diff --git a/backend/alembic/versions/27c3977494f7_init_bookmarks.py b/backend/alembic/versions/27c3977494f7_init_bookmarks.py index ba5e9827..c83a09ee 100644 --- a/backend/alembic/versions/27c3977494f7_init_bookmarks.py +++ b/backend/alembic/versions/27c3977494f7_init_bookmarks.py @@ -5,6 +5,7 @@ Create Date: 2023-10-27 09:40:49.740067+02:00 """ + import fastapi_users_db_sqlalchemy.generics # noqa import sqlalchemy as sa diff --git a/backend/alembic/versions/397feb4e1315_update_json_keys_caseinfo.py b/backend/alembic/versions/397feb4e1315_update_json_keys_caseinfo.py index c088892d..7201fb4d 100644 --- a/backend/alembic/versions/397feb4e1315_update_json_keys_caseinfo.py +++ b/backend/alembic/versions/397feb4e1315_update_json_keys_caseinfo.py @@ -5,6 +5,7 @@ Create Date: 2024-02-14 12:42:36.371531+01:00 """ + import sqlalchemy as sa from alembic import op diff --git a/backend/alembic/versions/4f3b20f156c1_init_caseinfo.py b/backend/alembic/versions/4f3b20f156c1_init_caseinfo.py index ae048b17..16e57fa7 100644 --- a/backend/alembic/versions/4f3b20f156c1_init_caseinfo.py +++ b/backend/alembic/versions/4f3b20f156c1_init_caseinfo.py @@ -5,6 +5,7 @@ Create Date: 2023-11-03 17:43:45.776515+01:00 """ + import fastapi_users_db_sqlalchemy.generics # noqa import sqlalchemy as sa diff --git a/backend/alembic/versions/6f14afa8ea47_update_auth_models.py b/backend/alembic/versions/6f14afa8ea47_update_auth_models.py index 4766cab7..94e61287 100644 --- a/backend/alembic/versions/6f14afa8ea47_update_auth_models.py +++ b/backend/alembic/versions/6f14afa8ea47_update_auth_models.py @@ -5,6 +5,7 @@ Create Date: 2024-02-19 17:43:45.473226+01:00 """ + import fastapi_users_db_sqlalchemy.generics # noqa import sqlalchemy as sa from sqlalchemy.dialects import postgresql diff --git a/backend/alembic/versions/850ccab0221d_init_clinvarsub.py b/backend/alembic/versions/850ccab0221d_init_clinvarsub.py index ba73cb92..42469f35 100644 --- a/backend/alembic/versions/850ccab0221d_init_clinvarsub.py +++ b/backend/alembic/versions/850ccab0221d_init_clinvarsub.py @@ -5,6 +5,7 @@ Create Date: 2023-12-15 12:32:49.537941+01:00 """ + import fastapi_users_db_sqlalchemy.generics # noqa import sqlalchemy as sa diff --git a/backend/alembic/versions/8ccd31a4f116_init_adminmsgs.py b/backend/alembic/versions/8ccd31a4f116_init_adminmsgs.py index 2430feb7..68c7052e 100644 --- a/backend/alembic/versions/8ccd31a4f116_init_adminmsgs.py +++ b/backend/alembic/versions/8ccd31a4f116_init_adminmsgs.py @@ -5,6 +5,7 @@ Create Date: 2023-09-28 10:41:57.671434+02:00 """ + import fastapi_users_db_sqlalchemy.generics # noqa import sqlalchemy as sa diff --git a/backend/alembic/versions/c8009ed33089_init_users.py b/backend/alembic/versions/c8009ed33089_init_users.py index 78d58896..368d40f7 100644 --- a/backend/alembic/versions/c8009ed33089_init_users.py +++ b/backend/alembic/versions/c8009ed33089_init_users.py @@ -5,6 +5,7 @@ Create Date: 2023-09-28 10:41:24.861855+02:00 """ + import fastapi_users_db_sqlalchemy.generics # noqa import sqlalchemy as sa diff --git a/backend/alembic/versions/d10fec1c88fc_init_acmgseqvar.py b/backend/alembic/versions/d10fec1c88fc_init_acmgseqvar.py index 085d6af8..3329150b 100644 --- a/backend/alembic/versions/d10fec1c88fc_init_acmgseqvar.py +++ b/backend/alembic/versions/d10fec1c88fc_init_acmgseqvar.py @@ -4,6 +4,7 @@ Create Date: 2023-11-29 11:16:25.636296+01:00 """ + import fastapi_users_db_sqlalchemy.generics # noqa import sqlalchemy as sa diff --git a/backend/app/api/internal/endpoints/remote.py b/backend/app/api/internal/endpoints/remote.py index 4793a4c0..2148e9fd 100644 --- a/backend/app/api/internal/endpoints/remote.py +++ b/backend/app/api/internal/endpoints/remote.py @@ -54,9 +54,13 @@ class HTTPXClientWrapper: async_client: httpx.AsyncClient | None = None def start(self): - self.transport = httpx.AsyncHTTPTransport(retries=1) + self.transport = httpx.AsyncHTTPTransport( + retries=1, verify=False + ) # Disabling cert verification for AutCNV self.transport._pool._ssl_context.options |= 0x4 # OP_LEGACY_SERVER_CONNECT - self.async_client = httpx.AsyncClient(timeout=httpx.Timeout(60.0), transport=self.transport) + self.async_client = httpx.AsyncClient( + timeout=httpx.Timeout(60.0), transport=self.transport, verify=False + ) # Disablinng cert verification for AutoCNV async def stop(self): await self.async_client.aclose() diff --git a/backend/tests/app/test_clinvarsub.py b/backend/tests/app/test_clinvarsub.py index fc54767c..dc3d1e7f 100644 --- a/backend/tests/app/test_clinvarsub.py +++ b/backend/tests/app/test_clinvarsub.py @@ -145,9 +145,11 @@ async def test_handler_with_session_update_status_in_progress_then_run( db_session, db_obj=submissionactivity, obj_in={ - "kind": SubmissionActivityKind.CREATE - if kind == "create" - else SubmissionActivityKind.RETRIEVE, + "kind": ( + SubmissionActivityKind.CREATE + if kind == "create" + else SubmissionActivityKind.RETRIEVE + ), "status": SubmissionActivityStatus.WAITING, }, )