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Allow commas in SV input #147

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holtgrewe opened this issue Oct 17, 2023 · 0 comments · Fixed by #157
Closed

Allow commas in SV input #147

holtgrewe opened this issue Oct 17, 2023 · 0 comments · Fixed by #157
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enhancement New feature or request
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@holtgrewe
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Is your feature request related to a problem? Please describe.
At the moment, integers have to be typed as is. This is complicated for long coordinates such as DEL:chr17:41176312:41277500 or chr17:41197708:T:G.

Describe the solution you'd like
For SPDI and SVs we should allow for commas in the coordinates. They should be ignored when parsing (replace(",", "")).

Describe alternatives you've considered
NA

Additional context

  • adjust regexes for matching appropriately
  • do not touch gene names
  • do not touch HGVS descriptions
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