /tmp/annonars-clinvar-minimal-grch37-20230910+0.18.0.tar.gz -tar --strip-components=2 -C .dev/volumes/reev-static/data/download/annonars \ - -xf /tmp/annonars-clinvar-minimal-grch38-20230910+0.18.0.tar.gz - -ln -sr .dev/volumes/reev-static/data/download/annonars/annonars-clinvar-minimal-grch37-20230910+0.18.0 \ - .dev/volumes/reev-static/data/annonars/grch37/clinvar -ln -sr .dev/volumes/reev-static/data/download/annonars/annonars-clinvar-minimal-grch38-20230910+0.18.0 \ - .dev/volumes/reev-static/data/annonars/grch38/clinvar - -wget -O /tmp/annonars-clinvar-genes-20230910+0.18.0.tar.gz \ - https://github.com/bihealth/annonars-data-clinvar/releases/download/clinvar-weekly-20230910/annonars-clinvar-genes-20230910+0.18.0.tar.gz -tar -C .dev/volumes/reev-static/data/download/annonars \ - -xf /tmp/annonars-clinvar-genes-20230910+0.18.0.tar.gz - -ln -sr .dev/volumes/reev-static/data/download/annonars/annonars-clinvar-genes-20230910+0.18.0 \ +wget -O /tmp/annonars-clinvar-minimal-grch37-20231015+0.24.1.tar.gz \ + https://github.com/bihealth/annonars-data-clinvar/releases/download/annonars-data-clinvar-20231015/annonars-clinvar-minimal-grch37-20231015+0.24.1.tar.gz +wget -O /tmp/annonars-clinvar-minimal-grch38-20231015+0.24.1.tar.gz \ + https://github.com/bihealth/annonars-data-clinvar/releases/download/annonars-data-clinvar-20231015/annonars-clinvar-minimal-grch38-20231015+0.24.1.tar.gz + +tar -C .full/volumes/reev-static/data/download/annonars/ \ + -tf /tmp/annonars-clinvar-minimal-grch37-20231015+0.24.1.tar.gz +tar -C .full/volumes/reev-static/data/download/annonars \ + -xf /tmp/annonars-clinvar-minimal-grch38-20231015+0.24.1.tar.gz + +rm -f .full/volumes/reev-static/data/annonars/grch37/clinvar +ln -sr .full/volumes/reev-static/data/download/annonars/annonars-clinvar-minimal-grch37-20231015+0.24.1 \ + .full/volumes/reev-static/data/annonars/grch37/clinvar +rm -f .full/volumes/reev-static/data/annonars/grch38/clinvar +ln -sr .full/volumes/reev-static/data/download/annonars/annonars-clinvar-minimal-grch38-20231015+0.24.1 \ + .full/volumes/reev-static/data/annonars/grch38/clinvar + +wget -O /tmp/annonars-clinvar-genes-20231015+0.24.1.tar.gz \ + https://github.com/bihealth/annonars-data-clinvar/releases/download/annonars-data-clinvar-20231015/annonars-clinvar-genes-20231015+0.24.1.tar.gz +tar -C .full/volumes/reev-static/data/download/annonars \ + -xf /tmp/annonars-clinvar-genes-20231015+0.24.1.tar.gz + +rm -f .dev/volumes/reev-static/data/annonars/clinvar-genes +ln -sr .dev/volumes/reev-static/data/download/annonars/annonars-clinvar-genes-20231015+0.24.1 \ .dev/volumes/reev-static/data/annonars/clinvar-genes ```